mRNA_S-ischiensis_contig106.1888.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig106.1888.1
Unique NamemRNA_S-ischiensis_contig106.1888.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig106.1888.1 vs. uniprot
Match: D7FQJ6_ECTSI (Early-responsive to dehydration protein-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQJ6_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 1.010e-44
Identity = 76/121 (62.81%), Postives = 102/121 (84.30%), Query Frame = 1
Query:    1 QIFSLFSIYGLAVILPTNLQGGMGSSDSAKTTINTFNQLSMSNIRHYDGRMWVHAAGLWLLTFVAMYHLVVEYRFYTALRHKFLRRKAAHMRTIVVEGVPKDMRSNFKLFTYFNTLYPGEV 363
            ++F+LF+ YGL V++P N+      S+ A+T INTFN+LSMSN++HY+  MW+HA G++LL+ +AMY LVVEYR+YT LRH+FLRRK+AH+RTIVV+GVP++MRS+ KLFTYFNTLYP EV
Sbjct:  137 KVFALFAPYGLLVLIPVNVMETPSDSNQAQTNINTFNRLSMSNVQHYNPCMWLHALGIYLLSALAMYFLVVEYRYYTNLRHRFLRRKSAHLRTIVVQGVPREMRSDSKLFTYFNTLYPEEV 257          
BLAST of mRNA_S-ischiensis_contig106.1888.1 vs. uniprot
Match: A0A7S3UXJ8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXJ8_HETAK)

HSP 1 Score: 112 bits (279), Expect = 6.200e-27
Identity = 55/121 (45.45%), Postives = 76/121 (62.81%), Query Frame = 1
Query:    1 QIFSLFSIYGLAVILPTNLQGGMGSSDSAKTTINTFNQLSMSNIRHYDGRMWVHAAGLWLLTFVAMYHLVVEYRFYTALRHKFLRRKAAHMRTIVVEGVPKDMRSNFKLFTYFNTLYPGEV 363
            +IF +F++YGL V++P N  G  G           FN L++SNI      MW H  G++LLT + M+ LVVE+R YT LRH+FLRR+ A  R+++VE VP+ +RS   L  YF  LYPG+V
Sbjct:  104 RIFGIFAVYGLCVLIPVNALGSNGEQS-------LFNTLTLSNIADGSNTMWFHVVGMYLLTAITMWQLVVEFRTYTRLRHEFLRRRRALFRSVLVEEVPRPLRSQATLRAYFEKLYPGQV 217          
BLAST of mRNA_S-ischiensis_contig106.1888.1 vs. uniprot
Match: A0A836CHQ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHQ4_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.390e-25
Identity = 57/126 (45.24%), Postives = 78/126 (61.90%), Query Frame = 1
Query:    1 QIFSLFSIYGLAVILPTNLQGGMGSSDSAKTTINTFNQLSMSNIRHYDGR-----------------------------MWVHAAGLWLLTFVAMYHLVVEYRFYTALRHKFLRRKAAHMRTIVVE 291
            ++F +F++YGLAVI+P N+ GG  +S   +T+IN+FNQLSMSNI+HYD +                             MWVHA G++LLT +  Y L VE+RFY  LRH++L R+A H+RTIVVE
Sbjct:  143 KVFGIFALYGLAVIIPANIAGGQRNSFRVQTSINSFNQLSMSNIQHYDSKASALCIRRTSALKLAIVTEHCSSRLAELQMWVHAFGVYLLTALVQYFLYVEFRFYKQLRHEYLMRRAPHLRTIVVE 268          
BLAST of mRNA_S-ischiensis_contig106.1888.1 vs. uniprot
Match: A0A7S2W8T3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W8T3_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.290e-23
Identity = 45/117 (38.46%), Postives = 70/117 (59.83%), Query Frame = 1
Query:    7 FSLFSIYGLAVILPTNLQGGMGSSDSAKTTINTFNQLSMSNIRHYDGRMWVHAAGLWLLTFVAMYHLVVEYRFYTALRHKFLRRKAAHMRTIVVEGVPKDMRSNFKLFTYFNTLYPG 357
            FS F++ G  ++LP NL      S ++  T+NTF Q +MSN+   D R+WVH A  + L+ + +  L  E   YT LRH +L  ++  + TI+VE +P+ +RS  +L  YF+ +YPG
Sbjct:    1 FSSFAVVGFGIVLPVNLSCSYWGSQTSIETLNTFMQCTMSNVPAQDRRLWVHVAASFFLSMLTLRFLAAECESYTKLRHVYLGTQSVALHTILVERIPRQLRSQIRLAAYFSRMYPG 117          
BLAST of mRNA_S-ischiensis_contig106.1888.1 vs. uniprot
Match: A0A835Z3W6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3W6_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.510e-21
Identity = 49/121 (40.50%), Postives = 74/121 (61.16%), Query Frame = 1
Query:    1 QIFSLFSIYGLAVILPTNLQGGMGSSDSAKTTINTFNQLSMSNIRHYDGRMWVHAAGLWLLTFVAMYHLVVEYRFYTALRHKFLRRKAAHMRTIVVEGVPKDMRSNFKLFTYFNTLYPGEV 363
            +I +  ++Y L V+LP N+ G   + + A    N+F+ LSMSN+      +WVHA G  L+T  A + L  E+  YT LRH +L+ +A HMRTI++E VP +MR   +++ YFN LYP  +
Sbjct:    7 KISAATAVYALCVVLPVNVVGDNLTDEEASA--NSFSLLSMSNVAPGSATLWVHAVGTLLMTIAAFFFLNGEFTTYTRLRHAYLKMRAPHMRTILLEDVPAEMRGAAQIYIYFNHLYPNSI 125          
BLAST of mRNA_S-ischiensis_contig106.1888.1 vs. uniprot
Match: A0A6P8HPT7_ACTTE (CSC1-like protein ERD4 isoform X1 n=2 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HPT7_ACTTE)

HSP 1 Score: 77.8 bits (190), Expect = 2.890e-14
Identity = 37/113 (32.74%), Postives = 62/113 (54.87%), Query Frame = 1
Query:   25 YGLAVILPTNLQGGMGSSDSAKTTINTFNQLSMSNIRHYDGRMWVHAAGLWLLTFVAMYHLVVEYRFYTALRHKFLRRKAAHMRTIVVEGVPKDMRSNFKLFTYFNTLYPGEV 363
            YGLAV+LP N+ GG+G +  +K        L+MSN++    +MW H   +W+ T V  Y L  E+R +   R ++L +   H   +++  +PK +R    + TY + L+P +V
Sbjct:  128 YGLAVLLPLNVYGGVGLAGLSK--------LTMSNLKENSSKMWAHFVAVWVYTLVIFYMLYEEWRVFVVYRQEYLAKGLDHQYAVLLRDLPKRLRKEENMKTYVDELFPSQV 232          
BLAST of mRNA_S-ischiensis_contig106.1888.1 vs. uniprot
Match: A0A7S1VIW9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VIW9_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.370e-10
Identity = 33/88 (37.50%), Postives = 52/88 (59.09%), Query Frame = 1
Query:  115 LSMSNIRHYDGRMWVHAAGLWLLTFVAMYHLVVEYRFYTALRHKFLRRKAAHMR-----TIVVEGVPKDMRSNFKLFTYFNTLYPGEV 363
            LSM+N+++   ++W     LWLLTF  ++ +  EY+ Y   R +FL +  A        T++VE VPK++RS+  L  YF  L+PG+V
Sbjct:    2 LSMANLQNGSWKLWFPTIFLWLLTFYVVFMMNEEYKHYVECRMEFLAKGDARTHPQQRYTLLVEQVPKELRSDLALKEYFGQLFPGKV 89          
BLAST of mRNA_S-ischiensis_contig106.1888.1 vs. uniprot
Match: A7SQ88_NEMVE (Predicted protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SQ88_NEMVE)

HSP 1 Score: 66.6 bits (161), Expect = 2.000e-10
Identity = 34/113 (30.09%), Postives = 56/113 (49.56%), Query Frame = 1
Query:   25 YGLAVILPTNLQGGMGSSDSAKTTINTFNQLSMSNIRHYDGRMWVHAAGLWLLTFVAMYHLVVEYRFYTALRHKFLRRKAAHMRTIVVEGVPKDMRSNFKLFTYFNTLYPGEV 363
            YG+ V+LP NL GG+  S   K        L+MSN+     + W H  G+W  T +  Y L  E++ Y   R K L +   H   +++ G+   +++   L  Y + ++PG+V
Sbjct:  142 YGIIVLLPLNLHGGLHLSGLDK--------LTMSNMHEKSTKAWAHLVGVWAYTLIICYLLYKEWQVYLVYRRKHLAKGLPHQYAVLLRGLTSKLKNRETLRKYADGIFPGQV 246          
BLAST of mRNA_S-ischiensis_contig106.1888.1 vs. uniprot
Match: A0A372QKM0_9GLOM (Late exocytosis, associated with Golgi transport-domain-containing protein n=1 Tax=Rhizophagus sp. MUCL 43196 TaxID=1803374 RepID=A0A372QKM0_9GLOM)

HSP 1 Score: 60.8 bits (146), Expect = 2.500e-9
Identity = 41/124 (33.06%), Postives = 64/124 (51.61%), Query Frame = 1
Query:    4 IFSLFSIYGLAVILPTNLQGGMGSSDSAKTTINTFNQLSMSNIRHYDGRMWVHAAGLWLLTFVAMYHLVVEYRFYTALRHKFLR----RKAAHMRTIVVEGVPKDMRSNFKLFTYFNTLYPGEV 363
            +F++FSI+GLAV+LP N      +    K TI         NIR  + R+W H    WL + + MY L  E+  +  LRH++      R +    TI V G+PK++ ++  L   F+ ++PG V
Sbjct:   12 LFAIFSIFGLAVLLPINSVNQGDNLGLEKFTI--------GNIRD-NKRLWSHVIFTWLFSGITMYALYREFNTFIRLRHEYHTTDEYRNSXRATTIXVTGIPKELNNSESLKALFD-IFPGGV 125          
BLAST of mRNA_S-ischiensis_contig106.1888.1 vs. uniprot
Match: A0A7S1XLF6_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XLF6_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.910e-9
Identity = 39/126 (30.95%), Postives = 68/126 (53.97%), Query Frame = 1
Query:    1 QIFSLFSIYGLAVILPTNLQGGMGSSDSAKTTINTFNQLSMSNIRHYDGRMWVHAAGLWLLTFVAMYHLVVEYRFYTALRHKFL----RRKAAHMR-TIVVEGVPKDMRSNFKLFTYFNTLYPGEV 363
            +IF   + +GL+ ++P   QG  G++D       TF   +M+NI      +WV     +L    A + +  EY+ +  LR++F     R   A  R +I+VEGVP+ +R++  L+ YF+ ++PG+V
Sbjct:  134 RIFLFAAFWGLSCLVPFYEQGEQGTAD-------TFYHTTMANIEQGSDNIWVTTFFAYLFCAHAFFLIDAEYKAFMGLRNQFFLHGTRETVAQARYSILVEGVPRHLRTSSALYKYFDEIFPGKV 252          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig106.1888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7FQJ6_ECTSI1.010e-4462.81Early-responsive to dehydration protein-related n=... [more]
A0A7S3UXJ8_HETAK6.200e-2745.45Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A836CHQ4_9STRA1.390e-2545.24Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2W8T3_9STRA3.290e-2338.46Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A835Z3W6_9STRA1.510e-2140.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6P8HPT7_ACTTE2.890e-1432.74CSC1-like protein ERD4 isoform X1 n=2 Tax=Actinia ... [more]
A0A7S1VIW9_9STRA1.370e-1037.50Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A7SQ88_NEMVE2.000e-1030.09Predicted protein n=1 Tax=Nematostella vectensis T... [more]
A0A372QKM0_9GLOM2.500e-933.06Late exocytosis, associated with Golgi transport-d... [more]
A0A7S1XLF6_9STRA2.910e-930.95Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig106contigS-ischiensis_contig106:244323..244685 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.9
Seed ortholog evalue2.4e-38
Seed eggNOG ortholog2880.D7FQJ6
EggNOG free text desc.ion transport
EggNOG OGsCOG5594@1,KOG1134@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionearly-responsive to dehydration protein-related
Ec32 orthologEc-01_008930.1
Exons1
Model size363
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.5239573-CDS-S-ischiensis_contig106:244322..2446851622815569.5239573-CDS-S-ischiensis_contig106:244322..244685Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 244323..244685 +
1695739776.22458-CDS-S-ischiensis_contig106:244322..2446851695739776.22458-CDS-S-ischiensis_contig106:244322..244685Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 244323..244685 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig106.1888.1prot_S-ischiensis_contig106.1888.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig106 244323..244685 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig106.1888.1

>prot_S-ischiensis_contig106.1888.1 ID=prot_S-ischiensis_contig106.1888.1|Name=mRNA_S-ischiensis_contig106.1888.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=121bp
QIFSLFSIYGLAVILPTNLQGGMGSSDSAKTTINTFNQLSMSNIRHYDGR
MWVHAAGLWLLTFVAMYHLVVEYRFYTALRHKFLRRKAAHMRTIVVEGVP
KDMRSNFKLFTYFNTLYPGEV
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mRNA from alignment at S-ischiensis_contig106:244323..244685+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig106.1888.1 ID=mRNA_S-ischiensis_contig106.1888.1|Name=mRNA_S-ischiensis_contig106.1888.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=363bp|location=Sequence derived from alignment at S-ischiensis_contig106:244323..244685+ (Schizocladia ischiensis KU_0333)
CAGATATTCTCCCTTTTCTCCATCTATGGGCTGGCGGTCATCCTGCCCAC GAACCTGCAGGGCGGGATGGGCTCGTCGGACAGCGCCAAGACCACCATCA ACACCTTCAACCAGCTCTCCATGTCCAACATTCGGCACTACGACGGCCGC ATGTGGGTGCATGCGGCGGGCCTGTGGCTCCTGACCTTCGTGGCCATGTA CCACCTGGTGGTGGAGTACCGCTTCTACACCGCCCTGAGGCACAAGTTCC TCCGCCGGAAGGCCGCGCACATGCGCACCATCGTGGTGGAGGGCGTGCCC AAGGACATGCGCTCCAACTTCAAGCTCTTCACCTACTTCAACACGCTCTA CCCCGGCGAGGTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig106:244323..244685+

>mRNA_S-ischiensis_contig106.1888.1 ID=mRNA_S-ischiensis_contig106.1888.1|Name=mRNA_S-ischiensis_contig106.1888.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=726bp|location=Sequence derived from alignment at S-ischiensis_contig106:244323..244685+ (Schizocladia ischiensis KU_0333)
CAGATATTCTCCCTTTTCTCCATCTATGGGCTGGCGGTCATCCTGCCCAC
GAACCTGCAGGGCGGGATGGGCTCGTCGGACAGCGCCAAGACCACCATCA
ACACCTTCAACCAGCTCTCCATGTCCAACATTCGGCACTACGACGGCCGC
ATGTGGGTGCATGCGGCGGGCCTGTGGCTCCTGACCTTCGTGGCCATGTA
CCACCTGGTGGTGGAGTACCGCTTCTACACCGCCCTGAGGCACAAGTTCC
TCCGCCGGAAGGCCGCGCACATGCGCACCATCGTGGTGGAGGGCGTGCCC
AAGGACATGCGCTCCAACTTCAAGCTCTTCACCTACTTCAACACGCTCTA
CCCCGGCGAGGTGCAGATATTCTCCCTTTTCTCCATCTATGGGCTGGCGG
TCATCCTGCCCACGAACCTGCAGGGCGGGATGGGCTCGTCGGACAGCGCC
AAGACCACCATCAACACCTTCAACCAGCTCTCCATGTCCAACATTCGGCA
CTACGACGGCCGCATGTGGGTGCATGCGGCGGGCCTGTGGCTCCTGACCT
TCGTGGCCATGTACCACCTGGTGGTGGAGTACCGCTTCTACACCGCCCTG
AGGCACAAGTTCCTCCGCCGGAAGGCCGCGCACATGCGCACCATCGTGGT
GGAGGGCGTGCCCAAGGACATGCGCTCCAACTTCAAGCTCTTCACCTACT
TCAACACGCTCTACCCCGGCGAGGTG
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