mRNA_S-ischiensis_contig106.1876.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig106.1876.1
Unique NamemRNA_S-ischiensis_contig106.1876.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig106.1876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig106contigS-ischiensis_contig106:155851..158186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size266
Cds size264
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.4451518-CDS-S-ischiensis_contig106:155850..1560331622815566.4451518-CDS-S-ischiensis_contig106:155850..156033Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 155851..156033 -
1695739774.238751-CDS-S-ischiensis_contig106:155850..1560331695739774.238751-CDS-S-ischiensis_contig106:155850..156033Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 155851..156033 -
1622815566.4595876-CDS-S-ischiensis_contig106:158105..1581861622815566.4595876-CDS-S-ischiensis_contig106:158105..158186Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 158106..158186 -
1695739774.2469513-CDS-S-ischiensis_contig106:158105..1581861695739774.2469513-CDS-S-ischiensis_contig106:158105..158186Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 158106..158186 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig106.1876.1prot_S-ischiensis_contig106.1876.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig106 155851..158186 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig106.1876.1

>prot_S-ischiensis_contig106.1876.1 ID=prot_S-ischiensis_contig106.1876.1|Name=mRNA_S-ischiensis_contig106.1876.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=88bp
MRRCRTGWWWWQRGCTEKRRQRQKSQQVGCVLQRPACPAETLPAQRAGPI
CMHQHHRGEGRGSSRRCCRRCRLWWLAHPAWSHRMQRL
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mRNA from alignment at S-ischiensis_contig106:155851..158186-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig106.1876.1 ID=mRNA_S-ischiensis_contig106.1876.1|Name=mRNA_S-ischiensis_contig106.1876.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2336bp|location=Sequence derived from alignment at S-ischiensis_contig106:155851..158186- (Schizocladia ischiensis KU_0333)
ATGCGGCGGTGTAGAACAGGGTGGTGGTGGTGGCAGAGGGGGTGCACGGA
GAAGAGGAGGCAAAGGCAAAAGAGCCAGCAGGTACTGGACTGTATACTTT
GTACTATGTTGTTATACTACGTACAATATATATACTATGTTGTTGCGTTA
CAGTGCAGTTTGAATAATGTACAGAGAAGAGGAGGCAAAGGCCATGGGCA
AACAAGAGCCAGCAGGTGCTGCGCTGTGTAGTTTGTACTACAGGTATGTT
GTTGCGCTACAGTGCAGTTTGAATAGTGTGCTGTAGTGTACTGTAGTGTA
TTGTGCTGCGTACAGTACAGTGCAGTAGCTGGAAGTACAACCCCCCAGCC
ATTGTCTGTGTTGCGTATATACCAGTACGTGTACTCACCTTGTGCTTGCC
ATAGTCCCGAGACCATTTAACACGCACCGTTGACGACGGAGCAATCTCCC
TCCCTTGTGTGTAGAATAGTTTGCTCGTGCGAATACAGCAGTACTGTAGT
TTGAGGTTTACTACAAACCTCGTCCGAACGTGAGTGCACACTACAGGCTT
CAGCAGAATGCACACTGCACTACTGTAGCGTTGTGCTCGCTACTGTACAA
GCAAGCGGTACATACTGTACTACTACTGTAGAGTAGTACACAGGAACCAA
CTCCCAAGTGTCCGCAGTGGTGGTTGATTCTACACGAAGGGTAAACTCTT
CGATCGGGTCCTGTTTCGGGACAAACCTTTTAACCTTTTGGCACGGGGCC
CATAACCCGCCGCTTTTCTACCAATCAAATAAGCAAATTATCACAATTCT
CAAAGTGATGGGCCTGGTTTACCTACTGCACTGTACTTTTCTCCGCTGGA
GTTGAGCTTTCTGCAAGCGCACACGCGAGCTACAAGTATGTTCGTATTTT
CCTACTGTATGCGAGAGTCCATGGCTAAATAGCTAGCTCTACTCCTGTCG
GAGGGCAAACCCGAAGTTTCGACTTAGGGCTGTCGGCATTGCACGCAAGG
TTATGTCGCAAGACGAACCAAATGGGTGCATATATATATATATATATATA
TGCACATACTGTACAGACATGTACTACTGTGCTCGTACGTGCTCTATGTA
CAGTATAGTACTGTACAGTAGTTGATGTCCTTGCTTGGTACTGTAGAATA
CACTGTACACATGTGAGAGGTCAGTATGCGTGGTCAGCACCGGTGTCGGG
ACACTGGCACACGCGACATGAGCAGGAGTGTGTTTATTGATAGTGTACAG
TACACCACATGCTGCCTACAGCAGTGGTGAATGGCCTGTGGAAAATTGAG
GTGAACACACACCACACAGACAGCATACATATATACGTGAAGGTATATAT
ATACGTGTGTGTCTACTCATGTGGTGCTTGCCGCAGTCCCGAGACCATTG
ACCCCGCGCCTCTTTAGAGATGGAGCAGGTCCAAAGTATATTCAGTGGTC
TATGGGCTACGGCAAGCTCTGTTGGATGTGAGGACAGCACAGACTATATA
TATATATATATATGTATGTACTCACGTGGTGCTTGCCGTAGTCCCGAGAC
CATTGACCCCGCGCCTCGTTCGAGACAGAATACTGTTGTGCAGTACCGTA
GTCGTCGGAGACTTCTTGCCCCCACGGGACAATTTTCGGGGGAATTTTTC
TAGCCGGGAAGGTCCTGAATTGTCCCGAAAGATCTCGGAAAAGTTCCCCC
AGGTCGTGAGGGAGATTTTCCGAGTTTTCCCGCGCGAATCCGGCCAGTAT
TCGGCAAGAAAGTATCTCCCAAAAATTGGCATGGGGGGGCAAGATCTCTC
CAACGATTACGGTACACTCAGCAGTACTGGAGTGTATCCTCCCCCTCCTC
CGTTCCCATCCCCGCGTGCTATTCCCCCACCCCCCCTGCGCTCCACGCCT
GCTCACTCCTTCCCTTCCCCCGCACTCACTCCTCTCCCCCTCCCCCGCCT
CCTCCTCCGCTTCCTCCCCGTCCTCCTCCCCCTCCTCCCTTTCTCCCCTT
TCCCATACAAACTTCCCCTGGCGAGCTGTAGAGCTCTAAGGAAGGCGTGT
TCCACTGCTGAGGTGTTTAGTGACGTGGCCTGCACCTCGCCCTGTGTTGT
TCCTGTTAGCACAACGTGCAACTTACCTATGCCCACACGCCTTCCAACAC
CAGGTGGGGTGTGTCCTACAACGCCCTGCCTGTCCGGCGGAAACCCTCCC
TGCCCAACGTGCGGGACCCATCTGTATGCATCAGCACCACAGAGGAGAAG
GACGGGGATCAAGCCGCCGCTGCTGTCGTCGTTGCCGCCTCTGGTGGCTT
GCCCACCCTGCCTGGAGCCATCGTATGCAACGCCTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig106:155851..158186-

>mRNA_S-ischiensis_contig106.1876.1 ID=mRNA_S-ischiensis_contig106.1876.1|Name=mRNA_S-ischiensis_contig106.1876.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=528bp|location=Sequence derived from alignment at S-ischiensis_contig106:155851..158186- (Schizocladia ischiensis KU_0333)
ATGCGGCGGTGTAGAACAGGGTGGTGGTGGTGGCAGAGGGGGTGCACGGA
GAAGAGGAGGCAAAGGCAAAAGAGCCAGCAGATGCGGCGGTGTAGAACAG
GGTGGTGGTGGTGGCAGAGGGGGTGCACGGAGAAGAGGAGGCAAAGGCAA
AAGAGCCAGCAGGTGGGGTGTGTCCTACAACGCCCTGCCTGTCCGGCGGA
AACCCTCCCTGCCCAACGTGCGGGACCCATCTGTATGCATCAGCACCACA
GAGGAGAAGGACGGGGATCAAGCCGCCGCTGCTGTCGTCGTTGCCGCCTC
TGGTGGCTTGCCCACCCTGCCTGGAGCCATCGTATGCAACGCCTGGTGGG
GTGTGTCCTACAACGCCCTGCCTGTCCGGCGGAAACCCTCCCTGCCCAAC
GTGCGGGACCCATCTGTATGCATCAGCACCACAGAGGAGAAGGACGGGGA
TCAAGCCGCCGCTGCTGTCGTCGTTGCCGCCTCTGGTGGCTTGCCCACCC
TGCCTGGAGCCATCGTATGCAACGCCTG
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