mRNA_S-ischiensis_contig107.1906.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig107.1906.1
Unique NamemRNA_S-ischiensis_contig107.1906.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig107.1906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig107contigS-ischiensis_contig107:170379..175118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionPsbB mRNA maturation factor Mbb1, chloroplast precursor
Ec32 orthologEc-07_001100.1
Hectar predicted targeting categoryother localisation
Exons5
Model size519
Cds size519
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig107.1906.1prot_S-ischiensis_contig107.1906.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig107 170379..175118 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.9110286-CDS-S-ischiensis_contig107:170378..1704021622815569.9110286-CDS-S-ischiensis_contig107:170378..170402Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 170379..170402 +
1695739776.441977-CDS-S-ischiensis_contig107:170378..1704021695739776.441977-CDS-S-ischiensis_contig107:170378..170402Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 170379..170402 +
1622815569.9294815-CDS-S-ischiensis_contig107:172069..1721411622815569.9294815-CDS-S-ischiensis_contig107:172069..172141Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 172070..172141 +
1695739776.4510193-CDS-S-ischiensis_contig107:172069..1721411695739776.4510193-CDS-S-ischiensis_contig107:172069..172141Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 172070..172141 +
1622815569.9417074-CDS-S-ischiensis_contig107:172337..1724751622815569.9417074-CDS-S-ischiensis_contig107:172337..172475Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 172338..172475 +
1695739776.458966-CDS-S-ischiensis_contig107:172337..1724751695739776.458966-CDS-S-ischiensis_contig107:172337..172475Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 172338..172475 +
1622815569.9532242-CDS-S-ischiensis_contig107:174026..1741131622815569.9532242-CDS-S-ischiensis_contig107:174026..174113Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 174027..174113 +
1695739776.4670758-CDS-S-ischiensis_contig107:174026..1741131695739776.4670758-CDS-S-ischiensis_contig107:174026..174113Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 174027..174113 +
1622815569.96567-CDS-S-ischiensis_contig107:174920..1751181622815569.96567-CDS-S-ischiensis_contig107:174920..175118Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 174921..175118 +
1695739776.4750903-CDS-S-ischiensis_contig107:174920..1751181695739776.4750903-CDS-S-ischiensis_contig107:174920..175118Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 174921..175118 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig107.1906.1

>prot_S-ischiensis_contig107.1906.1 ID=prot_S-ischiensis_contig107.1906.1|Name=mRNA_S-ischiensis_contig107.1906.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=173bp
AWAKVEDQLAGDYARAKQLLDEALADDSTDVKVHVARAALEMRRGNAARA
REILSDAADLPQKEAQLFNMWATLETREGNLQTALQILRAASARFPLDQT
LLQTQGTVQARLGNHKAAIDCYRKSIEIRPAAPAFVAWALLEGAQAAAAG
AGAKQGGGGGGAGAAVVPGEEGE
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mRNA from alignment at S-ischiensis_contig107:170379..175118+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig107.1906.1 ID=mRNA_S-ischiensis_contig107.1906.1|Name=mRNA_S-ischiensis_contig107.1906.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4740bp|location=Sequence derived from alignment at S-ischiensis_contig107:170379..175118+ (Schizocladia ischiensis KU_0333)
GCTTGGGCCAAGGTGGAGGACCAGGTGAGCGACAGGACTATATATATACT
TCCTCCAGCCCGTATTATTATACCTACTTTTTAACGGACTCAGACTCGGC
GCTATAGTGCCGAACGGTATACAAACCCATATATCGGCGTGAAGCCTCTC
TCTTGAACTCCCCATCGCGCCAAACAGCGCGTCAAACGGAGGTCGGTAGC
TCGAGCTAGGTGGCCTCGAAGCCGGGGGAGCGAGAAAAGGGGCTCAGACC
CCCCCCCCCTGTTCGGACGTGAAACGACTTTTCGGCGTGCGCGCAGAGAT
GCGAGAGGGTCGAGCGCAACGAGCGATTTTGCGAGGCAGGTCCATGCCAG
GGTCGTAGGATGGGCAACACAAGGGACATACCCCCCGAGGTGCGGGCTAC
GACCGCCGTGTGCGCCTTTGAGGCTTCCGGGGGCCGCGCGAAGGGGACAA
CATGGCTCTGTTCCGATACCGCTGGAGCGGGTCGGGGTCAGCGAGAACGT
CGCCAAGCGCTCATGACGCAACACGGGGGTCGTCCGCTTCTCGGCTTGTC
CGCCGGGGTGCGTGAGCCGTAATGGGCCCCGTCGGCAGGGCCTCGAGGCG
CCATAGGCAAAGAGATTTGGGCGCATCCCAGCAAAAATGCCCGTTCCGGC
TCAGGTGGGCCGGTGCCAAAATAGGCCAAAAAACGGGCAAGAAAGACCCT
GATCAAGTGGAGGAAGGGCTTGGGCTAGTGTGGGGCCATTGTCAAGCAAT
CTCTATGGATATCCCCCCACAGAAATTACACCACACGGCACAATGACAAG
AAAATGCCCCTCAGAGGCCCCAAACGGGCACCCGGAATGTGTGATTTGGA
GGCGTTGCTGCAGCAGGGCTAGTCCCAGCTGTAGGGCTCCACTTGCTTTG
AGATGTTAGCCGCAGACACTTTAAGACCTAATAAAAACACAGACAAAACA
GGAAATCTCAAGTTTATTTTTCATGAGCCTAAGGTGGTCTCCAAAAACTA
GGTCTATGAATAGTATGGGCTGGAGGAAGTATATATATATGAGTACTTCC
AAGTAATACGCAGTGTATATATATGTGTGGTTTTTGAGTATGCGATGCAA
GTATGCATGGCACAGATATGTGTTATGTACTGTGCTGTAGGGGGTGGGGG
ATGTGGGGACATCGGCCTGGCTTGGGCCAAGGTGCAGGACCAGGTGAGCG
ACATGGCTACTGTTCAGTCTACTATACAGTTGTGTTTCAAAGTGCGCCAT
GCACTTGTGTACGGTACAGGTTTGTGTTTTGTGTGTGCTGTGCTGTCGAG
TGAAGTGCTGGTGGACTTGCAATAGTACGAGTAGAGCAGTGGCATGTATG
TAGTCAGCGGCATGCACAGGACGAGCCGTTCATCCGGCATGAGTACCGTA
CCTACGAGTACACGTACAACTGTAGTCTACAGCACTAGTACAACAGTATC
CACCTCGCCCTCCCTGCCTTCCTGCATATGTCCCCCCTCCCATTCTGTCT
CTATCTCTCTCTGTCTGTCTCTCTCTCTCTCCCTCTCCCTCTCCCTCTCC
CTCCCCTCCCTCCCTCTCTCTCTCCCTCTCTCCCTCTCCCTCTCTCCCTC
TCTCTCTCTCGCTCTCTCTCTCTCTCTCGCTCTCTCTGCGGCGTGTCTGC
TTACGTGTGCCTGTCCTTGTGTGTGTGCTTGCGCCCTGCAGTTGGCCGGG
GATTACGCCAGAGCCAAGCAACTGCTGGATGAGGCCCTTGCTGACGACTC
CACCGATGTCAAGGTGGGTGACTGCAATGATGGAATATCTAAGAAAATCT
ATTTATCGACAGTACTGATCTATACTCATACATCCATAGATACTCGATAT
TTGATAGTTGACCCACACTACATCCAAGTAGTTAGTGACGCCACCAACAA
AATCAGTCGAGCCTGATAACTATCTACTGATTATCGATATATTCCATCAC
TGCTGCCAGGTGCATGTGGCAAGGGCGGCGCTGGAGATGCGCAGGGGGAA
CGCTGCTCGGGCTCGGGAGATCCTGAGCGACGCGGCGGATCTACCGCAGA
AGGAGGCGCAGCTCTTCAACATGTGGGCCACGCTAGAGACCCGGGAGGTG
TGTGTGTGTGTGCAACTGGTGTGATGTGATGCCAAACTACAGTGTTTTTG
TGTGCACATCACATCGCCTCAGATCACATCAATTTCTTTGTGACGTGTAG
TATGTGTGTGTGTGCGGGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGCC
TGTGTGCAACTTGGGTGATGTGATGTGATGATGCGAAGGGTAGCAGCTGT
TCAACATGTGGGCCACGCACGAGACCCTGAAGGTGTGTGTGTGATGTGAT
GTGCACACAAAAGTACTGTAGTTCCACATCACATCACATCACAACAAATC
ATCGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATGTGATGCGAAG
TGTAGCAGCTGTTCAACATGTGGGCCACACTCGAGACCCGGGAGGGGTGT
GTGTGTGTGTGCGGGTGTGTGCGTGTGTCTGTGTGTGTGTGGGTGTGTGG
GTGTGCCTGTGTGCAACTTAGGCTATGCGATGTGATGTGATGCAAAGTGT
AGCAGGTGTTAAACATGTGGGCCACGCTCGACACCCGGGAGGGGTGTGTG
TGTTTGTGATGTGATGTGCACACAAAAGCACTGAACTTTCACATCACATC
CAATCACAACAAATCATCGTGTTTGTGTGTGTGTGTGTGTACGCGCGCGT
GTTTGTGTGTGTGCGGGTGTGTGCATATGTGTGAGTGTGTGTGTGTACGC
GTGTGTGTGCAACTTAGGTGATGATGTGATGTGATGCGAAGGGTACACAA
CAGTACTGTAGTTTGGCATCAAATCACGTCACATCACATCGCTTTTCTCG
CGACGCGTAGGTATGTACGTGTGTGTGTGTGTGTGTGCAACCTAGGTGAT
GTGATGTGATGTGATGCGAAGTGTACAAAAAAGTGCTGTATAAACAGGAA
CAACGCAGGGCGAGGTGCACGCCACGTCACTGAAGACATCAGCAGTGGGG
TTTCCTTAGGTGCTGTAGCTTGGCATCAAATCATGCCACATCGTATCGCT
TTTTTCGCGACACGTAGGTGTGTACATGTGTGTGTGTGTACAAGATTATG
TGATGTGACGTGATGTGTACTCAAAAAGGTATTGTACAAGTACACAAAAC
CTTCCCTGGGGAGCTAGGCAAGGCGTTTACCACTGTTAAGGGCTTTGTGA
CGCGGCCCACACCTGCAATAGCCCCGCGTTTTTCCTGTCAGTACCGCATG
TACCTGGTTTGGCATCAGATGACATCGCATCACATCGCTTTTGCTGGCGA
CGTGTGGGTACAGTACAATTGCATGTGCTGCAGTCGCCGCCGAAATTTCC
CCCGGGTGTGCCATGTCAGATGTGAGACGACACACCAAACAGCAAGTCCC
TGCATTCGGCAGCGCCAGCCCACCCACGCACGGGTTGGCACCTACTGTAG
AGGTTCATTGAGGCCTAGTTAGCCTCCATTTTAGGTCTAACTACCCCTAC
AGTAATTGCCTCTAACTAAGGGCCTAGTTCAGCCCTAGCTAACCTCTAAG
TGCCAACCCTGCCCGCCCACCCACGCACGCCTTCCTTGCCCCCAACAGGG
CAACCTGCAGACGGCTCTCCAGATCCTGCGTGCGGCGTCGGCGCGCTTCC
CGCTGGACCAGACGCTCCTGCAAACTCAGGGGACGGTGAGATATAGCATT
TACTAGATGAGATCAGTGATGGAATATCTCAGCAAATCAACCTATTTATC
GACAGTGCTGATATACTTCGAAGTATGTATCTATCAATCGTTGATATTCG
ATAGTTTGACCCAGACCAAATCCAAGTAGTTTGTAACGCCACCCGCAACA
TCCTTCGAGCCCGATAAATATCTACTGGTCGATATTGCGTCACTGGGTGA
GACAACCCTGACCAGATGAGATTTGTAGGGCTGACATGACAGCTCGCTTT
GAGAGCTGCAAACTCACGGGACGGTGAGACGGCATTGACCAGATGAGATC
ATTAGGGCTGACAGCTCGCTTTGAGAGCTTGTTGTGGCCAGGAGAAGGGG
CAAGCGAGTGGAAAAAGGGGTCGGAGTTGTGTATTGGCAGGGAGTGTCAA
TGTACATAGTATTACGTACATAGTGTATATATATATATATATGTATTGCT
ATCAGCCTGGCGACCGATTGGGGCTATTCGGTTGTAACTCGGTTTTACCG
ACTATCAAGGCGACCGAGCGGTCGGTATTTGTTGGCGTTTTCCTGAGTAC
GTTGCCGTTTACCGGCTGTGTGACGAGCCCCGGCCGTGGATACCGGCTAG
CCTCGCCTGCGATGGCTCTTCTCACGTCAAAAATATGCTTCACCGCCGGT
GACCACCACCACCACCACCACCACCGCACAACCACCACCACCGCCACCAC
CACCACCACCACCACCACCATCACCACTGCACCACTACCACTGCCGCCGC
CGCCGCCACCGCCATCACCACCCTGCCCCCCCCCCCTTGCAGGTGCAAGC
CCGCCTGGGCAACCATAAAGCTGCCATCGACTGCTACCGGAAGAGCATTG
AGATCCGCCCCGCGGCGCCCGCTTTCGTGGCGTGGGCGCTCCTGGAGGGC
GCGCAGGCGGCAGCAGCGGGGGCGGGCGCGAAGCAGGGCGGCGGCGGCGG
CGGTGCCGGCGCTGCTGTCGTTCCTGGGGAGGAAGGGGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig107:170379..175118+

>mRNA_S-ischiensis_contig107.1906.1 ID=mRNA_S-ischiensis_contig107.1906.1|Name=mRNA_S-ischiensis_contig107.1906.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1038bp|location=Sequence derived from alignment at S-ischiensis_contig107:170379..175118+ (Schizocladia ischiensis KU_0333)
GCTTGGGCCAAGGTGGAGGACCAGGCTTGGGCCAAGGTGGAGGACCAGTT
GGCCGGGGATTACGCCAGAGCCAAGCAACTGCTGGATGAGGCCCTTGCTG
ACGACTCCACCGATGTCAAGTTGGCCGGGGATTACGCCAGAGCCAAGCAA
CTGCTGGATGAGGCCCTTGCTGACGACTCCACCGATGTCAAGGTGCATGT
GGCAAGGGCGGCGCTGGAGATGCGCAGGGGGAACGCTGCTCGGGCTCGGG
AGATCCTGAGCGACGCGGCGGATCTACCGCAGAAGGAGGCGCAGCTCTTC
AACATGTGGGCCACGCTAGAGACCCGGGAGGTGCATGTGGCAAGGGCGGC
GCTGGAGATGCGCAGGGGGAACGCTGCTCGGGCTCGGGAGATCCTGAGCG
ACGCGGCGGATCTACCGCAGAAGGAGGCGCAGCTCTTCAACATGTGGGCC
ACGCTAGAGACCCGGGAGGGCAACCTGCAGACGGCTCTCCAGATCCTGCG
TGCGGCGTCGGCGCGCTTCCCGCTGGACCAGACGCTCCTGCAAACTCAGG
GGACGGGCAACCTGCAGACGGCTCTCCAGATCCTGCGTGCGGCGTCGGCG
CGCTTCCCGCTGGACCAGACGCTCCTGCAAACTCAGGGGACGGTGCAAGC
CCGCCTGGGCAACCATAAAGCTGCCATCGACTGCTACCGGAAGAGCATTG
AGATCCGCCCCGCGGCGCCCGCTTTCGTGGCGTGGGCGCTCCTGGAGGGC
GCGCAGGCGGCAGCAGCGGGGGCGGGCGCGAAGCAGGGCGGCGGCGGCGG
CGGTGCCGGCGCTGCTGTCGTTCCTGGGGAGGAAGGGGAGGTGCAAGCCC
GCCTGGGCAACCATAAAGCTGCCATCGACTGCTACCGGAAGAGCATTGAG
ATCCGCCCCGCGGCGCCCGCTTTCGTGGCGTGGGCGCTCCTGGAGGGCGC
GCAGGCGGCAGCAGCGGGGGCGGGCGCGAAGCAGGGCGGCGGCGGCGGCG
GTGCCGGCGCTGCTGTCGTTCCTGGGGAGGAAGGGGAG
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