mRNA_S-ischiensis_contig108.1919.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig108.1919.1 vs. uniprot
Match: A0A094G7N8_9PEZI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Pseudogymnoascus sp. VKM F-4516 (FW-969) TaxID=1420910 RepID=A0A094G7N8_9PEZI) HSP 1 Score: 80.9 bits (198), Expect = 5.370e-16 Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 1
Query: 4 PYAIHMAAARRLRRYLKETLSLGIKIVGTAKPWSRPVLEGYCDADYGSDLSSRRSTTGYVYYLAQGPIVWHSKMQTIVTQSST 252
P H+ A + +YL +T LGI + T + + L GYCDADY DL++ +ST GY++YLA+GPI+W SK+Q+I+ QS+T
Sbjct: 326 PSIEHVNAINNIFKYLSKTKDLGI--IYTREGDNTDYLSGYCDADYAGDLATAKSTNGYIFYLAKGPIMWKSKLQSIIAQSTT 406
BLAST of mRNA_S-ischiensis_contig108.1919.1 vs. uniprot
Match: UPI001E694A86 (secreted RxLR effector protein 161-like n=1 Tax=Trifolium pratense TaxID=57577 RepID=UPI001E694A86) HSP 1 Score: 75.5 bits (184), Expect = 1.160e-15 Identity = 38/76 (50.00%), Postives = 47/76 (61.84%), Query Frame = 1
Query: 1 KPYAIHMAAARRLRRYLKETLSLGIKIVGTAKPWSRPVLEGYCDADYGSDLSSRRSTTGYVYYLAQGPIVWHSKMQ 228
KP H+AA +R+ RYLK TLS G+ K + LEGYCD+DY DL R+STTG+V+ L G I W SK Q
Sbjct: 28 KPTEAHVAAVKRIMRYLKGTLSFGLVYKSKCKTDMK--LEGYCDSDYVGDLDDRKSTTGFVFMLGSGAISWSSKKQ 101
BLAST of mRNA_S-ischiensis_contig108.1919.1 vs. uniprot
Match: A0A2K3KKY6_TRIPR (Type I inositol 145-trisphosphate 5-phosphatase 12-like protein (Fragment) n=2 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3KKY6_TRIPR) HSP 1 Score: 77.8 bits (190), Expect = 1.300e-15 Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 1
Query: 1 KPYAIHMAAARRLRRYLKETLSLGIKIVGTAKPWSRPVLEGYCDADYGSDLSSRRSTTGYVYYLAQGPIVWHSKMQTIVTQSST 252
KP +H+ AA+R+ RYLK T+SLGI K S +L+G+ D+DY D+ RRST+GYV+ L I W SK Q IVT S+T
Sbjct: 61 KPTDMHLTAAKRILRYLKGTMSLGILY----KRGSELLLQGWTDSDYAGDIDDRRSTSGYVFKLGSSAISWSSKKQPIVTLSTT 140
BLAST of mRNA_S-ischiensis_contig108.1919.1 vs. uniprot
Match: A0A2Z6N4W8_TRISU (Integrase catalytic domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6N4W8_TRISU) HSP 1 Score: 79.7 bits (195), Expect = 1.540e-15 Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = 1
Query: 1 KPYAIHMAAARRLRRYLKETLSLGIKIVGTAKPWSRPVLEGYCDADYGSDLSSRRSTTGYVYYLAQGPIVWHSKMQTIVTQSST 252
+P +H+AAA+R+ RYLK T+ LGI +K LEG+ D+DY D+ R++T+GYV+ A GPI W SK Q IVT S+T
Sbjct: 1055 RPTKLHLAAAKRVLRYLKGTIGLGIWYKNVSKDVK---LEGWTDSDYAGDMDDRKNTSGYVFSYASGPISWSSKKQPIVTLSTT 1135
BLAST of mRNA_S-ischiensis_contig108.1919.1 vs. uniprot
Match: A0A392QCY3_9FABA (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392QCY3_9FABA) HSP 1 Score: 75.9 bits (185), Expect = 1.630e-15 Identity = 38/84 (45.24%), Postives = 55/84 (65.48%), Query Frame = 1
Query: 1 KPYAIHMAAARRLRRYLKETLSLGIKIVGTAKPWSRPVLEGYCDADYGSDLSSRRSTTGYVYYLAQGPIVWHSKMQTIVTQSST 252
+P +HMAA +R+ RYLK TLSLGI + K + +++G+ D+DY D R+ST+GYV+ + + I W SK Q IVT S+T
Sbjct: 23 RPTEMHMAAVKRVLRYLKGTLSLGI--LYKCKTGNDLIMQGWSDSDYAGDYDDRKSTSGYVFTMGESAICWSSKKQPIVTLSTT 104
BLAST of mRNA_S-ischiensis_contig108.1919.1 vs. uniprot
Match: A0A5N5FPD5_9ROSA (Uncharacterized protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5FPD5_9ROSA) HSP 1 Score: 74.7 bits (182), Expect = 1.820e-15 Identity = 37/81 (45.68%), Postives = 51/81 (62.96%), Query Frame = 1
Query: 4 PYAIHMAAARRLRRYLKETLSLGIKIVGTAKPWSRPVLEGYCDADYGSDLSSRRSTTGYVYYLAQGPIVWHSKMQTIVTQS 246
P +H+AAA+R+ RYLK T+SLGI + L GY D+DY DL R+ST+GY++ L+ G + W SK Q +VT S
Sbjct: 14 PIEMHLAAAKRVLRYLKGTISLGILY----RKGGHVELRGYSDSDYAGDLDDRKSTSGYLFMLSSGAMCWSSKKQPVVTSS 90
BLAST of mRNA_S-ischiensis_contig108.1919.1 vs. uniprot
Match: A0A392Q509_9FABA (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392Q509_9FABA) HSP 1 Score: 74.7 bits (182), Expect = 4.210e-15 Identity = 37/84 (44.05%), Postives = 53/84 (63.10%), Query Frame = 1
Query: 1 KPYAIHMAAARRLRRYLKETLSLGIKIVGTAKPWSRPVLEGYCDADYGSDLSSRRSTTGYVYYLAQGPIVWHSKMQTIVTQSST 252
+P +H+AAA+R+ RYLK T++LGI K VL+G+ D+DY DL R+ST+GY++ I W SK Q I+T S+T
Sbjct: 16 RPTEMHLAAAKRILRYLKSTMNLGILY----KRGESEVLQGWTDSDYAGDLDDRKSTSGYIFKFGSSAISWSSKKQPILTLSTT 95
BLAST of mRNA_S-ischiensis_contig108.1919.1 vs. uniprot
Match: A0A5N5FQC6_9ROSA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5FQC6_9ROSA) HSP 1 Score: 77.0 bits (188), Expect = 6.230e-15 Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 1
Query: 4 PYAIHMAAARRLRRYLKETLSLGIKIVGTAKPWSRPVLEGYCDADYGSDLSSRRSTTGYVYYLAQGPIVWHSKMQTIVTQSST 252
P +H+AAA+R+ RYLK T+SLGI K L GY D+DY DL R+ST+GY++ L+ G + W SK Q +VT S+T
Sbjct: 114 PTEMHLAAAKRVLRYLKGTISLGILY----KKGGCTELRGYSDSDYAGDLDDRKSTSGYLFMLSSGAVCWSSKKQPVVTLSTT 192
BLAST of mRNA_S-ischiensis_contig108.1919.1 vs. uniprot
Match: A0A0J7K4U5_LASNI (Integrase core domain protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K4U5_LASNI) HSP 1 Score: 75.9 bits (185), Expect = 8.190e-15 Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = 1
Query: 16 HMAAARRLRRYLKETLSLGIKIVGTAKPWSRPVLEGYCDADYGSDLSSRRSTTGYVYYLAQGPIVWHSKMQTIVTQSST 252
H A +R+ +YLK TL LGI+ G+ K + V GY DADY +D+ +RRSTTGYV+ L GP+ W S+ Q +VT S+T
Sbjct: 85 HWLAVKRIVKYLKGTLDLGIRY-GSGKSLLQVV--GYSDADYANDIETRRSTTGYVFMLVNGPVTWSSQRQKLVTLSTT 160
BLAST of mRNA_S-ischiensis_contig108.1919.1 vs. uniprot
Match: A0A2Z6NSH0_TRISU (Integrase catalytic domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NSH0_TRISU) HSP 1 Score: 77.4 bits (189), Expect = 9.930e-15 Identity = 40/84 (47.62%), Postives = 54/84 (64.29%), Query Frame = 1
Query: 1 KPYAIHMAAARRLRRYLKETLSLGIKIVGTAKPWSRPVLEGYCDADYGSDLSSRRSTTGYVYYLAQGPIVWHSKMQTIVTQSST 252
+P +H+AAA+R+ RYLK T+ GI +K LEG+ D+DY D+ R+ST+GYV+ A GPI W SK Q IVT S+T
Sbjct: 960 RPTELHLAAAKRVLRYLKGTIGSGIWYKNVSKDVK---LEGWTDSDYAGDMDDRKSTSGYVFSYAYGPISWLSKKQPIVTLSTT 1040 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig108.1919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig108.1919.1 >prot_S-ischiensis_contig108.1919.1 ID=prot_S-ischiensis_contig108.1919.1|Name=mRNA_S-ischiensis_contig108.1919.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=78bp MAAARRLRRYLKETLSLGIKIVGTAKPWSRPVLEGYCDADYGSDLSSRRSback to top mRNA from alignment at S-ischiensis_contig108:111089..111340+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig108.1919.1 ID=mRNA_S-ischiensis_contig108.1919.1|Name=mRNA_S-ischiensis_contig108.1919.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=252bp|location=Sequence derived from alignment at S-ischiensis_contig108:111089..111340+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig108:111089..111340+ >mRNA_S-ischiensis_contig108.1919.1 ID=mRNA_S-ischiensis_contig108.1919.1|Name=mRNA_S-ischiensis_contig108.1919.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=468bp|location=Sequence derived from alignment at S-ischiensis_contig108:111089..111340+ (Schizocladia ischiensis KU_0333)back to top |