mRNA_S-ischiensis_contig108.1925.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig108.1925.1
Unique NamemRNA_S-ischiensis_contig108.1925.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig108.1925.1 vs. uniprot
Match: D8LCL4_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL4_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 4.890e-30
Identity = 66/125 (52.80%), Postives = 85/125 (68.00%), Query Frame = 1 
Query:  220 IPLPPPSTRHRYTIDKRERLVRADLS--GVRFVEQVDKEYILRLFEQPDVTVVIKGLAGGLNPLLWSWSYIAERCSQTMYHSFRRFSR--AAPGHPFIEDPDRHRGWVSMEISEYARYLSARAEA 582
            IP PP +T H+Y ID + RLVRAD S  G R ++ +D+ Y+L LFE+PDVTVVI GLA GL+P LW+  Y+ ERC + MYHSFRRF+R   A   PF+  P R   W SM + +Y RYL+  A+A
Sbjct:   12 IPGPPAATAHKYRIDMKNRLVRADFSKSGAR-IDPLDEAYVLGLFERPDVTVVINGLANGLDPHLWNTRYLNERCGEMMYHSFRRFTRPGGARRGPFVPIPVREEAWSSMRLRDYVRYLNKLADA 135
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BLAST of mRNA_S-ischiensis_contig108.1925.1 vs. uniprot
Match: A0A7S2B8L6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B8L6_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.910e-16
Identity = 44/111 (39.64%), Postives = 62/111 (55.86%), Query Frame = 1 
Query:  256 TIDKRERLVRADLSGVRFVEQVDKEYILRLFEQPDVTVVIKGLAGGLNPLLWSWSYIAERCSQTMYHSFRRF--SRAAPGHPFIEDPDRHRGWVSMEISEYARYLSARAEA 582
            T+D   R+VR D++G   ++  D +Y+ RL +QPDVT+++KGL  GL P LWS  Y+  RC   M H  R F  SR       +E       W SM +++Y  YL AR +A
Sbjct:    1 TVDPVNRVVRMDMAGKPCLDPDDDDYLHRLLDQPDVTLIVKGLGDGLTPHLWSEPYLKSRCGDLMLHKLRCFRGSRNKCAQDSVETE-----WKSMRLNDYMGYLEARQKA 106
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig108.1925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCL4_ECTSI4.890e-3052.80ATP-dependent DNA helicase n=1 Tax=Ectocarpus sili... [more]
A0A7S2B8L6_9STRA1.910e-1639.64Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig108contigS-ischiensis_contig108:167644..170953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.8
Seed ortholog evalue1.5e-27
Seed eggNOG ortholog2880.D8LCL4
KEGG koko:K15255
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032
Hectar predicted targeting categoryother localisation
Exons3
Model size650
Cds size648
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig108.1925.1prot_S-ischiensis_contig108.1925.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig108 167644..170951 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.3451898-CDS-S-ischiensis_contig108:167643..1679481622815573.3451898-CDS-S-ischiensis_contig108:167643..167948Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 167644..167948 +
1695739778.6471088-CDS-S-ischiensis_contig108:167643..1679481695739778.6471088-CDS-S-ischiensis_contig108:167643..167948Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 167644..167948 +
1622815573.357258-CDS-S-ischiensis_contig108:169707..1698511622815573.357258-CDS-S-ischiensis_contig108:169707..169851Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 169708..169851 +
1695739778.6623409-CDS-S-ischiensis_contig108:169707..1698511695739778.6623409-CDS-S-ischiensis_contig108:169707..169851Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 169708..169851 +
1622815573.3696656-CDS-S-ischiensis_contig108:170752..1709511622815573.3696656-CDS-S-ischiensis_contig108:170752..170951Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 170753..170951 +
1695739778.6803975-CDS-S-ischiensis_contig108:170752..1709511695739778.6803975-CDS-S-ischiensis_contig108:170752..170951Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 170753..170951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig108.1925.1

>prot_S-ischiensis_contig108.1925.1 ID=prot_S-ischiensis_contig108.1925.1|Name=mRNA_S-ischiensis_contig108.1925.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=216bp
RNENRKRIPKDEPEFVLRGTRQNLKRRKGTFPNASQCRRAVNRGRVGQDG
GPDVASDDDMAAANPAPPPPLEPIPLPPPSTRHRYTIDKRERLVRADLSG
VRFVEQVDKEYILRLFEQPDVTVVIKGLAGGLNPLLWSWSYIAERCSQTM
YHSFRRFSRAAPGHPFIEDPDRHRGWVSMEISEYARYLSARAEALQNPPV
IAGGSPDPAPTTAATT
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mRNA from alignment at S-ischiensis_contig108:167644..170953+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig108.1925.1 ID=mRNA_S-ischiensis_contig108.1925.1|Name=mRNA_S-ischiensis_contig108.1925.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3310bp|location=Sequence derived from alignment at S-ischiensis_contig108:167644..170953+ (Schizocladia ischiensis KU_0333)
CGCAACGAGAACAGGAAGAGGATCCCCAAGGACGAGCCGGAGTTTGTCCT
TCGGGGGACAAGGCAAAATCTCAAGAGGAGGAAAGGGACCTTCCCTAATG
CCTCCCAGTGTCGGCGGGCTGTGAATCGGGGCCGAGTGGGCCAGGACGGA
GGGCCGGACGTGGCGAGTGACGACGATATGGCGGCGGCCAACCCAGCCCC
GCCCCCGCCACTCGAGCCCATCCCGCTCCCTCCACCGTCGACGAGACATA
GATATACCATCGACAAGCGGGAGCGCTTGGTTCGGGCTGACCTCTCTGGT
GTCAGGTATGGCGTCGAATAAGCGCGTGCTGCCGGGTGTCCAATAGTTCC
CGCGTTTTTCTGCAAGTCTTCACTGATCAGGCCTCTATCTCACCAGCCAC
GCAGAGAATCGAATTATCCAGGTCTCTGACTGAATCGACACGTTTCCAGC
CGGCCGTTTGTTATCTATCATGTATAGCAATTCTCCGGCGTGTGCGTCGG
TCGATGCACGGCTTGGTCATCGCTGGCCAGTGGCGCAGAGGTGTTTTTTT
GGGAAACATGACAAAAGCTGACACCTGGCAAATTCAATGGCGAAAGTCTA
CTTCTGGGATGAAACTCGACTACCTTCGGGACTTTTCTGAAAAAGCCGAC
GACCTCGTGGAAACTGCAACATACTCTTAGATTCACCGTAGTGCGATCAC
ATTACAGTAGTGCATCGCGAGTGATGATCACACTGCATTAACGAGCACAG
AGTTTGGGACTACATCAGTGAAAACAGGGGTTCAGGCTGCATTAGCCAAC
ACAGGGGTTCGGGGTGGACTAGCAAATACATGGATTTAGGTTCGGGTTAG
AGTTAGGGGTCGATTTTGAGGTGATTTGTAGCTCATTGAATCGGCTTGCG
GTTCGGGTTGGTGCTAGGGTGGAGAGAGATGGCATGACGACGAAAATCGC
CCAAACGTCGACAGCAATTGTTGTTGGAATTTTGTCACCCTTCCGGGTTG
GTCTCGACTGTTGTCATTTTCCCATTTTTGCACTGCCAATCGAGCAGCCC
GAAGACCATTGTCCCAGTGTTCCTACTTCCTAGTGCACCTGTCCCGGTGA
AATGGTACTGTAGGTGACTAGATCAAGTCCAGCACCGCGTCTGCGTGTGT
TCTCAGTATTGACAGGAACAACACGGGGCGAGGTGCAGGCCACGTCACTG
GGATAAAGACCTCAACAGTGGCCCTTCCTTTTTAGCTCACCAGGGGAAGT
TGTGTGGGGAAGGGGAGAAAAGGAGGAGGGGGCGGGGGGAGGAAGAGGAA
GGAGGAGAAGTACAGCACAGAGCTCGAACACTTGGCACGCGGGAACCGAG
CAATTGGCATTTGGTTGGAAGAGAAGACACTCAGATGGGTCGTGCACCCC
CCCACCCCCCCCACCCCACTTGTTTTGATGCGGCACTTAGACCATTCGGA
GAGATCTCTCAGGGGTGTGCAGGCTGGGTTCCCGCCCTTTCCGGAGGTGC
AAACGAGTACTTAACTCCTTGCTATATGTACTTATTGGTTTGTCTTGCGA
CATAACCTTGCGTGCAATGCCGAAAGCCCTAAGTGAAACTTTGGGTTTGC
CCTCTGGCAGGAGTAGTTATTTAGCCATGGACTCTCGCGTCCCAACTAGG
CCGGGATGGAGCATGCCGGGTCTGTTTCTCATCAGAAGAAAGCCGAGCCC
TCCTTTGCATTATTTCCGCGCAAAACACGCTGCACCGGGTGCCAGTGATG
GAATATCGATCAGTAGACAGTTGCAGGGCTCGACTGATTTAGTGGGTGGC
GCTACTGGCTTCTTGGATTTATGCAGTGCGGGTCAAACTATCGCATATCG
ACCATCGATAGAGATATAGACCAGTACTGTCGAAAAATAGGTTGATTTGC
TTAGATATTCCATCACTGGCACCGGGTGCCTTCTCTCTCCCTCCCTCTCT
CTCTCTCTCTCTCTCTCCCCCCCCCTCTCCCTCTCCCTCTCCCTCTCTCA
TCGCAGTGGAGGGCCGACGAACAAACAACCATGCGTGCATTGCATCCCCC
TTCTCCCCAAAAAGGTTCGTGGAGCAGGTTGACAAGGAGTACATCCTGCG
GCTGTTTGAGCAGCCCGATGTCACCGTGGTGATCAAGGGCCTGGCGGGAG
GCCTCAACCCCTTGCTCTGGTCCTGGTCCTACATCGCCGAGCGTTGCAGC
CAGACAATGTGAGTCCCCCCCCCGGCAGTGATGGAATATCGATCAGTAGA
TAGCTGTCGGGCTCGACTGATTTTGTGGTTGGCGTTGCTAACTACTTGGA
TTTAGTGTGGGTCAAACTATCGAACTTCGACTATCGATAGATATGTGGAT
CAGTGATGTCGATAAATAGGTTGATTTGCTTAGATATTCCATCACTCACT
CCCTCCCTCTTCCCTTCCCCTGCAGACAGGGTTGGCACTTAACCCCTAAG
TGGTGCCCTTTTAGGCCCTTAATTAGAGGTAATTAGGGGCAATTAGACCT
AGAATGAAGACTAATTGGAGCCTAATTAACCTCTAAGCATCAACCCTTCC
CCTGCAGGTACCACTCCTTCCGCAGATTCTGCCGGGCCCTTAGTTAGAGG
TAATTGGGGGTAGTTAAACATAAAATGAAGCTAGTACAGCCTAATTGACC
TCTAAGTGCCAACCCTGCCTGCAGGTACCACTCCTTCCGCAGTAGTTAGA
CCGAAAATGAAGACTAATTCGAGCCTAACTAACCTCTAAGTGCCAACCAC
ATTAGAGGTAACTAGGGGCAATTAGGCCTAAAATGAAGACTAATTGGAGC
CTAATTAACCTCTAGGCACCTACCCTTCCCCTGCAGGTACCACTCCTTCC
GCAGATTCTCCCGGGCCCTCAGTTAGAGGTAAATAGGGGTAGTTGGCCAT
AAAATGAAGACTACTGTAGTACAGCCTATTTGACCTCTAAGTGCCAACCC
TGCCTGCAGGTACCACTCCTTCCGCAGTAATTAGGCCTAGAATGAAGACT
AACTAGAGCCTAACTAACCTGTAAGTGCCAACCACGTTAGAGGTAATTAG
GGGCAATTACACCTAAAATGAAGCCAACCAACCTCTAACCGCCAACCCTT
CCCCCGCAGGTACCACTCCTTCCGCAGGTTCTCCCGGGCCGCCCCGGGGC
ACCCCTTCATCGAGGACCCCGACCGGCACAGGGGCTGGGTCAGCATGGAG
ATATCAGAGTACGCACGCTACCTCTCCGCCAGAGCCGAGGCGCTGCAAAA
CCCCCCAGTCATTGCCGGCGGCAGCCCCGACCCTGCTCCCACCACCGCTG
CCACCACCGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig108:167644..170953+

>mRNA_S-ischiensis_contig108.1925.1 ID=mRNA_S-ischiensis_contig108.1925.1|Name=mRNA_S-ischiensis_contig108.1925.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1296bp|location=Sequence derived from alignment at S-ischiensis_contig108:167644..170953+ (Schizocladia ischiensis KU_0333)
CGCAACGAGAACAGGAAGAGGATCCCCAAGGACGAGCCGGAGTTTGTCCT
TCGGGGGACAAGGCAAAATCTCAAGAGGAGGAAAGGGACCTTCCCTAATG
CCTCCCAGTGTCGGCGGGCTGTGAATCGGGGCCGAGTGGGCCAGGACGGA
GGGCCGGACGTGGCGAGTGACGACGATATGGCGGCGGCCAACCCAGCCCC
GCCCCCGCCACTCGAGCCCATCCCGCTCCCTCCACCGTCGACGAGACATA
GATATACCATCGACAAGCGGGAGCGCTTGGTTCGGGCTGACCTCTCTGGT
GTCAGCGCAACGAGAACAGGAAGAGGATCCCCAAGGACGAGCCGGAGTTT
GTCCTTCGGGGGACAAGGCAAAATCTCAAGAGGAGGAAAGGGACCTTCCC
TAATGCCTCCCAGTGTCGGCGGGCTGTGAATCGGGGCCGAGTGGGCCAGG
ACGGAGGGCCGGACGTGGCGAGTGACGACGATATGGCGGCGGCCAACCCA
GCCCCGCCCCCGCCACTCGAGCCCATCCCGCTCCCTCCACCGTCGACGAG
ACATAGATATACCATCGACAAGCGGGAGCGCTTGGTTCGGGCTGACCTCT
CTGGTGTCAGGTTCGTGGAGCAGGTTGACAAGGAGTACATCCTGCGGCTG
TTTGAGCAGCCCGATGTCACCGTGGTGATCAAGGGCCTGGCGGGAGGCCT
CAACCCCTTGCTCTGGTCCTGGTCCTACATCGCCGAGCGTTGCAGCCAGA
CAATGTTCGTGGAGCAGGTTGACAAGGAGTACATCCTGCGGCTGTTTGAG
CAGCCCGATGTCACCGTGGTGATCAAGGGCCTGGCGGGAGGCCTCAACCC
CTTGCTCTGGTCCTGGTCCTACATCGCCGAGCGTTGCAGCCAGACAATGT
ACCACTCCTTCCGCAGGTTCTCCCGGGCCGCCCCGGGGCACCCCTTCATC
GAGGACCCCGACCGGCACAGGGGCTGGGTCAGCATGGAGATATCAGAGTA
CGCACGCTACCTCTCCGCCAGAGCCGAGGCGCTGCAAAACCCCCCAGTCA
TTGCCGGCGGCAGCCCCGACCCTGCTCCCACCACCGCTGCCACCACCGTA
CCACTCCTTCCGCAGGTTCTCCCGGGCCGCCCCGGGGCACCCCTTCATCG
AGGACCCCGACCGGCACAGGGGCTGGGTCAGCATGGAGATATCAGAGTAC
GCACGCTACCTCTCCGCCAGAGCCGAGGCGCTGCAAAACCCCCCAGTCAT
TGCCGGCGGCAGCCCCGACCCTGCTCCCACCACCGCTGCCACCACC
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