mRNA_S-ischiensis_contig107.1890.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig107.1890.1
Unique NamemRNA_S-ischiensis_contig107.1890.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig107.1890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig107contigS-ischiensis_contig107:10964..16289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1138
Cds size1125
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.6501458-CDS-S-ischiensis_contig107:10963..113231622815569.6501458-CDS-S-ischiensis_contig107:10963..11323Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 10964..11323 -
1695739776.2903636-CDS-S-ischiensis_contig107:10963..113231695739776.2903636-CDS-S-ischiensis_contig107:10963..11323Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 10964..11323 -
1622815569.6617708-CDS-S-ischiensis_contig107:12125..122421622815569.6617708-CDS-S-ischiensis_contig107:12125..12242Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 12126..12242 -
1695739776.303518-CDS-S-ischiensis_contig107:12125..122421695739776.303518-CDS-S-ischiensis_contig107:12125..12242Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 12126..12242 -
1622815569.6729515-CDS-S-ischiensis_contig107:13205..133821622815569.6729515-CDS-S-ischiensis_contig107:13205..13382Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 13206..13382 -
1695739776.313859-CDS-S-ischiensis_contig107:13205..133821695739776.313859-CDS-S-ischiensis_contig107:13205..13382Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 13206..13382 -
1622815569.6844072-CDS-S-ischiensis_contig107:14219..144231622815569.6844072-CDS-S-ischiensis_contig107:14219..14423Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 14220..14423 -
1695739776.3235793-CDS-S-ischiensis_contig107:14219..144231695739776.3235793-CDS-S-ischiensis_contig107:14219..14423Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 14220..14423 -
1622815569.695167-CDS-S-ischiensis_contig107:15308..154611622815569.695167-CDS-S-ischiensis_contig107:15308..15461Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 15309..15461 -
1695739776.3318624-CDS-S-ischiensis_contig107:15308..154611695739776.3318624-CDS-S-ischiensis_contig107:15308..15461Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 15309..15461 -
1622815569.7054722-CDS-S-ischiensis_contig107:16164..162781622815569.7054722-CDS-S-ischiensis_contig107:16164..16278Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 16165..16278 -
1695739776.341274-CDS-S-ischiensis_contig107:16164..162781695739776.341274-CDS-S-ischiensis_contig107:16164..16278Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 16165..16278 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.7180138-UTR-S-ischiensis_contig107:16278..162891622815569.7180138-UTR-S-ischiensis_contig107:16278..16289Schizocladia ischiensis KU_0333UTRS-ischiensis_contig107 16279..16289 -
1695739776.3507164-UTR-S-ischiensis_contig107:16278..162891695739776.3507164-UTR-S-ischiensis_contig107:16278..16289Schizocladia ischiensis KU_0333UTRS-ischiensis_contig107 16279..16289 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig107.1890.1prot_S-ischiensis_contig107.1890.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig107 10964..16278 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig107.1890.1

>prot_S-ischiensis_contig107.1890.1 ID=prot_S-ischiensis_contig107.1890.1|Name=mRNA_S-ischiensis_contig107.1890.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=375bp
MDVRSDLFSLSDDSTDGTMAELAGQRYLRSPLVVDTDEEESDVGYSGPDG
GLGGLKEANLKLNDSHDSQGATIDGLLQRLRNAGGAYDQVSSKAPRGGVT
EPPVHAHHGNSKYDMAGRKGHGLFEAGAGLKEEALVEGRVLGAEGLGSLT
PAKVLLKVSFVEGAVEGAHSGGDQGRARHTSTLFQCKSLVHATGAVVVAS
DGMADWEKAGRSFAFEVFHGGGQQGYDSVVEGQVLLALYKRHTDNDGGWD
RFVGQAVVPLALPFAQLRRVQHTASEGPALQGTVNGTFPLLGRGGDNRRG
SSSSGCNGASPGNAAGAAAIGTAMGVSVSLCLTLPLVSPERAAGRVVDIG
KAAAPGWAATGSGAGAAAWEMDGKE
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mRNA from alignment at S-ischiensis_contig107:10964..16289-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig107.1890.1 ID=mRNA_S-ischiensis_contig107.1890.1|Name=mRNA_S-ischiensis_contig107.1890.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5326bp|location=Sequence derived from alignment at S-ischiensis_contig107:10964..16289- (Schizocladia ischiensis KU_0333)
CCAAGAAGCCCATGGATGTCAGATCGGACCTGTTTTCGCTGTCAGATGAC
AGCACAGATGGGACCATGGCAGAGCTGGCTGGGCAGCGGTACCTCAGGAG
CCCTCTTGTGGTGGACACTGACGAGGTGAGTACTTCAAGTACAACACTTT
GGTGAATAGCGCTGGGGGTGTAATGCATGTGGCGAGCTACTTCCTTTCGA
GTCAGATGTTGTCGGCTAATGTGCATACAATACAAACCATCCCTACTGCA
AACTACGGAAGTACTGCAGTGCACGGTGTAGCTGGGTAAGACGTCATCCT
CCAAGGATCACATTGTGTTTCATTAAGCAGAGGGGAGCCGTGGGGAGCAG
GATACACTGCAGTAGTATTGCAAAATGTTCAAATTGCAGTACAAGTACTC
GTAGAGCTCTACTCTACTACTTCGAAGTGCACAACTTTCCCCGGGCGAGC
TAAAAGGAAGGGCCACTGTTGAGGTCTTTCGTGATGTGGCTCGCACCTCG
CCCTGTGTTTCTCCTGTTCATACTACTACTGCTGCTCTAGCAGTACCTGC
ACGTTTCAGAAACAACTACAGTACGTTGAGCAACACCCTAACCCCCTGAG
AGACCCCACCACTTCCCGAGCATGGAGTGCCAATGTCCTATTGACCCCTC
CAGCGGCAAAATGATCCCCGAGCAATCCCACATCAATCAGTGTTGAACAC
TTATGCTAGTGGAAGGAAGGACTTCCGGGAATGGGGCCCTGAACTCGCGT
TAGTAGGGACACCTCCTCTTTCCCACTCGCATATTTATCTTCTTCCAAAA
AACACTCATGCACATCCATATTGTGCAGGAGGAAAGCGATGTGGGGTACT
CTGGGCCAGATGGCGGGCTGGGCGGGTTGAAGGAAGCAAATCTCAAGCTG
AATGACAGCCATGACTCCCAAGGGGCCACCATCGACGGCCTGTTGCAGCG
CCTCAGAAATGCCGGGGGGGCATATGACCAGGTGCGGGAGACAATTATGA
GGGCTTGCCTTTACTGTTATGAAGGTAGAGCCCTTCCGCATGCAAATTTG
ACAGCACTGTGACACTATTCGGCAGACAACACGGCGGCGATGTTGTTGGG
ATTTCGCATACTGCGAGAGCTGTTTTGTGTACGAAGCGACTATTGTAGAT
GTATGGCATGCGCAAAGAGTAGGCGTGCCAAACAAAGCAGAACATGATAC
GGCAGCATGCAGTTGAACTCGTACTTGGTCAATTGCTTTTTTTCTCGGGA
CTACGGCAAGCATCACGTGAGTACATACTACATATATTTGGTATCTGACA
CTTGTTGTGGCATTCGAGTGCCAGGCATGCTAGGCCCACCCTCACGCTAA
GTACATGTGCCCTTGGTCACACACACACTGTCAACTGTGGTACTTCCAAG
CACAGTACTGGGTGGGAGGCATTTGCCGCACACATTGGGTGAACGTGTAG
CAGTCTAGTATTACACCATTGTCACTCAGACAACAACACTCGATGCTATT
TACTGAGAGAACTTCACTCATATTTTGAAGTATTTCAAGAGCCAAGATCA
GGAGCAGCCTATGACCTGCATGGAGTCGGGGCTGTGCAATAAGCTGCCTT
CTGACAGATACACAGTACTGTCAGCATTCTACAACCTTGGCGGCCTCAGG
CTGCACCAAGCAACGCACCGGACCCTAGCCCGACCTGTGAAGTTATGCAA
CGTACAACCGCGCAGAAGGATGGGAGTTCATTTTGGAACGAATGCGCTAC
TTCTTTCTGGAGGCATGTGGTCAATGGTTTCGGGACTACGGCAAGCACAA
CGTGAATACATAGATAGTGCATATATAATGCGGTACCATTCCTCTGGGGT
GATTGAAACTCGGCAGGTGTCAAGCAAAGCCCCAAGGGGGGGTGTCACAG
AACCCCCGGTTCACGCCCACCACGGTAACAGCAAATACGATATGGCGGGA
CGGAAAGGCCATGGTCTGTTTGAGGCTGGAGCAGGCTTGAAGGAGGAGGC
GCTGGTGGAGGGGAGAGTGCTGGGGGCAGAAGGGCTGGGGTCACTGACGC
CCGCCAAGGTGCTGCTCAAGGTTAGTCAGTGTATCATGTGACTGATGTGT
ACTTCGTAAGTACGTCTGAACGGTGTATCCTACTGCACTTTGGCATCACC
TCATGTAACTGCATTGACAGAATTGTGTGCACGTATCTGCGTGCATGTGT
GTGCACACGTGTGCAAGTGATTGACCCTAAGTGTGTTGGAAGTGAGTGCG
CGCACGTGTGCCTATGCATGTGCGTGCGTGTGTGCGTTGCGTGAGTAGCA
CCCGCAGTGCGCACCGCCCATACCAACAAGCAGCGTACCAGTGTTCCACA
GTGATATGTAGATTGAGCTATTCTTGTTATGGCCGTATGCCAGCCGCCCT
TCAGTAGTACAGTAAGCCCAGCCCGCCAGGCGAGCTTTGTCAAGGATGTT
GGCAGCAATGGGTGTACAGTAGAGCTCTAGAGGCTAAAGACATGCCAGAC
CGCAAGACCAGTTCAAGATCGTATGTATTTAAACGCCATGATGGCCCTAG
TCTCAATCTCTAGCTGTAAACCTGTACGCCTAACCAGGCGAGCTTTGTCA
AGGACGTGGGCAGCGATGGGTAACCACTACTACGAGAACACTCAATCTCA
CACACGTGCGATTGTACCTTGTTGCGATTTACTTCGAAGCACATGAAACG
CGGCAGCAATGGGGGTACAGTAGAGGCGAAAGCCATGCCAGACCGCAAGA
CCAGTTCAAGATCATACGTATCTAACCATCACGATGGCCTTAGTCTTAAC
CTTTTTTGCCCCTGGAGTCCGCATAATCATAGGGTCTTAATGTGTAAGTC
CAATGTAGCAGGGGCAAAAGGGTTAACCTCTAACCGTACACCTATGTACC
TGACCAGGTGAGCTTTGTGGAGGGTGCGGTTGAGGGCGCTCACAGTGGTG
GCGACCAGGGCCGCGCCAGACACACCAGCACGCTATTCCAGTGCAAGAGC
CTGGTGCATGCCACAGGAGCCGTGGTCGTGGCTTCCGATGGCATGGCCGA
CTGGGAAAAGGCGGGGCGATCTTTCGCCTTTGAGGCAAGTTTTGTACAAG
TAGCTGTTGTGTTTGAGGCAAGCTTTGTACTTCGTACAAGTAGTTATTGT
CGGATGGGCCTCGCACCCCAACCTCTGTTTTGAGTCGACATTCTTCCAGA
GTACTTGTATGTACTGCAGTGCGTGCAGTTTTTGGGAAAAATCCTCCAAG
CAGTTTGTATCAAGTACAATAGAGTACCATTGGGGGAATGAATATTGCCG
ATCGATTTTAAATGGACGAGCGTCGTTGGCCGCGAAACGAAATGACTTTG
CGGCGGCCAGACCAAGGGTAGCCGCAGAGAAAGTCCCAGCCACGCCGGTA
GCGCCAGCGACTGTGATTGTGTCTGCAATCACATGCTTGGCCATCTATAA
CGCCCATGCATAGCAAGGCAGTGCAGTGTGTACCTGCACGTCGTTGCCAT
CACCCGCTAACCCTTCCTTTGCTTCCTGTCTTCAGCACCGGCCGTACAGT
ACAGTGGCAGCATCCCGATGGCCCTTTGACCTTCCTCACGACATACCTAC
CTGCCCCGCTAGTTGAGCCGATTGCATCATCTGCGAATGAAAACCGTTTT
TGGGCAGTTGCAATGCGCGCCCGTGGGGATTGTTGGCGTTAGGCCTTGGG
CCCAGGGCTCAAACTTTGGCTCAAATTTTTGTTGCAGTGGCACCCGCGGA
CATTTTTGACTTTAGGCCCAGGGCTCAAAGCCTACTGCTATGACGGAGGG
CCCTTACCAATGGCCATCCGCACAACTGCTTCACCGACAGAAACACTTGA
TGAGTAGCAATACATCCGTTCCAGATACTACTCGTACATACTTTGGGTAA
ACATTGACATGTGCATGTCACGAGTAATTTGTGGAGTGTGTTGCTTGAGA
GACAGCGCTAGTGACTCACGTATCTATTTGTACACAGCACTATGGATGCC
ACAGCCGTAACCTGACCATGCGACGCCCAAATGCCCCCTTTGCCCAGGTA
TTTCATGGGGGGGGGCAACAGGGCTACGACAGTGTGGTCGAGGGGCAAGT
CCTCTTGGCATTGTACAAGCGCCACACAGACAATGACGGTGGCTGGGACC
GCTTTGTGGGGCAGGTGAGGTCTCTCGCAAGATTGCGGGGCACTGCAGTA
CATGAATGTTTCCCCGTCTGCAGCAGTTGGTGAGCATGTACTACGCGAAG
CACTGTATTGTACAGTTGAGGTATTATTTTGACATGGCCTGCACGTCGCC
CTGTGTTGTTCCTGTTAGTGCTGTACTCGTACTGTACAGTCGTCGTGCTG
TGTCATCACCTCATCTGAGATTAGTTGGAGTACAGTACCTCTGAGTGCTG
CCCTTGTCTCGGCTGCTCCAGACATTGCTCCAGCTGGTGGTTGAGGGTCA
CCAGAACATAAACCAAGCTGAAATCCGGTCTTGCATACCATACCCTATGA
ACCGACCGTCCTGTGGCAAGCGGTACTGTACAGTACAGTACAGTAGTAGT
GTACCGCACCACGCCCAGCGGGCTTCCCGTACTGTAATAATTGGCGGGGT
TGGCACCTAGAGGTCAATTAGGGCCGTATTAGCCTTCATTTGAGGTCTAA
TTACCCCTAATTAGCCCTAATTAAGGGCCTAAAAGGACACCACTCAGCGT
TAAGTGCCAACCCTGATAATAAGGCCTGCATTACCCTGATGACCCAGTAG
CCGGGCACCATTTGTTGTCCTTCCCATGACCCTAGCCCCATTTAGGGTTA
GGGTTAGGGCTAGGTTAGGGTTAGCAGGCATGGTTGGCACATAGCCCCCA
CAGTAAGTGGCGCCCTTTTGGGCCCTTAAATAGAGGTGATTAGGGGTAGA
GTAATCATCCAAACATGAAGGCTGAGTAGGCCCTACTCAACCTCCAAGTG
CCAACCCTGTCTGCAGGCGGTCGTGCCGCTGGCCCTGCCCTTTGCACAGC
TGCGCCGCGTCCAGCACACTGCTTCAGAGGGCCCTGCCCTGCAAGGCACC
GTGAACGGAACATTCCCGCTCCTGGGCCGAGGCGGGGACAACCGCCGCGG
CAGCAGCAGCAGCGGCTGCAACGGGGCCAGTCCGGGCAATGCGGCGGGGG
CAGCGGCGATCGGCACGGCCATGGGAGTGAGCGTGTCCCTCTGCCTCACC
CTCCCTCTTGTATCCCCTGAGAGGGCCGCTGGGAGAGTTGTCGACATTGG
GAAGGCGGCCGCTCCGGGTTGGGCGGCAACCGGGAGCGGGGCTGGGGCAG
CGGCGTGGGAGATGGACGGAAAAGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig107:10964..16289-

>mRNA_S-ischiensis_contig107.1890.1 ID=mRNA_S-ischiensis_contig107.1890.1|Name=mRNA_S-ischiensis_contig107.1890.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2250bp|location=Sequence derived from alignment at S-ischiensis_contig107:10964..16289- (Schizocladia ischiensis KU_0333)
ATGGATGTCAGATCGGACCTGTTTTCGCTGTCAGATGACAGCACAGATGG
GACCATGGCAGAGCTGGCTGGGCAGCGGTACCTCAGGAGCCCTCTTGTGG
TGGACACTGACGAGATGGATGTCAGATCGGACCTGTTTTCGCTGTCAGAT
GACAGCACAGATGGGACCATGGCAGAGCTGGCTGGGCAGCGGTACCTCAG
GAGCCCTCTTGTGGTGGACACTGACGAGGAGGAAAGCGATGTGGGGTACT
CTGGGCCAGATGGCGGGCTGGGCGGGTTGAAGGAAGCAAATCTCAAGCTG
AATGACAGCCATGACTCCCAAGGGGCCACCATCGACGGCCTGTTGCAGCG
CCTCAGAAATGCCGGGGGGGCATATGACCAGGAGGAAAGCGATGTGGGGT
ACTCTGGGCCAGATGGCGGGCTGGGCGGGTTGAAGGAAGCAAATCTCAAG
CTGAATGACAGCCATGACTCCCAAGGGGCCACCATCGACGGCCTGTTGCA
GCGCCTCAGAAATGCCGGGGGGGCATATGACCAGGTGTCAAGCAAAGCCC
CAAGGGGGGGTGTCACAGAACCCCCGGTTCACGCCCACCACGGTAACAGC
AAATACGATATGGCGGGACGGAAAGGCCATGGTCTGTTTGAGGCTGGAGC
AGGCTTGAAGGAGGAGGCGCTGGTGGAGGGGAGAGTGCTGGGGGCAGAAG
GGCTGGGGTCACTGACGCCCGCCAAGGTGCTGCTCAAGGTGTCAAGCAAA
GCCCCAAGGGGGGGTGTCACAGAACCCCCGGTTCACGCCCACCACGGTAA
CAGCAAATACGATATGGCGGGACGGAAAGGCCATGGTCTGTTTGAGGCTG
GAGCAGGCTTGAAGGAGGAGGCGCTGGTGGAGGGGAGAGTGCTGGGGGCA
GAAGGGCTGGGGTCACTGACGCCCGCCAAGGTGCTGCTCAAGGTGAGCTT
TGTGGAGGGTGCGGTTGAGGGCGCTCACAGTGGTGGCGACCAGGGCCGCG
CCAGACACACCAGCACGCTATTCCAGTGCAAGAGCCTGGTGCATGCCACA
GGAGCCGTGGTCGTGGCTTCCGATGGCATGGCCGACTGGGAAAAGGCGGG
GCGATCTTTCGCCTTTGAGGTGAGCTTTGTGGAGGGTGCGGTTGAGGGCG
CTCACAGTGGTGGCGACCAGGGCCGCGCCAGACACACCAGCACGCTATTC
CAGTGCAAGAGCCTGGTGCATGCCACAGGAGCCGTGGTCGTGGCTTCCGA
TGGCATGGCCGACTGGGAAAAGGCGGGGCGATCTTTCGCCTTTGAGGTAT
TTCATGGGGGGGGGCAACAGGGCTACGACAGTGTGGTCGAGGGGCAAGTC
CTCTTGGCATTGTACAAGCGCCACACAGACAATGACGGTGGCTGGGACCG
CTTTGTGGGGCAGGTATTTCATGGGGGGGGGCAACAGGGCTACGACAGTG
TGGTCGAGGGGCAAGTCCTCTTGGCATTGTACAAGCGCCACACAGACAAT
GACGGTGGCTGGGACCGCTTTGTGGGGCAGGCGGTCGTGCCGCTGGCCCT
GCCCTTTGCACAGCTGCGCCGCGTCCAGCACACTGCTTCAGAGGGCCCTG
CCCTGCAAGGCACCGTGAACGGAACATTCCCGCTCCTGGGCCGAGGCGGG
GACAACCGCCGCGGCAGCAGCAGCAGCGGCTGCAACGGGGCCAGTCCGGG
CAATGCGGCGGGGGCAGCGGCGATCGGCACGGCCATGGGAGTGAGCGTGT
CCCTCTGCCTCACCCTCCCTCTTGTATCCCCTGAGAGGGCCGCTGGGAGA
GTTGTCGACATTGGGAAGGCGGCCGCTCCGGGTTGGGCGGCAACCGGGAG
CGGGGCTGGGGCAGCGGCGTGGGAGATGGACGGAAAAGAGGCGGTCGTGC
CGCTGGCCCTGCCCTTTGCACAGCTGCGCCGCGTCCAGCACACTGCTTCA
GAGGGCCCTGCCCTGCAAGGCACCGTGAACGGAACATTCCCGCTCCTGGG
CCGAGGCGGGGACAACCGCCGCGGCAGCAGCAGCAGCGGCTGCAACGGGG
CCAGTCCGGGCAATGCGGCGGGGGCAGCGGCGATCGGCACGGCCATGGGA
GTGAGCGTGTCCCTCTGCCTCACCCTCCCTCTTGTATCCCCTGAGAGGGC
CGCTGGGAGAGTTGTCGACATTGGGAAGGCGGCCGCTCCGGGTTGGGCGG
CAACCGGGAGCGGGGCTGGGGCAGCGGCGTGGGAGATGGACGGAAAAGAG
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