mRNA_S-ischiensis_contig108.1927.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig108.1927.1 vs. uniprot
Match: D8LCL4_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL4_ECTSI) HSP 1 Score: 167 bits (423), Expect = 9.470e-46 Identity = 76/116 (65.52%), Postives = 88/116 (75.86%), Query Frame = 3
Query: 3 RDPLYEMPHGPGEKPLWPTEEQIESLRELNYAPSVFTLEPGEFVHINKGRLHCFRKEEPLPGEDPGAPCVSVAWDWVFRGATPAGLARELATALDSVDVNRRHGAESLAPVETCIL 350
RD L+ MPH G P WPT+E +E LRELN+ PSVFTLEPGEFVHINKGRLH FRKE+PLP EDPG+ CVSVAWDWV++G + G E+A AL NRR G SLAPVETC++
Sbjct: 424 RDSLFRMPHCDGATPPWPTDEAVERLRELNFCPSVFTLEPGEFVHINKGRLHAFRKEDPLPHEDPGSVCVSVAWDWVYKGVSQEGCRGEMACALRCASDNRRFGVVSLAPVETCLV 539
BLAST of mRNA_S-ischiensis_contig108.1927.1 vs. uniprot
Match: A0A7S2DKI0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DKI0_9STRA) HSP 1 Score: 148 bits (373), Expect = 1.080e-41 Identity = 68/115 (59.13%), Postives = 83/115 (72.17%), Query Frame = 3
Query: 6 DPLYEMPHGPGEKPLWPTEEQIESLRELNYAPSVFTLEPGEFVHINKGRLHCFRKEEPLPGEDPGAPCVSVAWDWVFRGATPAGLARELATALDSVDVNRRHGAESLAPVETCIL 350
D LY MPH G+KP WPT QIESLR+LNY PSVFTLEPGEFVHINKGRLH FRK+ P ++P CVSVAWDW+++G++P L E+ +L+ V +NR+ SL VE IL
Sbjct: 154 DALYGMPHNDGQKPSWPTPSQIESLRDLNYCPSVFTLEPGEFVHINKGRLHAFRKKIPASVQEPEQFCVSVAWDWIYQGSSPRALKEEMDQSLECVALNRKQRVASLGHVENSIL 268
BLAST of mRNA_S-ischiensis_contig108.1927.1 vs. uniprot
Match: A0A7S2SQY1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQY1_9STRA) HSP 1 Score: 132 bits (332), Expect = 1.730e-33 Identity = 63/116 (54.31%), Postives = 76/116 (65.52%), Query Frame = 3
Query: 6 DPLYEMPHGPGEKPLWPTEEQIESLRELNYAPSVFTLEPGEFVHINKGRLHCFRKEEPLPGE-DPGAPCVSVAWDWVFRGATPAGLARELATALDSVDVNRRHGAESLAPVETCIL 350
D LY PH GEKP WPTE QI+ LR Y PSVFTLEPG++VHINKGRLH FRK P PG +P CVSVAWDW+++G++ L E+A L + N + SLA ET +L
Sbjct: 743 DALYGKPHDAGEKPPWPTETQIDELRRRGYCPSVFTLEPGDYVHINKGRLHAFRKRSPPPGSNEPEQFCVSVAWDWLYQGSSAKALEDEVAEPLACAEYNHKKRVPSLAHTETALL 858
BLAST of mRNA_S-ischiensis_contig108.1927.1 vs. uniprot
Match: A0A7S3Q867_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q867_9STRA) HSP 1 Score: 122 bits (306), Expect = 5.600e-30 Identity = 59/133 (44.36%), Postives = 81/133 (60.90%), Query Frame = 3
Query: 6 DPLYEMPHGPGEKPLWPTEEQIESLRELNYAPSVFTLEPGEFVHINKGRLHCFRK--EEPLPGED----------------PGAPCVSVAWDWVFRGATPAGLARELATALDSVDVNRRHGAESLAPVETCIL 350
D LY +PH G+KPLWP E I++ ELNY P VF L+PG+F+HINKGRLH FRK P+ +D PG+ C S+AWDW++ G T G+ E++ AL + ++HG +SLA E+CI+
Sbjct: 613 DALYGLPHHDGKKPLWPDHEAIKNCDELNYYPCVFILKPGQFLHINKGRLHAFRKAGRNPVDPKDCHSDIREECMANGAIKPGSICKSIAWDWMYTGTTEKGIHEEVSYALSCARLAKKHGVQSLAIPESCII 745
BLAST of mRNA_S-ischiensis_contig108.1927.1 vs. uniprot
Match: A0A7S1ZIK7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZIK7_9STRA) HSP 1 Score: 120 bits (301), Expect = 2.670e-29 Identity = 65/136 (47.79%), Postives = 82/136 (60.29%), Query Frame = 3
Query: 6 DPLYEMPH--GPGEKPLWPTEEQIESLRELNYAPSVFTLEPGEFVHINKGRLHCFRKEEP--LPGEDPGAP-----------------CVSVAWDWVFRGATPAGLARELATALDSVDVNRRHGAESLAPVETCIL 350
D LY +PH G GE+P+WP E IE R++NY PSVF L+PG+ VHINKGRLH FRK P LP D A C+SVAWDW+F+G T G RE+A+ L+ +NR+H +SLA ET +L
Sbjct: 805 DALYGLPHEDGCGERPMWPDCESIERCRKMNYYPSVFILKPGQHVHINKGRLHAFRKLSPTSLPQTDCHAKLRKSIILDENLGFGEQLCMSVAWDWMFKGVTSEGTNREVASILECARLNRKHMKQSLAIPETSLL 940
BLAST of mRNA_S-ischiensis_contig108.1927.1 vs. uniprot
Match: A0A448ZRZ6_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZRZ6_9STRA) HSP 1 Score: 117 bits (294), Expect = 2.320e-28 Identity = 61/136 (44.85%), Postives = 79/136 (58.09%), Query Frame = 3
Query: 6 DPLYEMPHGPG--EKPLWPTEEQIESLRELNYAPSVFTLEPGEFVHINKGRLHCFRKEEP--LPGED-----------------PGAPCVSVAWDWVFRGATPAGLARELATALDSVDVNRRHGAESLAPVETCIL 350
D LY MPHG G +KP WPT++ +E R++ Y PSV LEPG+ VHINKGRLH FRK LP +D CVSVAWDW++RG +PAG+ RE+ L+ +NR++ SLA E +L
Sbjct: 739 DGLYSMPHGDGLGKKPPWPTKDMLEDCRKMGYCPSVLILEPGDLVHINKGRLHAFRKMSTSGLPDKDCHFEQRKTMVASKGISGEEKMCVSVAWDWMYRGISPAGINREVCAILEGSTLNRKNNVSSLAIPELALL 874
BLAST of mRNA_S-ischiensis_contig108.1927.1 vs. uniprot
Match: A0A7S2NZI7_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NZI7_9STRA) HSP 1 Score: 116 bits (291), Expect = 5.160e-28 Identity = 59/137 (43.07%), Postives = 81/137 (59.12%), Query Frame = 3
Query: 6 DPLYEMPHGPG--EKPLWPTEEQIESLRELNYAPSVFTLEPGEFVHINKGRLHCFRK--------------------EEPLPGEDPGAPCVSVAWDWVFRGATPAGLARELATALDSVDVNRRHGAESLAPVETCIL 350
D LY +PHG G +KP WPT + + RE+NY PSVF L+P + VHINKGRLH FRK E+ L + CVS+AWDW++RG T AG+ RE++T L+ +NR++G ++LA E +L
Sbjct: 17 DALYGLPHGDGYVDKPEWPTHDVVSRWREMNYCPSVFILKPNQHVHINKGRLHAFRKMRCHALPQDDCHFDFRNSIKEKELFSDYTEINCVSIAWDWMYRGVTSAGINREVSTMLECSALNRKNGTQALAIPELTLL 153
BLAST of mRNA_S-ischiensis_contig108.1927.1 vs. uniprot
Match: A0A7S4EEL1_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EEL1_9STRA) HSP 1 Score: 116 bits (290), Expect = 8.080e-28 Identity = 60/136 (44.12%), Postives = 79/136 (58.09%), Query Frame = 3
Query: 6 DPLYEMPHGPG--EKPLWPTEEQIESLRELNYAPSVFTLEPGEFVHINKGRLHCFRK--EEPLPGEDPGAP-----------------CVSVAWDWVFRGATPAGLARELATALDSVDVNRRHGAESLAPVETCIL 350
D LY +PHG G +KP WP+ + +E + + Y PS+F LEPG+ VHINKGRLH FRK LP D A CVSVAWDW++RG + AG+ RE+ + L+ +NRR+G SLA E +L
Sbjct: 724 DGLYSVPHGDGLGKKPPWPSNDMVEECKTMGYCPSIFILEPGDLVHINKGRLHAFRKMSTSKLPDWDCHAKPRQNLVESKGMVGGEKLCVSVAWDWMYRGVSSAGINREVCSVLEGSTLNRRNGVTSLAIPELALL 859
BLAST of mRNA_S-ischiensis_contig108.1927.1 vs. uniprot
Match: A0A1E7FK00_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FK00_9STRA) HSP 1 Score: 110 bits (275), Expect = 8.450e-26 Identity = 56/134 (41.79%), Postives = 74/134 (55.22%), Query Frame = 3
Query: 12 LYEMPHGPG--EKPLWPTEEQIESLRELNYAPSVFTLEPGEFVHINKGRLHCFRK--EEPLPGEDPGAP-----------------CVSVAWDWVFRGATPAGLARELATALDSVDVNRRHGAESLAPVETCIL 350
LY +PHG G KP WPT + +E + + Y PS+ TL PGE +HINKGRLH FRK LP D A C+S+AWDW++RG T G+ RE+ T L+ +NR + +SLA E +L
Sbjct: 718 LYSVPHGDGLGSKPKWPTMDMVEECKRMGYCPSLLTLGPGELIHINKGRLHAFRKMATTKLPESDCFAEIRRNIIETKGLEGQEKLCISIAWDWMYRGVTSGGINREVCTVLEGSTLNRMNNVKSLAIPELALL 851
BLAST of mRNA_S-ischiensis_contig108.1927.1 vs. uniprot
Match: A0A7S3ZG35_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZG35_9EUKA) HSP 1 Score: 108 bits (269), Expect = 1.660e-25 Identity = 53/117 (45.30%), Postives = 71/117 (60.68%), Query Frame = 3
Query: 12 LYEMPHGPGEK----PLWPTEEQIESLRELNYAPSVFTLEPGEFVHINKGRLHCFRKEEPLPGEDPGAPCVSVAWDWVFRGATPAGLARELATALDSVDVNRRHGAESLAPVETCIL 350
++ +PH + PLWPT EQI LR + +PSVF LE G++VHIN+GRLH FRK P ED CVSVAWDW+ +G T G+ +E A+++ + NR SL + TC L
Sbjct: 229 IHRLPHDSSRRGQRIPLWPTAEQIRRLRRMGASPSVFVLEAGDYVHINRGRLHAFRKM--TPAEDSQV-CVSVAWDWLCQGVTTEGIEKEARKAMNNAERNRHKKISSLGIIRTCTL 342 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig108.1927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig108.1927.1 >prot_S-ischiensis_contig108.1927.1 ID=prot_S-ischiensis_contig108.1927.1|Name=mRNA_S-ischiensis_contig108.1927.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=110bp MPHGPGEKPLWPTEEQIESLRELNYAPSVFTLEPGEFVHINKGRLHCFRKback to top mRNA from alignment at S-ischiensis_contig108:174964..176614+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig108.1927.1 ID=mRNA_S-ischiensis_contig108.1927.1|Name=mRNA_S-ischiensis_contig108.1927.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1651bp|location=Sequence derived from alignment at S-ischiensis_contig108:174964..176614+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig108:174964..176614+ >mRNA_S-ischiensis_contig108.1927.1 ID=mRNA_S-ischiensis_contig108.1927.1|Name=mRNA_S-ischiensis_contig108.1927.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=660bp|location=Sequence derived from alignment at S-ischiensis_contig108:174964..176614+ (Schizocladia ischiensis KU_0333)back to top |