mRNA_S-ischiensis_contig108.1928.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig108.1928.1
Unique NamemRNA_S-ischiensis_contig108.1928.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig108.1928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig108contigS-ischiensis_contig108:177282..177723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size442
Cds size441
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815572.3270984-CDS-S-ischiensis_contig108:177281..1777221622815572.3270984-CDS-S-ischiensis_contig108:177281..177722Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 177282..177722 +
1695739777.9572186-CDS-S-ischiensis_contig108:177281..1777221695739777.9572186-CDS-S-ischiensis_contig108:177281..177722Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 177282..177722 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig108.1928.1prot_S-ischiensis_contig108.1928.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig108 177282..177722 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig108.1928.1

>prot_S-ischiensis_contig108.1928.1 ID=prot_S-ischiensis_contig108.1928.1|Name=mRNA_S-ischiensis_contig108.1928.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=147bp
TATPAAPTASRGQVPLPLGPVPAPTGPVRGGVCDDGSAAPGAIGNNGQGH
MVRARAWGGDGGALEANGGIDCGRGCGDERAVGNGQGHARALQANGGIDR
GLVGCGDKDNEFRPRWCGDAPVPAGGAGGSPPAPLPHPPPAGGGNNG
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mRNA from alignment at S-ischiensis_contig108:177282..177723+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig108.1928.1 ID=mRNA_S-ischiensis_contig108.1928.1|Name=mRNA_S-ischiensis_contig108.1928.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=442bp|location=Sequence derived from alignment at S-ischiensis_contig108:177282..177723+ (Schizocladia ischiensis KU_0333)
ACGGCAACCCCGGCAGCCCCAACCGCTTCCCGAGGGCAGGTGCCGCTGCC
GCTGGGGCCGGTGCCGGCACCCACGGGTCCAGTTCGGGGGGGGGTGTGCG
ACGACGGGTCCGCCGCACCCGGTGCCATAGGGAACAACGGCCAAGGCCAC
ATGGTCCGTGCCCGTGCGTGGGGGGGTGACGGTGGTGCCCTCGAAGCGAA
TGGCGGCATTGATTGTGGCCGCGGTTGCGGTGATGAACGTGCCGTGGGGA
ACGGCCAAGGCCACGCCCGTGCTCTGCAGGCGAACGGCGGCATTGATCGT
GGCCTCGTCGGTTGCGGCGACAAAGACAACGAGTTCCGTCCGCGGTGGTG
TGGGGACGCGCCTGTGCCTGCGGGCGGCGCCGGCGGCTCGCCCCCCGCAC
CCCTCCCGCACCCCCCCCCCGCCGGCGGCGGCAACAACGGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig108:177282..177723+

>mRNA_S-ischiensis_contig108.1928.1 ID=mRNA_S-ischiensis_contig108.1928.1|Name=mRNA_S-ischiensis_contig108.1928.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=882bp|location=Sequence derived from alignment at S-ischiensis_contig108:177282..177723+ (Schizocladia ischiensis KU_0333)
ACGGCAACCCCGGCAGCCCCAACCGCTTCCCGAGGGCAGGTGCCGCTGCC
GCTGGGGCCGGTGCCGGCACCCACGGGTCCAGTTCGGGGGGGGGTGTGCG
ACGACGGGTCCGCCGCACCCGGTGCCATAGGGAACAACGGCCAAGGCCAC
ATGGTCCGTGCCCGTGCGTGGGGGGGTGACGGTGGTGCCCTCGAAGCGAA
TGGCGGCATTGATTGTGGCCGCGGTTGCGGTGATGAACGTGCCGTGGGGA
ACGGCCAAGGCCACGCCCGTGCTCTGCAGGCGAACGGCGGCATTGATCGT
GGCCTCGTCGGTTGCGGCGACAAAGACAACGAGTTCCGTCCGCGGTGGTG
TGGGGACGCGCCTGTGCCTGCGGGCGGCGCCGGCGGCTCGCCCCCCGCAC
CCCTCCCGCACCCCCCCCCCGCCGGCGGCGGCAACAACGGGACGGCAACC
CCGGCAGCCCCAACCGCTTCCCGAGGGCAGGTGCCGCTGCCGCTGGGGCC
GGTGCCGGCACCCACGGGTCCAGTTCGGGGGGGGGTGTGCGACGACGGGT
CCGCCGCACCCGGTGCCATAGGGAACAACGGCCAAGGCCACATGGTCCGT
GCCCGTGCGTGGGGGGGTGACGGTGGTGCCCTCGAAGCGAATGGCGGCAT
TGATTGTGGCCGCGGTTGCGGTGATGAACGTGCCGTGGGGAACGGCCAAG
GCCACGCCCGTGCTCTGCAGGCGAACGGCGGCATTGATCGTGGCCTCGTC
GGTTGCGGCGACAAAGACAACGAGTTCCGTCCGCGGTGGTGTGGGGACGC
GCCTGTGCCTGCGGGCGGCGCCGGCGGCTCGCCCCCCGCACCCCTCCCGC
ACCCCCCCCCCGCCGGCGGCGGCAACAACGGG
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