mRNA_S-ischiensis_contig109.1931.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig109.1931.1 vs. uniprot
Match: A0A836CNT2_9STRA (Ferredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNT2_9STRA) HSP 1 Score: 157 bits (396), Expect = 3.190e-43 Identity = 82/145 (56.55%), Postives = 101/145 (69.66%), Query Frame = 3
Query: 51 ALACAVVAQGFLAPMRLPTAAPANVAGPRMFFGGGGGQKKSGKGIDITVKQKTGFKDTVISLDGPKNLRKALLDKKVDLYPLQGKIYNCGGGGSCGTCAVNIVAGAGNASPKGPAEKKLLAGKPDSYRLSCCTMAKGPMTVMVKP 485
AL+ + A+ FL L + PRM FG KS KGI++TV+QK FKDTV++++ P NLRKAL+ +++YPLQGKIYNCGGGGSCGTC VN+VAG N SPKGPAEKKLL KP++YRLSCCT G +TV KP
Sbjct: 13 ALSVMLAAEAFLVAPALQRPVQRDTLTPRMLFGKKAAPAKS-KGIEVTVQQKY-FKDTVVAMEQPGNLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGNKPETYRLSCCTKVNGNITVATKP 155
BLAST of mRNA_S-ischiensis_contig109.1931.1 vs. uniprot
Match: D8LBE9_ECTSI (Ferredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBE9_ECTSI) HSP 1 Score: 151 bits (381), Expect = 6.000e-41 Identity = 76/122 (62.30%), Postives = 89/122 (72.95%), Query Frame = 3
Query: 126 AGPRMFFGGGGGQKKSGKGIDITVKQKTGFKDTVISLDGPKNLRKALLDKKVDLYPLQGKIYNCGGGGSCGTCAVNIVAGAGNASPKGPAEKKLLAG--KPDSYRLSCCTMAKGPMTVMVKP 485
+G +M FG I + V+QKTGFK+T ++L G NLRKAL+D K+D+YPLQGKIYNCGGGGSCGTCAVN+ AGA N SPKGP EKKLL +P SYRLSCCTM GP+TV KP
Sbjct: 38 SGMQMLFGXXXXXXXXXXXIVVKVQQKTGFKETELTLAGKTNLRKALMDNKIDIYPLQGKIYNCGGGGSCGTCAVNVKAGAQNCSPKGPGEKKLLDKNKRPASYRLSCCTMVSGPVTVQTKP 159
BLAST of mRNA_S-ischiensis_contig109.1931.1 vs. uniprot
Match: A0A7S2UXM9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXM9_9STRA) HSP 1 Score: 123 bits (308), Expect = 2.630e-30 Identity = 59/99 (59.60%), Postives = 73/99 (73.74%), Query Frame = 3
Query: 189 ITVKQKTGFKDTVISLDGPKNLRKALLDKKVDLYPLQGKIYNCGGGGSCGTCAVNIVAGAGNASPKGPAEKKLLAGKPDSYRLSCCTMAKGPMTVMVKP 485
ITVKQ+ GF D + +G NLRK L+ +K+D+YPLQGK+ NCGGGG CGTCAV ++ GA N SPK P EKK+L+ KP++YRLSCCT G TV KP
Sbjct: 56 ITVKQR-GFTDFDLETEGTANLRKTLMAQKIDIYPLQGKLTNCGGGGVCGTCAVEVMDGANNLSPKAPNEKKVLSKKPENYRLSCCTRVSGACTVRTKP 153
BLAST of mRNA_S-ischiensis_contig109.1931.1 vs. uniprot
Match: W7TM71_9STRA (Ferredoxin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TM71_9STRA) HSP 1 Score: 114 bits (285), Expect = 6.570e-27 Identity = 60/113 (53.10%), Postives = 76/113 (67.26%), Query Frame = 3
Query: 156 GGQKKSGKGIDITVKQKTGFKDTVISLDG--PKNLRKALLDKKVDLYPLQGKIYNCGGGGSCGTCAVNIVAGAGNASPKGPAEKKLLAGKP-DSYRLSCCTMAKGPMTVMVKP 485
GG KK+ +TV+QK +K+ + ++ P NLRK L+ K+D+YPLQGKIYNCGGGG CGTCA+ I+ GA N +PK P E K L GK D RL+CCT A G +TV KP
Sbjct: 50 GGNKKT---FTVTVQQKF-YKNAELEVEAGAPVNLRKELMKNKIDIYPLQGKIYNCGGGGQCGTCAIQIIKGAKNLNPKSPVEVKALGGKKGDDIRLACCTRASGDVTVKTKP 158
BLAST of mRNA_S-ischiensis_contig109.1931.1 vs. uniprot
Match: M1VFK1_CYAM1 (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VFK1_CYAM1) HSP 1 Score: 100 bits (250), Expect = 1.610e-21 Identity = 49/103 (47.57%), Postives = 67/103 (65.05%), Query Frame = 3
Query: 183 IDITVKQKTGFKDTVISLDGPKNLRKALLDKKVDLYPLQGKIYNCGGGGSCGTCAVNIVAGAGNASPKGPAEKKLLAGK--PDSYRLSCCTMAKGPMTVMVKP 485
+ +TV +K + V+ NLRK LL+ K+D+Y L+GK+ NCGGGG CGTC V+I G N +P+G E ++ K PDS+RLSCCT +GP+TV KP
Sbjct: 88 VQVTVYEKGKSEPRVLEAPVGSNLRKVLLENKIDVYTLRGKLTNCGGGGQCGTCIVDITEGQYNTNPRGWREARIFENKQAPDSWRLSCCTKIEGPITVRTKP 190
BLAST of mRNA_S-ischiensis_contig109.1931.1 vs. uniprot
Match: A0A835YVE2_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVE2_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 1.170e-20 Identity = 52/115 (45.22%), Postives = 66/115 (57.39%), Query Frame = 3
Query: 141 FFGGGGGQKKSGKGIDITVKQKTGFKDTVISLDGPKNLRKALLDKKVDLYPLQGKIYNCGGGGSCGTCAVNIVAGAGNASPKGPAEKKLLAGKPDSYRLSCCTMAKGPMTVMVKP 485
FF + + KG+ +TV Q + + S D P NLRK LLD KVDLY K+ CGGGG+CGTC V + G N S KG E+K+L RL+CCT GP++V VKP
Sbjct: 5 FFNKSPSKAAASKGVSVTVSQGSKVLKQIDS-DAPVNLRKLLLDNKVDLYKPLDKLKQCGGGGTCGTCRVRVTEGMENCSKKGLGEEKMLKAVGADIRLACCTRVTGPVSVTVKP 118
BLAST of mRNA_S-ischiensis_contig109.1931.1 vs. uniprot
Match: UPI00055BF685 ((2Fe-2S)-binding protein n=1 Tax=Myxosarcina sp. GI1 TaxID=1541065 RepID=UPI00055BF685) HSP 1 Score: 92.8 bits (229), Expect = 1.490e-19 Identity = 51/99 (51.52%), Postives = 64/99 (64.65%), Query Frame = 3
Query: 195 VKQKTGFK--DTVISLDGPKNLRKALLDKKVDLYPLQGKIYNCGGGGSCGTCAVNIVAGAGNASPKGPAEKKLLAGKPDSYRLSCCTMAKGPMTVMVKP 485
VK K G + V++ +G NLR+ L VD+Y L+GK+ NCGG G C TC V+IV G N SP+ E+K L KPDSYRLSC T+ KGP+TV KP
Sbjct: 7 VKDKNGKEVITEVVAANGS-NLREKALQNNVDIYKLKGKLTNCGGVGQCSTCIVDIVEGMENLSPRTDFEQKRLGKKPDSYRLSCQTVVKGPITVRTKP 104
BLAST of mRNA_S-ischiensis_contig109.1931.1 vs. uniprot
Match: A0A0V7ZXI1_9CYAN (Iron ABC transporter substrate-binding protein n=1 Tax=Mastigocoleus testarum BC008 TaxID=371196 RepID=A0A0V7ZXI1_9CYAN) HSP 1 Score: 91.7 bits (226), Expect = 3.360e-19 Identity = 43/79 (54.43%), Postives = 55/79 (69.62%), Query Frame = 3
Query: 249 NLRKALLDKKVDLYPLQGKIYNCGGGGSCGTCAVNIVAGAGNASPKGPAEKKLLAGKPDSYRLSCCTMAKGPMTVMVKP 485
NLR ++ VD+Y + GK+ NCGG G CGTCAV IV+G N SP+ AE KLL KPD+YRL+C T+ GP+ V+ KP
Sbjct: 20 NLRLKAMENSVDIYKMWGKMMNCGGYGQCGTCAVEIVSGMENLSPRTDAENKLLKKKPDNYRLACQTLVNGPVEVITKP 98
BLAST of mRNA_S-ischiensis_contig109.1931.1 vs. uniprot
Match: A0A0T7BLW8_9CYAN (Iron ABC transporter substrate-binding protein n=1 Tax=Calothrix sp. 336/3 TaxID=1337936 RepID=A0A0T7BLW8_9CYAN) HSP 1 Score: 85.1 bits (209), Expect = 8.330e-17 Identity = 43/87 (49.43%), Postives = 57/87 (65.52%), Query Frame = 3
Query: 225 VISLDGPKNLRKALLDKKVDLYPLQGKIYNCGGGGSCGTCAVNIVAGAGNASPKGPAEKKLLAGKPDSYRLSCCTMAKGPMTVMVKP 485
VI+ +G NLR ++ VD+Y GK+ NCGGGG CG CA+ IV G N SP+ AE +LL KP++YRL+C T+ G +TV KP
Sbjct: 13 VIAANGA-NLRLKAMENGVDIYKTWGKMMNCGGGGQCGCCAIAIVEGMENLSPRTDAENRLLKKKPENYRLACQTIVNGAVTVTTKP 98
BLAST of mRNA_S-ischiensis_contig109.1931.1 vs. uniprot
Match: A0A218QTJ0_9CYAN (Ferredoxin n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A218QTJ0_9CYAN) HSP 1 Score: 84.7 bits (208), Expect = 1.150e-16 Identity = 41/87 (47.13%), Postives = 58/87 (66.67%), Query Frame = 3
Query: 225 VISLDGPKNLRKALLDKKVDLYPLQGKIYNCGGGGSCGTCAVNIVAGAGNASPKGPAEKKLLAGKPDSYRLSCCTMAKGPMTVMVKP 485
VI+ +G NLR + +D+Y GK+ NCGGGG+CGTC V IV G N SP+ AE ++L KP++YRL+C T+ G ++V+ KP
Sbjct: 13 VIAANGA-NLRLKAMQNNIDIYKFIGKMTNCGGGGNCGTCIVEIVEGIENLSPRTDAENRILKKKPENYRLACQTVVNGAVSVVTKP 98 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig109.1931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig109.1931.1 >prot_S-ischiensis_contig109.1931.1 ID=prot_S-ischiensis_contig109.1931.1|Name=mRNA_S-ischiensis_contig109.1931.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=154bp MRVLSVLVALACAVVAQGFLAPMRLPTAAPANVAGPRMFFGGGGGQKKSGback to top mRNA from alignment at S-ischiensis_contig109:46192..48274- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig109.1931.1 ID=mRNA_S-ischiensis_contig109.1931.1|Name=mRNA_S-ischiensis_contig109.1931.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2083bp|location=Sequence derived from alignment at S-ischiensis_contig109:46192..48274- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig109:46192..48274- >mRNA_S-ischiensis_contig109.1931.1 ID=mRNA_S-ischiensis_contig109.1931.1|Name=mRNA_S-ischiensis_contig109.1931.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=924bp|location=Sequence derived from alignment at S-ischiensis_contig109:46192..48274- (Schizocladia ischiensis KU_0333)back to top |