mRNA_S-ischiensis_contig108.1918.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig108.1918.1
Unique NamemRNA_S-ischiensis_contig108.1918.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig108.1918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig108contigS-ischiensis_contig108:109415..109963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size549
Cds size549
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815572.2818475-CDS-S-ischiensis_contig108:109414..1099631622815572.2818475-CDS-S-ischiensis_contig108:109414..109963Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 109415..109963 +
1695739777.9476378-CDS-S-ischiensis_contig108:109414..1099631695739777.9476378-CDS-S-ischiensis_contig108:109414..109963Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 109415..109963 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig108.1918.1prot_S-ischiensis_contig108.1918.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig108 109415..109963 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig108.1918.1

>prot_S-ischiensis_contig108.1918.1 ID=prot_S-ischiensis_contig108.1918.1|Name=mRNA_S-ischiensis_contig108.1918.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=183bp
IEPSLHGTPRTGSPTESACEQLPVSGGSEHPGINFPTAPGYQGATQGIVA
SPPLAEDHLGPAPPEGGQDVHENLGPALGDNSGSSEESEGESQGGDQPHH
GSNQQGDEQPVAVETAGSRWRNALRQLSSYNNSDAQDTPVVGTRRSHAAS
LLPPMNLGADPPPMPPWGLNRAQVYASLSHLHP
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mRNA from alignment at S-ischiensis_contig108:109415..109963+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig108.1918.1 ID=mRNA_S-ischiensis_contig108.1918.1|Name=mRNA_S-ischiensis_contig108.1918.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=549bp|location=Sequence derived from alignment at S-ischiensis_contig108:109415..109963+ (Schizocladia ischiensis KU_0333)
ATCGAACCATCGTTGCATGGAACCCCGAGAACAGGATCGCCCACGGAGTC
TGCTTGCGAGCAACTCCCCGTTTCAGGAGGGTCGGAGCACCCTGGGATCA
ACTTCCCCACGGCACCTGGTTACCAAGGGGCAACTCAAGGCATCGTTGCC
TCTCCTCCACTTGCTGAAGACCATCTAGGACCTGCTCCTCCAGAGGGTGG
ACAAGATGTACATGAAAACCTAGGACCAGCTCTGGGCGACAACTCTGGGA
GCTCCGAGGAGTCGGAGGGGGAATCCCAAGGCGGTGATCAGCCTCATCAT
GGTTCTAACCAGCAAGGTGATGAGCAGCCAGTAGCAGTAGAGACAGCAGG
GTCTCGTTGGCGGAACGCCCTGCGCCAATTGTCTAGCTACAATAATTCTG
ACGCCCAGGACACCCCAGTGGTAGGGACGAGAAGAAGTCATGCGGCTAGT
TTGCTTCCACCGATGAATTTGGGCGCAGACCCTCCCCCCATGCCTCCATG
GGGTCTGAATCGGGCACAAGTCTATGCAAGCCTCAGCCACTTGCACCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig108:109415..109963+

>mRNA_S-ischiensis_contig108.1918.1 ID=mRNA_S-ischiensis_contig108.1918.1|Name=mRNA_S-ischiensis_contig108.1918.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1098bp|location=Sequence derived from alignment at S-ischiensis_contig108:109415..109963+ (Schizocladia ischiensis KU_0333)
ATCGAACCATCGTTGCATGGAACCCCGAGAACAGGATCGCCCACGGAGTC
TGCTTGCGAGCAACTCCCCGTTTCAGGAGGGTCGGAGCACCCTGGGATCA
ACTTCCCCACGGCACCTGGTTACCAAGGGGCAACTCAAGGCATCGTTGCC
TCTCCTCCACTTGCTGAAGACCATCTAGGACCTGCTCCTCCAGAGGGTGG
ACAAGATGTACATGAAAACCTAGGACCAGCTCTGGGCGACAACTCTGGGA
GCTCCGAGGAGTCGGAGGGGGAATCCCAAGGCGGTGATCAGCCTCATCAT
GGTTCTAACCAGCAAGGTGATGAGCAGCCAGTAGCAGTAGAGACAGCAGG
GTCTCGTTGGCGGAACGCCCTGCGCCAATTGTCTAGCTACAATAATTCTG
ACGCCCAGGACACCCCAGTGGTAGGGACGAGAAGAAGTCATGCGGCTAGT
TTGCTTCCACCGATGAATTTGGGCGCAGACCCTCCCCCCATGCCTCCATG
GGGTCTGAATCGGGCACAAGTCTATGCAAGCCTCAGCCACTTGCACCCCA
TCGAACCATCGTTGCATGGAACCCCGAGAACAGGATCGCCCACGGAGTCT
GCTTGCGAGCAACTCCCCGTTTCAGGAGGGTCGGAGCACCCTGGGATCAA
CTTCCCCACGGCACCTGGTTACCAAGGGGCAACTCAAGGCATCGTTGCCT
CTCCTCCACTTGCTGAAGACCATCTAGGACCTGCTCCTCCAGAGGGTGGA
CAAGATGTACATGAAAACCTAGGACCAGCTCTGGGCGACAACTCTGGGAG
CTCCGAGGAGTCGGAGGGGGAATCCCAAGGCGGTGATCAGCCTCATCATG
GTTCTAACCAGCAAGGTGATGAGCAGCCAGTAGCAGTAGAGACAGCAGGG
TCTCGTTGGCGGAACGCCCTGCGCCAATTGTCTAGCTACAATAATTCTGA
CGCCCAGGACACCCCAGTGGTAGGGACGAGAAGAAGTCATGCGGCTAGTT
TGCTTCCACCGATGAATTTGGGCGCAGACCCTCCCCCCATGCCTCCATGG
GGTCTGAATCGGGCACAAGTCTATGCAAGCCTCAGCCACTTGCACCCC
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