mRNA_S-ischiensis_contig106.1875.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig106.1875.1
Unique NamemRNA_S-ischiensis_contig106.1875.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig106.1875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig106contigS-ischiensis_contig106:147607..148088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size252
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815568.3137913-CDS-S-ischiensis_contig106:147606..1477471622815568.3137913-CDS-S-ischiensis_contig106:147606..147747Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 147607..147747 +
1695739775.475524-CDS-S-ischiensis_contig106:147606..1477471695739775.475524-CDS-S-ischiensis_contig106:147606..147747Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 147607..147747 +
1622815568.3247442-CDS-S-ischiensis_contig106:147978..1480861622815568.3247442-CDS-S-ischiensis_contig106:147978..148086Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 147979..148086 +
1695739775.482886-CDS-S-ischiensis_contig106:147978..1480861695739775.482886-CDS-S-ischiensis_contig106:147978..148086Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 147979..148086 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig106.1875.1prot_S-ischiensis_contig106.1875.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig106 147607..148086 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig106.1875.1

>prot_S-ischiensis_contig106.1875.1 ID=prot_S-ischiensis_contig106.1875.1|Name=mRNA_S-ischiensis_contig106.1875.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=83bp
TSALEGGRFNPDAFGFTGCTVVYDTDELKPGDLTVGHICREDYFWVKESS
DISAAMQTMEGKGVRYLPVLKGAGQHTGGLVEG
back to top

mRNA from alignment at S-ischiensis_contig106:147607..148088+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig106.1875.1 ID=mRNA_S-ischiensis_contig106.1875.1|Name=mRNA_S-ischiensis_contig106.1875.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=482bp|location=Sequence derived from alignment at S-ischiensis_contig106:147607..148088+ (Schizocladia ischiensis KU_0333)
ACGTCGGCGTTGGAGGGGGGGCGGTTTAACCCGGACGCGTTTGGGTTCAC
GGGGTGCACGGTGGTGTATGATACCGATGAGCTCAAGCCAGGGGACTTGA
CGGTGGGGCACATATGCCGCGAGGACTACTTCTGGGTCAAGGTGAGAGGA
GGGAGGGGAGGAGGGGAGCGAGGGAGGGGTGGTGGGGGGGGGGGTTCTCG
AGAGTGGCTGACAGCACTTCCATGTCGCAACAGAGCTATTGTAGCGCGAC
CTTTTACATCAAGTACTTCAAAGTACTTTAAAGTGCACGCGGTAGCTGCA
ACTGTTGTATGTACACCAGCGCTGAATGAACCCGTGGCCCCACTGGCACC
GCTGGCACCCTGCCCCGAGCAGGAAAGCTCCGACATCAGCGCTGCCATGC
AGACCATGGAGGGCAAGGGCGTGCGCTACCTGCCCGTGCTCAAAGGGGCC
GGGCAGCACACGGGGGGGCTCGTGGAAGGGGG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig106:147607..148088+

>mRNA_S-ischiensis_contig106.1875.1 ID=mRNA_S-ischiensis_contig106.1875.1|Name=mRNA_S-ischiensis_contig106.1875.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=498bp|location=Sequence derived from alignment at S-ischiensis_contig106:147607..148088+ (Schizocladia ischiensis KU_0333)
ACGTCGGCGTTGGAGGGGGGGCGGTTTAACCCGGACGCGTTTGGGTTCAC
GGGGTGCACGGTGGTGTATGATACCGATGAGCTCAAGCCAGGGGACTTGA
CGGTGGGGCACATATGCCGCGAGGACTACTTCTGGGTCAAGACGTCGGCG
TTGGAGGGGGGGCGGTTTAACCCGGACGCGTTTGGGTTCACGGGGTGCAC
GGTGGTGTATGATACCGATGAGCTCAAGCCAGGGGACTTGACGGTGGGGC
ACATATGCCGCGAGGACTACTTCTGGGTCAAGGAAAGCTCCGACATCAGC
GCTGCCATGCAGACCATGGAGGGCAAGGGCGTGCGCTACCTGCCCGTGCT
CAAAGGGGCCGGGCAGCACACGGGGGGGCTCGTGGAAGGGGAAAGCTCCG
ACATCAGCGCTGCCATGCAGACCATGGAGGGCAAGGGCGTGCGCTACCTG
CCCGTGCTCAAAGGGGCCGGGCAGCACACGGGGGGGCTCGTGGAAGGG
back to top