mRNA_S-ischiensis_contig108.1924.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig108.1924.1
Unique NamemRNA_S-ischiensis_contig108.1924.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig108.1924.1 vs. uniprot
Match: D7FSR6_ECTSI (Triosephosphate isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSR6_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 5.420e-12
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 3 
Query:    3 DLMACPDIDGALVGGASLVAESFARIIGFKTPVSA 107
            +LMACPDIDGALVGGASLVAE FARI+GFK PVSA
Sbjct:  221 ELMACPDIDGALVGGASLVAEKFARIVGFKAPVSA 255
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BLAST of mRNA_S-ischiensis_contig108.1924.1 vs. uniprot
Match: A0A7C3Z7S6_9FIRM (Triosephosphate isomerase (Fragment) n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A7C3Z7S6_9FIRM)

HSP 1 Score: 53.9 bits (128), Expect = 1.140e-8
Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = 3 
Query:    6 LMACPDIDGALVGGASLVAESFARIIGFKTP 98
            LMACPDIDGALVGGASL A+SFA+I GF  P
Sbjct:   37 LMACPDIDGALVGGASLKADSFAKIAGFALP 67
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BLAST of mRNA_S-ischiensis_contig108.1924.1 vs. uniprot
Match: A0A8J5XLA3_DIALT (Triosephosphate isomerase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XLA3_DIALT)

HSP 1 Score: 55.8 bits (133), Expect = 4.430e-8
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = 3 
Query:    3 DLMACPDIDGALVGGASLVAESFARIIGFK 92
            +LMACPDIDGALVGGASLVA+ FARI+ FK
Sbjct:  261 ELMACPDIDGALVGGASLVADKFARIVNFK 290
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BLAST of mRNA_S-ischiensis_contig108.1924.1 vs. uniprot
Match: Q15GC7_GUITH (Triosephosphate isomerase (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=Q15GC7_GUITH)

HSP 1 Score: 53.9 bits (128), Expect = 2.360e-7
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 3 
Query:    6 LMACPDIDGALVGGASLVAESFARIIGFK 92
            LMACPDIDGALVGGASLV E FARI+ FK
Sbjct:  346 LMACPDIDGALVGGASLVGEKFARIMNFK 374
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BLAST of mRNA_S-ischiensis_contig108.1924.1 vs. uniprot
Match: A0A835ZJI0_9STRA (Triosephosphate isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJI0_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 2.660e-7
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 3 
Query:    3 DLMACPDIDGALVGGASLVAESFARIIGFK 92
            DLMACPDIDGALVGGASLVA+ FARI  F+
Sbjct:  224 DLMACPDIDGALVGGASLVADKFARICRFQ 253
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BLAST of mRNA_S-ischiensis_contig108.1924.1 vs. uniprot
Match: A0A7R9TNM8_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TNM8_9VIRI)

HSP 1 Score: 52.0 bits (123), Expect = 9.340e-7
Identity = 24/34 (70.59%), Postives = 27/34 (79.41%), Query Frame = 3 
Query:    3 DLMACPDIDGALVGGASLVAESFARIIGFKTPVS 104
            +LMACPDIDG LVGGASL A+SFARI  F  P +
Sbjct:  190 ELMACPDIDGVLVGGASLKADSFARIAAFVRPTA 223
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BLAST of mRNA_S-ischiensis_contig108.1924.1 vs. uniprot
Match: A0A7S0HT94_9CRYP (Triosephosphate isomerase n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HT94_9CRYP)

HSP 1 Score: 52.0 bits (123), Expect = 9.900e-7
Identity = 24/29 (82.76%), Postives = 25/29 (86.21%), Query Frame = 3 
Query:    6 LMACPDIDGALVGGASLVAESFARIIGFK 92
            LMACPDIDGALVGGASLV E FARI+ F 
Sbjct:  233 LMACPDIDGALVGGASLVGEKFARIMNFN 261
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BLAST of mRNA_S-ischiensis_contig108.1924.1 vs. uniprot
Match: A0A7S3I0X6_9SPIT (Triosephosphate isomerase n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3I0X6_9SPIT)

HSP 1 Score: 52.0 bits (123), Expect = 1.020e-6
Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 3 
Query:    3 DLMACPDIDGALVGGASLVAESFARIIGFK 92
            DLM CPDIDGALVGGASL +E FARII F+
Sbjct:  241 DLMKCPDIDGALVGGASLQSEGFARIINFE 270
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BLAST of mRNA_S-ischiensis_contig108.1924.1 vs. uniprot
Match: A0A6T8PLZ1_HEMAN (Triosephosphate isomerase n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8PLZ1_HEMAN)

HSP 1 Score: 52.0 bits (123), Expect = 1.070e-6
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 3 
Query:    6 LMACPDIDGALVGGASLVAESFARIIGFK 92
            LMACPDIDGALVGGASLVA+ F +II FK
Sbjct:  260 LMACPDIDGALVGGASLVADKFDKIINFK 288
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BLAST of mRNA_S-ischiensis_contig108.1924.1 vs. uniprot
Match: A0A4D9CPZ8_9STRA (Triosephosphate isomerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CPZ8_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.090e-6
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 3 
Query:    3 DLMACPDIDGALVGGASLVAESFARIIGFK 92
            +LMA PDIDGALVGGASLV E FARII FK
Sbjct:  273 ELMAMPDIDGALVGGASLVGEKFARIINFK 302
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig108.1924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSR6_ECTSI5.420e-1288.57Triosephosphate isomerase n=2 Tax=Ectocarpus TaxID... [more]
A0A7C3Z7S6_9FIRM1.140e-880.65Triosephosphate isomerase (Fragment) n=1 Tax=Firmi... [more]
A0A8J5XLA3_DIALT4.430e-883.33Triosephosphate isomerase n=1 Tax=Diacronema luthe... [more]
Q15GC7_GUITH2.360e-786.21Triosephosphate isomerase (Fragment) n=1 Tax=Guill... [more]
A0A835ZJI0_9STRA2.660e-783.33Triosephosphate isomerase n=1 Tax=Tribonema minus ... [more]
A0A7R9TNM8_9VIRI9.340e-770.59Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A7S0HT94_9CRYP9.900e-782.76Triosephosphate isomerase n=1 Tax=Hanusia phi TaxI... [more]
A0A7S3I0X6_9SPIT1.020e-680.00Triosephosphate isomerase n=1 Tax=Favella ehrenber... [more]
A0A6T8PLZ1_HEMAN1.070e-682.76Triosephosphate isomerase n=1 Tax=Hemiselmis ander... [more]
A0A4D9CPZ8_9STRA1.090e-683.33Triosephosphate isomerase n=1 Tax=Nannochloropsis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig108contigS-ischiensis_contig108:153708..153817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size110
Cds size102
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.2884488-UTR-S-ischiensis_contig108:153707..1537151622815573.2884488-UTR-S-ischiensis_contig108:153707..153715Schizocladia ischiensis KU_0333UTRS-ischiensis_contig108 153708..153715 +
1695739778.6269066-UTR-S-ischiensis_contig108:153707..1537151695739778.6269066-UTR-S-ischiensis_contig108:153707..153715Schizocladia ischiensis KU_0333UTRS-ischiensis_contig108 153708..153715 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.3013005-CDS-S-ischiensis_contig108:153715..1538171622815573.3013005-CDS-S-ischiensis_contig108:153715..153817Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 153716..153817 +
1695739778.636827-CDS-S-ischiensis_contig108:153715..1538171695739778.636827-CDS-S-ischiensis_contig108:153715..153817Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 153716..153817 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig108.1924.1prot_S-ischiensis_contig108.1924.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig108 153716..153817 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig108.1924.1

>prot_S-ischiensis_contig108.1924.1 ID=prot_S-ischiensis_contig108.1924.1|Name=mRNA_S-ischiensis_contig108.1924.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=34bp
MACPDIDGALVGGASLVAESFARIIGFKTPVSA*
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mRNA from alignment at S-ischiensis_contig108:153708..153817+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig108.1924.1 ID=mRNA_S-ischiensis_contig108.1924.1|Name=mRNA_S-ischiensis_contig108.1924.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=110bp|location=Sequence derived from alignment at S-ischiensis_contig108:153708..153817+ (Schizocladia ischiensis KU_0333)
ACGACCTCATGGCGTGCCCGGACATCGACGGGGCCCTCGTCGGCGGCGCT
TCCCTCGTTGCGGAGAGCTTTGCACGCATCATCGGTTTCAAGACCCCTGT
CAGCGCCTGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig108:153708..153817+

>mRNA_S-ischiensis_contig108.1924.1 ID=mRNA_S-ischiensis_contig108.1924.1|Name=mRNA_S-ischiensis_contig108.1924.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=204bp|location=Sequence derived from alignment at S-ischiensis_contig108:153708..153817+ (Schizocladia ischiensis KU_0333)
ATGGCGTGCCCGGACATCGACGGGGCCCTCGTCGGCGGCGCTTCCCTCGT
TGCGGAGAGCTTTGCACGCATCATCGGTTTCAAGACCCCTGTCAGCGCCT
GAATGGCGTGCCCGGACATCGACGGGGCCCTCGTCGGCGGCGCTTCCCTC
GTTGCGGAGAGCTTTGCACGCATCATCGGTTTCAAGACCCCTGTCAGCGC
CTGA
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