|
|
Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal peptide |
| Exons | 3 |
| Model size | 1597 |
| Cds size | 678 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815568.9374182-UTR-S-ischiensis_contig106:207006..207077 | 1622815568.9374182-UTR-S-ischiensis_contig106:207006..207077 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig106 207007..207077 + |
| 1695739775.8944037-UTR-S-ischiensis_contig106:207006..207077 | 1695739775.8944037-UTR-S-ischiensis_contig106:207006..207077 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig106 207007..207077 + |
| 1622815568.9919162-UTR-S-ischiensis_contig106:208354..209202 | 1622815568.9919162-UTR-S-ischiensis_contig106:208354..209202 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig106 208355..209202 + |
| 1695739775.93012-UTR-S-ischiensis_contig106:208354..209202 | 1695739775.93012-UTR-S-ischiensis_contig106:208354..209202 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig106 208355..209202 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815568.951062-CDS-S-ischiensis_contig106:207077..207572 | 1622815568.951062-CDS-S-ischiensis_contig106:207077..207572 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig106 207078..207572 + |
| 1695739775.9045815-CDS-S-ischiensis_contig106:207077..207572 | 1695739775.9045815-CDS-S-ischiensis_contig106:207077..207572 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig106 207078..207572 + |
| 1622815568.9641402-CDS-S-ischiensis_contig106:207785..207833 | 1622815568.9641402-CDS-S-ischiensis_contig106:207785..207833 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig106 207786..207833 + |
| 1695739775.9126067-CDS-S-ischiensis_contig106:207785..207833 | 1695739775.9126067-CDS-S-ischiensis_contig106:207785..207833 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig106 207786..207833 + |
| 1622815568.9738467-CDS-S-ischiensis_contig106:208219..208354 | 1622815568.9738467-CDS-S-ischiensis_contig106:208219..208354 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig106 208220..208354 + |
| 1695739775.9221613-CDS-S-ischiensis_contig106:208219..208354 | 1695739775.9221613-CDS-S-ischiensis_contig106:208219..208354 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig106 208220..208354 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig106.1883.1 >prot_S-ischiensis_contig106.1883.1 ID=prot_S-ischiensis_contig106.1883.1|Name=mRNA_S-ischiensis_contig106.1883.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=226bp
MCRVTVVWHALLCASMMAGWAWLWKQGLMGPLLASKFTIWNWCVVSLHFV
LSCWGGVSLCLNSRREGGGVNSPSEGLVAKTFHLSFASSTTMTVIFWSLF
LFDKRLIIPDTFTEDVLPLGLNLLLHLWPLAALLLDLAAVPHPPGPLGQQ
LIWITVYAFGHSASQVGEFLATGGWPYPFMKYFSAGHYVGLIVVGAALAV
GGLMLSRMLASARASLAEKGHNKAS* back to topmRNA from alignment at S-ischiensis_contig106:207007..209202+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig106.1883.1 ID=mRNA_S-ischiensis_contig106.1883.1|Name=mRNA_S-ischiensis_contig106.1883.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2196bp|location=Sequence derived from alignment at S-ischiensis_contig106:207007..209202+ (Schizocladia ischiensis KU_0333)
CTTGTCTTGTGACGGGGCGGTGATTCGGTGCCTTTGCCGTACAAGTGTGC
GTCTTGGCGTGCAAAAGTAACATGTGTAGGGTCACGGTCGTGTGGCACGC
GCTGCTGTGCGCCTCCATGATGGCAGGGTGGGCGTGGCTGTGGAAGCAGG
GGTTGATGGGCCCGCTGCTAGCGTCAAAGTTCACGATCTGGAATTGGTGT
GTGGTGTCCCTGCATTTTGTGCTCAGTTGTTGGGGCGGCGTGAGTCTGTG
CCTGAACAGCAGGCGAGAAGGGGGGGGTGTCAACAGTCCGAGCGAAGGCT
TGGTCGCAAAGACTTTCCACCTTTCCTTCGCGTCCAGCACCACCATGACG
GTCATATTTTGGAGCCTCTTCCTGTTTGACAAGCGGCTCATCATCCCAGA
CACGTTCACAGAAGACGTGCTCCCGCTGGGGTTGAACCTCCTCCTGCATC
TGTGGCCGCTGGCCGCTCTGCTGCTGGACCTCGCCGCTGTCCCTCACCCC
CCAGGCCCCCTGGGGCAACAGCTGATTTGGATCACCGTGTACGCTTTCGG
CCACTCGGCCTCACAGGTACGTACCTACGCCCGGTTCGATAGGAAGGCTT
CAGACGTATGTCTACGCTTTCGGCCACTCGGCCTCACAGGTACGTACCTA
CGCCCGGTTCGATAGGTAGGCTTCAGACGTATGTCGTTGCTCCACAGACG
TGTCGTAAGTATGCCGGGTGGATGATGTTTCATATGCCCACCCCATCTCG
TCCCACCCCCCGCTTCTGACCCGACGCAGGTGGGAGAGTTCTTGGCCACT
GGAGGCTGGCCCTACCCCTTCATGAAGGTAAGAACTGAAGATGCCGCAGG
GCTTTGGCCGGAGTTGACTGCGTGTCACCCCGGGTCGAGGCACCCCACGC
TGTGTTGCCAAAACGCAGCATTAAAAATCGTGTGCACACACGCCTTGAGA
ACGCTAGTGCTGTTGCTAAGTTACTTGGAGTGCACCGCACTCGAGTGCAA
CCGTTAGAGAACTTAAAACCATTTCAGTATCTCAATAGATGGAACCGCAC
TGCGCAGTGCAAGGGGGGGCGACAAATCTGTGCTGCTCACCACATCCACT
TCACCCCAGCTACAAGTAAAGCTATTGCCGGGGCCCAGAGCCATGCGTTC
AATTACTGGTGATAACACGCACATCTCCCCAACCCCCCCCCCCCCCCGGT
TCTCCACCTGCAGTATTTTTCTGCTGGGCACTACGTTGGGCTGATCGTGG
TGGGAGCGGCTCTAGCGGTTGGCGGGCTCATGCTCTCCAGAATGTTAGCA
TCGGCGAGAGCCTCCCTTGCCGAAAAGGGGCACAACAAAGCCAGTTGAGA
TGCAGAGTTGTTCGTTTGTGTCGAAGCACCTCGTCTCGTGGTTGAACGGT
GTTCATTACCACCGTGTGGCCACACGTCTGTAGGGTGATCAAGCCTGTAT
ACGTGGCAGGCTGCAGGTGCCGGACGTCATAGCGACATGGCTGGCCACGG
AGAGGGGCATACCCGGCACCTGCGGCCCACCTCGTGCACAGGCTTGATCA
CCCTACAGACGCGCGGCCACACGGCGGTAATGAACACCGTTCAACCATGA
GATGAGGCACTTCGACAGGTTATGAGCCCTGGCCGGGATTCGAACCCTTG
ACGTCGTGCATGACAGAACGGCGGGGAAGGCCATTTGACTAACCTGTGCA
GGTTAGTCAAACGGCGTGCGCAGGTTAGTCAAGTCAAATGGCGTGCGCAG
GTTAGTCAAACGGCGTTCCCCGCCGTTCTGACAGTTTGCATGTCACCCAC
GATGGTTTTGAGGGCCCCGCCCGCCCCTGGGTCCTCCCGGTAGCACACAT
CTATCTTGTCAGTCCCAACAGCACTTAGCTTGTACTTGAGGCATGAATAG
TTTGAGCGTTGTGCGGCCGCACCGGCTGTTGCTGGCCGTTGCCTTCATCA
TTTTGCGTGCACGGTACTTGTGTGCTACAGTACAGTACAGTAGTACAGTT
CACTTGTACCACAGTATGTACAATGACACAAAGTGAACAAAGCGAGTGTG
GTCATCAGAACCCCATCGGTGGACCTTCATTTTCGGAACTGGGGTGCTGG
CAAGAGCACCGTACCTAGTTTAGGGCTCAGGGCTGTGTAGAAGAGGGCAG
TGTACAAACGTGGCAATGGGACAAGACGGAGCAAGTCACAATCCAC back to topCoding sequence (CDS) from alignment at S-ischiensis_contig106:207007..209202+ >mRNA_S-ischiensis_contig106.1883.1 ID=mRNA_S-ischiensis_contig106.1883.1|Name=mRNA_S-ischiensis_contig106.1883.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1356bp|location=Sequence derived from alignment at S-ischiensis_contig106:207007..209202+ (Schizocladia ischiensis KU_0333)
ATGTGTAGGGTCACGGTCGTGTGGCACGCGCTGCTGTGCGCCTCCATGAT
GGCAGGGTGGGCGTGGCTGTGGAAGCAGGGGTTGATGGGCCCGCTGCTAG
CGTCAAAGTTCACGATCTGGAATTGGTGTGTGGTGTCCCTGCATTTTGTG
CTCAGTTGTTGGGGCGGCGTGAGTCTGTGCCTGAACAGCAGGCGAGAAGG
GGGGGGTGTCAACAGTCCGAGCGAAGGCTTGGTCGCAAAGACTTTCCACC
TTTCCTTCGCGTCCAGCACCACCATGACGGTCATATTTTGGAGCCTCTTC
CTGTTTGACAAGCGGCTCATCATCCCAGACACGTTCACAGAAGACGTGCT
CCCGCTGGGGTTGAACCTCCTCCTGCATCTGTGGCCGCTGGCCGCTCTGC
TGCTGGACCTCGCCGCTGTCCCTCACCCCCCAGGCCCCCTGGGGCAACAG
CTGATTTGGATCACCGTGTACGCTTTCGGCCACTCGGCCTCACAGATGTG
TAGGGTCACGGTCGTGTGGCACGCGCTGCTGTGCGCCTCCATGATGGCAG
GGTGGGCGTGGCTGTGGAAGCAGGGGTTGATGGGCCCGCTGCTAGCGTCA
AAGTTCACGATCTGGAATTGGTGTGTGGTGTCCCTGCATTTTGTGCTCAG
TTGTTGGGGCGGCGTGAGTCTGTGCCTGAACAGCAGGCGAGAAGGGGGGG
GTGTCAACAGTCCGAGCGAAGGCTTGGTCGCAAAGACTTTCCACCTTTCC
TTCGCGTCCAGCACCACCATGACGGTCATATTTTGGAGCCTCTTCCTGTT
TGACAAGCGGCTCATCATCCCAGACACGTTCACAGAAGACGTGCTCCCGC
TGGGGTTGAACCTCCTCCTGCATCTGTGGCCGCTGGCCGCTCTGCTGCTG
GACCTCGCCGCTGTCCCTCACCCCCCAGGCCCCCTGGGGCAACAGCTGAT
TTGGATCACCGTGTACGCTTTCGGCCACTCGGCCTCACAGGTGGGAGAGT
TCTTGGCCACTGGAGGCTGGCCCTACCCCTTCATGAAGGTGGGAGAGTTC
TTGGCCACTGGAGGCTGGCCCTACCCCTTCATGAAGTATTTTTCTGCTGG
GCACTACGTTGGGCTGATCGTGGTGGGAGCGGCTCTAGCGGTTGGCGGGC
TCATGCTCTCCAGAATGTTAGCATCGGCGAGAGCCTCCCTTGCCGAAAAG
GGGCACAACAAAGCCAGTTGATATTTTTCTGCTGGGCACTACGTTGGGCT
GATCGTGGTGGGAGCGGCTCTAGCGGTTGGCGGGCTCATGCTCTCCAGAA
TGTTAGCATCGGCGAGAGCCTCCCTTGCCGAAAAGGGGCACAACAAAGCC
AGTTGA back to top
|