mRNA_S-ischiensis_contig108.1929.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig108.1929.1
Unique NamemRNA_S-ischiensis_contig108.1929.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig108.1929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig108contigS-ischiensis_contig108:187531..188078 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size548
Cds size546
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815572.3583245-CDS-S-ischiensis_contig108:187530..1880761622815572.3583245-CDS-S-ischiensis_contig108:187530..188076Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 187531..188076 +
1695739777.9694893-CDS-S-ischiensis_contig108:187530..1880761695739777.9694893-CDS-S-ischiensis_contig108:187530..188076Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 187531..188076 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig108.1929.1prot_S-ischiensis_contig108.1929.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig108 187531..188076 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig108.1929.1

>prot_S-ischiensis_contig108.1929.1 ID=prot_S-ischiensis_contig108.1929.1|Name=mRNA_S-ischiensis_contig108.1929.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=182bp
GRKLKAAAAAVRAEMLTQATGKRAREQESRASLPLEELPPAQGCESSEGI
RARAPSGGGGSRLPGPLLSSVVEPPPQLLPAPGGPSHPPKTAGRQCPSGG
VVWQQAQSLAAKKKKVKATSPRAAGAPAAAAAVAAAAACSTLGKARRAAA
GATAAAVMPGKKTGSSGGLRAQAGERKAGTAA
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mRNA from alignment at S-ischiensis_contig108:187531..188078+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig108.1929.1 ID=mRNA_S-ischiensis_contig108.1929.1|Name=mRNA_S-ischiensis_contig108.1929.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=548bp|location=Sequence derived from alignment at S-ischiensis_contig108:187531..188078+ (Schizocladia ischiensis KU_0333)
GGCAGGAAGCTCAAGGCAGCGGCGGCCGCGGTGAGGGCAGAGATGCTAAC
TCAGGCCACTGGCAAGCGTGCGCGGGAGCAGGAGTCCCGTGCTTCACTGC
CTCTCGAGGAGTTGCCGCCGGCCCAGGGCTGTGAGTCATCGGAGGGGATC
CGTGCCCGGGCCCCGTCGGGGGGGGGAGGGTCACGGTTGCCCGGGCCGCT
ACTCTCGTCGGTGGTGGAACCGCCACCGCAGCTGCTCCCGGCCCCCGGGG
GGCCCTCCCACCCGCCAAAGACCGCCGGGAGGCAGTGCCCGTCAGGGGGA
GTGGTGTGGCAGCAAGCGCAGTCGCTGGCGGCGAAAAAGAAGAAGGTCAA
GGCTACGTCACCCCGTGCGGCAGGTGCACCTGCGGCTGCTGCTGCTGTTG
CTGCTGCTGCCGCCTGCTCCACCCTGGGAAAGGCCCGTCGGGCGGCGGCG
GGGGCGACGGCGGCGGCAGTGATGCCTGGCAAGAAGACCGGCTCCTCGGG
GGGGCTGAGGGCCCAGGCGGGCGAGAGGAAGGCTGGCACTGCTGCTTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig108:187531..188078+

>mRNA_S-ischiensis_contig108.1929.1 ID=mRNA_S-ischiensis_contig108.1929.1|Name=mRNA_S-ischiensis_contig108.1929.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1092bp|location=Sequence derived from alignment at S-ischiensis_contig108:187531..188078+ (Schizocladia ischiensis KU_0333)
GGCAGGAAGCTCAAGGCAGCGGCGGCCGCGGTGAGGGCAGAGATGCTAAC
TCAGGCCACTGGCAAGCGTGCGCGGGAGCAGGAGTCCCGTGCTTCACTGC
CTCTCGAGGAGTTGCCGCCGGCCCAGGGCTGTGAGTCATCGGAGGGGATC
CGTGCCCGGGCCCCGTCGGGGGGGGGAGGGTCACGGTTGCCCGGGCCGCT
ACTCTCGTCGGTGGTGGAACCGCCACCGCAGCTGCTCCCGGCCCCCGGGG
GGCCCTCCCACCCGCCAAAGACCGCCGGGAGGCAGTGCCCGTCAGGGGGA
GTGGTGTGGCAGCAAGCGCAGTCGCTGGCGGCGAAAAAGAAGAAGGTCAA
GGCTACGTCACCCCGTGCGGCAGGTGCACCTGCGGCTGCTGCTGCTGTTG
CTGCTGCTGCCGCCTGCTCCACCCTGGGAAAGGCCCGTCGGGCGGCGGCG
GGGGCGACGGCGGCGGCAGTGATGCCTGGCAAGAAGACCGGCTCCTCGGG
GGGGCTGAGGGCCCAGGCGGGCGAGAGGAAGGCTGGCACTGCTGCTGGCA
GGAAGCTCAAGGCAGCGGCGGCCGCGGTGAGGGCAGAGATGCTAACTCAG
GCCACTGGCAAGCGTGCGCGGGAGCAGGAGTCCCGTGCTTCACTGCCTCT
CGAGGAGTTGCCGCCGGCCCAGGGCTGTGAGTCATCGGAGGGGATCCGTG
CCCGGGCCCCGTCGGGGGGGGGAGGGTCACGGTTGCCCGGGCCGCTACTC
TCGTCGGTGGTGGAACCGCCACCGCAGCTGCTCCCGGCCCCCGGGGGGCC
CTCCCACCCGCCAAAGACCGCCGGGAGGCAGTGCCCGTCAGGGGGAGTGG
TGTGGCAGCAAGCGCAGTCGCTGGCGGCGAAAAAGAAGAAGGTCAAGGCT
ACGTCACCCCGTGCGGCAGGTGCACCTGCGGCTGCTGCTGCTGTTGCTGC
TGCTGCCGCCTGCTCCACCCTGGGAAAGGCCCGTCGGGCGGCGGCGGGGG
CGACGGCGGCGGCAGTGATGCCTGGCAAGAAGACCGGCTCCTCGGGGGGG
CTGAGGGCCCAGGCGGGCGAGAGGAAGGCTGGCACTGCTGCT
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