mRNA_S-ischiensis_contig108.1919.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig108.1919.1
Unique NamemRNA_S-ischiensis_contig108.1919.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig108.1919.1 vs. uniprot
Match: A0A094G7N8_9PEZI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Pseudogymnoascus sp. VKM F-4516 (FW-969) TaxID=1420910 RepID=A0A094G7N8_9PEZI)

HSP 1 Score: 80.9 bits (198), Expect = 5.370e-16
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 1
Query:    4 PYAIHMAAARRLRRYLKETLSLGIKIVGTAKPWSRPVLEGYCDADYGSDLSSRRSTTGYVYYLAQGPIVWHSKMQTIVTQSST 252
            P   H+ A   + +YL +T  LGI  + T +  +   L GYCDADY  DL++ +ST GY++YLA+GPI+W SK+Q+I+ QS+T
Sbjct:  326 PSIEHVNAINNIFKYLSKTKDLGI--IYTREGDNTDYLSGYCDADYAGDLATAKSTNGYIFYLAKGPIMWKSKLQSIIAQSTT 406          
BLAST of mRNA_S-ischiensis_contig108.1919.1 vs. uniprot
Match: UPI001E694A86 (secreted RxLR effector protein 161-like n=1 Tax=Trifolium pratense TaxID=57577 RepID=UPI001E694A86)

HSP 1 Score: 75.5 bits (184), Expect = 1.160e-15
Identity = 38/76 (50.00%), Postives = 47/76 (61.84%), Query Frame = 1
Query:    1 KPYAIHMAAARRLRRYLKETLSLGIKIVGTAKPWSRPVLEGYCDADYGSDLSSRRSTTGYVYYLAQGPIVWHSKMQ 228
            KP   H+AA +R+ RYLK TLS G+      K   +  LEGYCD+DY  DL  R+STTG+V+ L  G I W SK Q
Sbjct:   28 KPTEAHVAAVKRIMRYLKGTLSFGLVYKSKCKTDMK--LEGYCDSDYVGDLDDRKSTTGFVFMLGSGAISWSSKKQ 101          
BLAST of mRNA_S-ischiensis_contig108.1919.1 vs. uniprot
Match: A0A2K3KKY6_TRIPR (Type I inositol 145-trisphosphate 5-phosphatase 12-like protein (Fragment) n=2 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3KKY6_TRIPR)

HSP 1 Score: 77.8 bits (190), Expect = 1.300e-15
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 1
Query:    1 KPYAIHMAAARRLRRYLKETLSLGIKIVGTAKPWSRPVLEGYCDADYGSDLSSRRSTTGYVYYLAQGPIVWHSKMQTIVTQSST 252
            KP  +H+ AA+R+ RYLK T+SLGI      K  S  +L+G+ D+DY  D+  RRST+GYV+ L    I W SK Q IVT S+T
Sbjct:   61 KPTDMHLTAAKRILRYLKGTMSLGILY----KRGSELLLQGWTDSDYAGDIDDRRSTSGYVFKLGSSAISWSSKKQPIVTLSTT 140          
BLAST of mRNA_S-ischiensis_contig108.1919.1 vs. uniprot
Match: A0A2Z6N4W8_TRISU (Integrase catalytic domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6N4W8_TRISU)

HSP 1 Score: 79.7 bits (195), Expect = 1.540e-15
Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = 1
Query:    1 KPYAIHMAAARRLRRYLKETLSLGIKIVGTAKPWSRPVLEGYCDADYGSDLSSRRSTTGYVYYLAQGPIVWHSKMQTIVTQSST 252
            +P  +H+AAA+R+ RYLK T+ LGI     +K      LEG+ D+DY  D+  R++T+GYV+  A GPI W SK Q IVT S+T
Sbjct: 1055 RPTKLHLAAAKRVLRYLKGTIGLGIWYKNVSKDVK---LEGWTDSDYAGDMDDRKNTSGYVFSYASGPISWSSKKQPIVTLSTT 1135          
BLAST of mRNA_S-ischiensis_contig108.1919.1 vs. uniprot
Match: A0A392QCY3_9FABA (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392QCY3_9FABA)

HSP 1 Score: 75.9 bits (185), Expect = 1.630e-15
Identity = 38/84 (45.24%), Postives = 55/84 (65.48%), Query Frame = 1
Query:    1 KPYAIHMAAARRLRRYLKETLSLGIKIVGTAKPWSRPVLEGYCDADYGSDLSSRRSTTGYVYYLAQGPIVWHSKMQTIVTQSST 252
            +P  +HMAA +R+ RYLK TLSLGI  +   K  +  +++G+ D+DY  D   R+ST+GYV+ + +  I W SK Q IVT S+T
Sbjct:   23 RPTEMHMAAVKRVLRYLKGTLSLGI--LYKCKTGNDLIMQGWSDSDYAGDYDDRKSTSGYVFTMGESAICWSSKKQPIVTLSTT 104          
BLAST of mRNA_S-ischiensis_contig108.1919.1 vs. uniprot
Match: A0A5N5FPD5_9ROSA (Uncharacterized protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5FPD5_9ROSA)

HSP 1 Score: 74.7 bits (182), Expect = 1.820e-15
Identity = 37/81 (45.68%), Postives = 51/81 (62.96%), Query Frame = 1
Query:    4 PYAIHMAAARRLRRYLKETLSLGIKIVGTAKPWSRPVLEGYCDADYGSDLSSRRSTTGYVYYLAQGPIVWHSKMQTIVTQS 246
            P  +H+AAA+R+ RYLK T+SLGI      +      L GY D+DY  DL  R+ST+GY++ L+ G + W SK Q +VT S
Sbjct:   14 PIEMHLAAAKRVLRYLKGTISLGILY----RKGGHVELRGYSDSDYAGDLDDRKSTSGYLFMLSSGAMCWSSKKQPVVTSS 90          
BLAST of mRNA_S-ischiensis_contig108.1919.1 vs. uniprot
Match: A0A392Q509_9FABA (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392Q509_9FABA)

HSP 1 Score: 74.7 bits (182), Expect = 4.210e-15
Identity = 37/84 (44.05%), Postives = 53/84 (63.10%), Query Frame = 1
Query:    1 KPYAIHMAAARRLRRYLKETLSLGIKIVGTAKPWSRPVLEGYCDADYGSDLSSRRSTTGYVYYLAQGPIVWHSKMQTIVTQSST 252
            +P  +H+AAA+R+ RYLK T++LGI      K     VL+G+ D+DY  DL  R+ST+GY++      I W SK Q I+T S+T
Sbjct:   16 RPTEMHLAAAKRILRYLKSTMNLGILY----KRGESEVLQGWTDSDYAGDLDDRKSTSGYIFKFGSSAISWSSKKQPILTLSTT 95          
BLAST of mRNA_S-ischiensis_contig108.1919.1 vs. uniprot
Match: A0A5N5FQC6_9ROSA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5FQC6_9ROSA)

HSP 1 Score: 77.0 bits (188), Expect = 6.230e-15
Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 1
Query:    4 PYAIHMAAARRLRRYLKETLSLGIKIVGTAKPWSRPVLEGYCDADYGSDLSSRRSTTGYVYYLAQGPIVWHSKMQTIVTQSST 252
            P  +H+AAA+R+ RYLK T+SLGI      K      L GY D+DY  DL  R+ST+GY++ L+ G + W SK Q +VT S+T
Sbjct:  114 PTEMHLAAAKRVLRYLKGTISLGILY----KKGGCTELRGYSDSDYAGDLDDRKSTSGYLFMLSSGAVCWSSKKQPVVTLSTT 192          
BLAST of mRNA_S-ischiensis_contig108.1919.1 vs. uniprot
Match: A0A0J7K4U5_LASNI (Integrase core domain protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K4U5_LASNI)

HSP 1 Score: 75.9 bits (185), Expect = 8.190e-15
Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = 1
Query:   16 HMAAARRLRRYLKETLSLGIKIVGTAKPWSRPVLEGYCDADYGSDLSSRRSTTGYVYYLAQGPIVWHSKMQTIVTQSST 252
            H  A +R+ +YLK TL LGI+  G+ K   + V  GY DADY +D+ +RRSTTGYV+ L  GP+ W S+ Q +VT S+T
Sbjct:   85 HWLAVKRIVKYLKGTLDLGIRY-GSGKSLLQVV--GYSDADYANDIETRRSTTGYVFMLVNGPVTWSSQRQKLVTLSTT 160          
BLAST of mRNA_S-ischiensis_contig108.1919.1 vs. uniprot
Match: A0A2Z6NSH0_TRISU (Integrase catalytic domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NSH0_TRISU)

HSP 1 Score: 77.4 bits (189), Expect = 9.930e-15
Identity = 40/84 (47.62%), Postives = 54/84 (64.29%), Query Frame = 1
Query:    1 KPYAIHMAAARRLRRYLKETLSLGIKIVGTAKPWSRPVLEGYCDADYGSDLSSRRSTTGYVYYLAQGPIVWHSKMQTIVTQSST 252
            +P  +H+AAA+R+ RYLK T+  GI     +K      LEG+ D+DY  D+  R+ST+GYV+  A GPI W SK Q IVT S+T
Sbjct:  960 RPTELHLAAAKRVLRYLKGTIGSGIWYKNVSKDVK---LEGWTDSDYAGDMDDRKSTSGYVFSYAYGPISWLSKKQPIVTLSTT 1040          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig108.1919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A094G7N8_9PEZI5.370e-1645.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001E694A861.160e-1550.00secreted RxLR effector protein 161-like n=1 Tax=Tr... [more]
A0A2K3KKY6_TRIPR1.300e-1548.81Type I inositol 145-trisphosphate 5-phosphatase 12... [more]
A0A2Z6N4W8_TRISU1.540e-1547.62Integrase catalytic domain-containing protein n=1 ... [more]
A0A392QCY3_9FABA1.630e-1545.24Copia-type polyprotein (Fragment) n=1 Tax=Trifoliu... [more]
A0A5N5FPD5_9ROSA1.820e-1545.68Uncharacterized protein n=1 Tax=Pyrus ussuriensis ... [more]
A0A392Q509_9FABA4.210e-1544.05Copia-type polyprotein (Fragment) n=1 Tax=Trifoliu... [more]
A0A5N5FQC6_9ROSA6.230e-1546.99Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0J7K4U5_LASNI8.190e-1549.37Integrase core domain protein n=1 Tax=Lasius niger... [more]
A0A2Z6NSH0_TRISU9.930e-1547.62Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig108contigS-ischiensis_contig108:111089..111340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score68.9
Seed ortholog evalue1.2e-09
Seed eggNOG ortholog15368.BRADI4G12955.1
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs37V5Q@33090,3GFFK@35493,3IKJW@38820,3M7B5@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Exons1
Model size254
Cds size234
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815572.8998199-UTR-S-ischiensis_contig108:111088..1111061622815572.8998199-UTR-S-ischiensis_contig108:111088..111106Schizocladia ischiensis KU_0333UTRS-ischiensis_contig108 111089..111106 +
1695739778.4058583-UTR-S-ischiensis_contig108:111088..1111061695739778.4058583-UTR-S-ischiensis_contig108:111088..111106Schizocladia ischiensis KU_0333UTRS-ischiensis_contig108 111089..111106 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815572.9124436-CDS-S-ischiensis_contig108:111106..1113401622815572.9124436-CDS-S-ischiensis_contig108:111106..111340Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 111107..111340 +
1695739778.4182277-CDS-S-ischiensis_contig108:111106..1113401695739778.4182277-CDS-S-ischiensis_contig108:111106..111340Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 111107..111340 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig108.1919.1prot_S-ischiensis_contig108.1919.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig108 111107..111340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig108.1919.1

>prot_S-ischiensis_contig108.1919.1 ID=prot_S-ischiensis_contig108.1919.1|Name=mRNA_S-ischiensis_contig108.1919.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=78bp
MAAARRLRRYLKETLSLGIKIVGTAKPWSRPVLEGYCDADYGSDLSSRRS
TTGYVYYLAQGPIVWHSKMQTIVTQSST
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mRNA from alignment at S-ischiensis_contig108:111089..111340+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig108.1919.1 ID=mRNA_S-ischiensis_contig108.1919.1|Name=mRNA_S-ischiensis_contig108.1919.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=252bp|location=Sequence derived from alignment at S-ischiensis_contig108:111089..111340+ (Schizocladia ischiensis KU_0333)
AAACCATATGCCATACACATGGCTGCAGCCAGACGTCTACGTAGGTATTT GAAAGAAACCCTTTCCTTGGGTATCAAAATCGTAGGCACGGCCAAACCCT GGTCCAGACCAGTTCTAGAAGGGTATTGCGATGCAGACTATGGGTCGGAT CTGAGCTCTCGCAGGAGTACTACGGGCTACGTATACTACCTTGCTCAAGG ACCAATAGTTTGGCACTCCAAAATGCAGACCATAGTCACACAGTCTAGTA CA
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Coding sequence (CDS) from alignment at S-ischiensis_contig108:111089..111340+

>mRNA_S-ischiensis_contig108.1919.1 ID=mRNA_S-ischiensis_contig108.1919.1|Name=mRNA_S-ischiensis_contig108.1919.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=468bp|location=Sequence derived from alignment at S-ischiensis_contig108:111089..111340+ (Schizocladia ischiensis KU_0333)
ATGGCTGCAGCCAGACGTCTACGTAGGTATTTGAAAGAAACCCTTTCCTT
GGGTATCAAAATCGTAGGCACGGCCAAACCCTGGTCCAGACCAGTTCTAG
AAGGGTATTGCGATGCAGACTATGGGTCGGATCTGAGCTCTCGCAGGAGT
ACTACGGGCTACGTATACTACCTTGCTCAAGGACCAATAGTTTGGCACTC
CAAAATGCAGACCATAGTCACACAGTCTAGTACAATGGCTGCAGCCAGAC
GTCTACGTAGGTATTTGAAAGAAACCCTTTCCTTGGGTATCAAAATCGTA
GGCACGGCCAAACCCTGGTCCAGACCAGTTCTAGAAGGGTATTGCGATGC
AGACTATGGGTCGGATCTGAGCTCTCGCAGGAGTACTACGGGCTACGTAT
ACTACCTTGCTCAAGGACCAATAGTTTGGCACTCCAAAATGCAGACCATA
GTCACACAGTCTAGTACA
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