mRNA_S-ischiensis_contig106.1869.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig106.1869.1
Unique NamemRNA_S-ischiensis_contig106.1869.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig106.1869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig106contigS-ischiensis_contig106:105937..107312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1376
Cds size1374
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.7579932-CDS-S-ischiensis_contig106:105936..1073101622815566.7579932-CDS-S-ischiensis_contig106:105936..107310Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 105937..107310 +
1695739774.3644812-CDS-S-ischiensis_contig106:105936..1073101695739774.3644812-CDS-S-ischiensis_contig106:105936..107310Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 105937..107310 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig106.1869.1prot_S-ischiensis_contig106.1869.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig106 105937..107310 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig106.1869.1

>prot_S-ischiensis_contig106.1869.1 ID=prot_S-ischiensis_contig106.1869.1|Name=mRNA_S-ischiensis_contig106.1869.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=458bp
GAAAAVGDDSPLQPTDAPGGGDKKHEATVTAAVSSESLPSAREPERHFET
PQASPDLPAEAARSPQASAPPPPQHAQPTVGSFPDNGARGGGGAEEAGPP
VPPKGPEEPPSAELHGVAAAGEQTPEQAVAPVAAPTGAAASGATVIAARS
GGDGGGRDGGGGNPGGPRLGRSTRSPGGGGGGGGGPSWRIPATGRIRSPG
GGPRPDDAAAQPSSRVRPGRQSITCALCLVKPTSTATLCRGCARACAAAL
KRLHGARAARRLLCLYGAEHGIRERDPVEAEGPAVRQWARLHDDDTDRDL
YYNVYADVALWKGEFEIREPPLVGAVAGGGRRRYGRGGRGGGTSGGTSRL
MSASSRMGSGFSSAATSRRSLGRSRRRGGGEAAASSRSVLLAEGEKESPR
PDVVEDAHRRLYPASRINGEGDGEDEPAAEPGMSASAVLGTQAGAGMGGV
RGSKAGAT
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mRNA from alignment at S-ischiensis_contig106:105937..107312+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig106.1869.1 ID=mRNA_S-ischiensis_contig106.1869.1|Name=mRNA_S-ischiensis_contig106.1869.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1376bp|location=Sequence derived from alignment at S-ischiensis_contig106:105937..107312+ (Schizocladia ischiensis KU_0333)
GGAGCTGCGGCGGCGGTGGGGGACGACAGCCCTCTGCAGCCAACCGACGC
ACCGGGGGGGGGCGACAAGAAGCACGAGGCGACCGTGACGGCGGCAGTGA
GCTCGGAGTCGCTGCCGAGCGCACGTGAGCCTGAGAGACACTTTGAGACC
CCTCAGGCAAGCCCTGATCTGCCAGCAGAGGCGGCACGGTCGCCACAGGC
CAGCGCCCCTCCCCCTCCGCAGCACGCGCAACCAACTGTCGGGAGCTTCC
CTGACAACGGTGCCCGCGGTGGTGGCGGGGCAGAAGAGGCAGGCCCGCCC
GTCCCACCGAAAGGCCCGGAGGAGCCGCCCAGTGCTGAGCTGCATGGGGT
GGCAGCGGCAGGCGAGCAGACACCTGAGCAGGCGGTGGCACCCGTTGCCG
CACCTACGGGGGCTGCTGCCAGCGGGGCAACCGTCATCGCAGCCAGAAGT
GGCGGCGATGGCGGTGGCAGAGACGGCGGGGGCGGCAACCCCGGTGGCCC
CAGACTGGGAAGGAGCACGAGGAGCCCCGGCGGCGGCGGCGGCGGCGGCG
GCGGCCCCAGCTGGAGAATCCCCGCAACAGGAAGAATAAGGAGCCCTGGC
GGGGGGCCGAGGCCCGACGACGCGGCGGCCCAGCCATCGTCCCGCGTGCG
CCCGGGCCGGCAGTCCATAACCTGCGCCCTGTGCCTGGTCAAGCCGACGT
CGACCGCGACGCTGTGCCGCGGGTGCGCGCGTGCCTGCGCGGCGGCGCTT
AAGCGCCTGCACGGGGCGCGGGCGGCGCGGCGGCTGCTGTGCCTGTACGG
GGCGGAGCATGGCATCCGTGAGAGGGACCCGGTGGAGGCAGAGGGCCCGG
CCGTGCGCCAGTGGGCGCGCCTGCACGACGACGACACCGACCGCGACCTC
TACTACAATGTTTACGCGGACGTCGCGCTGTGGAAGGGCGAGTTCGAGAT
ACGGGAACCGCCCCTGGTCGGCGCCGTCGCCGGCGGGGGCCGCCGGCGGT
ACGGCCGTGGTGGCCGTGGCGGCGGCACCAGCGGCGGCACCTCACGCCTG
ATGTCCGCTTCCAGTCGAATGGGCTCCGGGTTCAGCAGCGCTGCCACGTC
CCGCCGGAGCCTGGGCCGCAGCCGCCGCCGGGGGGGGGGGGAGGCCGCGG
CCTCCTCGCGCAGCGTCCTGCTAGCGGAAGGGGAGAAGGAGTCGCCCCGC
CCCGACGTGGTGGAGGACGCCCATCGCCGGCTGTACCCCGCCTCCCGCAT
CAACGGTGAGGGTGATGGCGAGGACGAGCCCGCGGCGGAGCCTGGGATGA
GCGCGAGCGCTGTCCTCGGGACTCAGGCTGGGGCGGGGATGGGTGGCGTG
CGTGGGTCAAAGGCAGGGGCAACGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig106:105937..107312+

>mRNA_S-ischiensis_contig106.1869.1 ID=mRNA_S-ischiensis_contig106.1869.1|Name=mRNA_S-ischiensis_contig106.1869.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2748bp|location=Sequence derived from alignment at S-ischiensis_contig106:105937..107312+ (Schizocladia ischiensis KU_0333)
GGAGCTGCGGCGGCGGTGGGGGACGACAGCCCTCTGCAGCCAACCGACGC
ACCGGGGGGGGGCGACAAGAAGCACGAGGCGACCGTGACGGCGGCAGTGA
GCTCGGAGTCGCTGCCGAGCGCACGTGAGCCTGAGAGACACTTTGAGACC
CCTCAGGCAAGCCCTGATCTGCCAGCAGAGGCGGCACGGTCGCCACAGGC
CAGCGCCCCTCCCCCTCCGCAGCACGCGCAACCAACTGTCGGGAGCTTCC
CTGACAACGGTGCCCGCGGTGGTGGCGGGGCAGAAGAGGCAGGCCCGCCC
GTCCCACCGAAAGGCCCGGAGGAGCCGCCCAGTGCTGAGCTGCATGGGGT
GGCAGCGGCAGGCGAGCAGACACCTGAGCAGGCGGTGGCACCCGTTGCCG
CACCTACGGGGGCTGCTGCCAGCGGGGCAACCGTCATCGCAGCCAGAAGT
GGCGGCGATGGCGGTGGCAGAGACGGCGGGGGCGGCAACCCCGGTGGCCC
CAGACTGGGAAGGAGCACGAGGAGCCCCGGCGGCGGCGGCGGCGGCGGCG
GCGGCCCCAGCTGGAGAATCCCCGCAACAGGAAGAATAAGGAGCCCTGGC
GGGGGGCCGAGGCCCGACGACGCGGCGGCCCAGCCATCGTCCCGCGTGCG
CCCGGGCCGGCAGTCCATAACCTGCGCCCTGTGCCTGGTCAAGCCGACGT
CGACCGCGACGCTGTGCCGCGGGTGCGCGCGTGCCTGCGCGGCGGCGCTT
AAGCGCCTGCACGGGGCGCGGGCGGCGCGGCGGCTGCTGTGCCTGTACGG
GGCGGAGCATGGCATCCGTGAGAGGGACCCGGTGGAGGCAGAGGGCCCGG
CCGTGCGCCAGTGGGCGCGCCTGCACGACGACGACACCGACCGCGACCTC
TACTACAATGTTTACGCGGACGTCGCGCTGTGGAAGGGCGAGTTCGAGAT
ACGGGAACCGCCCCTGGTCGGCGCCGTCGCCGGCGGGGGCCGCCGGCGGT
ACGGCCGTGGTGGCCGTGGCGGCGGCACCAGCGGCGGCACCTCACGCCTG
ATGTCCGCTTCCAGTCGAATGGGCTCCGGGTTCAGCAGCGCTGCCACGTC
CCGCCGGAGCCTGGGCCGCAGCCGCCGCCGGGGGGGGGGGGAGGCCGCGG
CCTCCTCGCGCAGCGTCCTGCTAGCGGAAGGGGAGAAGGAGTCGCCCCGC
CCCGACGTGGTGGAGGACGCCCATCGCCGGCTGTACCCCGCCTCCCGCAT
CAACGGTGAGGGTGATGGCGAGGACGAGCCCGCGGCGGAGCCTGGGATGA
GCGCGAGCGCTGTCCTCGGGACTCAGGCTGGGGCGGGGATGGGTGGCGTG
CGTGGGTCAAAGGCAGGGGCAACGGGAGCTGCGGCGGCGGTGGGGGACGA
CAGCCCTCTGCAGCCAACCGACGCACCGGGGGGGGGCGACAAGAAGCACG
AGGCGACCGTGACGGCGGCAGTGAGCTCGGAGTCGCTGCCGAGCGCACGT
GAGCCTGAGAGACACTTTGAGACCCCTCAGGCAAGCCCTGATCTGCCAGC
AGAGGCGGCACGGTCGCCACAGGCCAGCGCCCCTCCCCCTCCGCAGCACG
CGCAACCAACTGTCGGGAGCTTCCCTGACAACGGTGCCCGCGGTGGTGGC
GGGGCAGAAGAGGCAGGCCCGCCCGTCCCACCGAAAGGCCCGGAGGAGCC
GCCCAGTGCTGAGCTGCATGGGGTGGCAGCGGCAGGCGAGCAGACACCTG
AGCAGGCGGTGGCACCCGTTGCCGCACCTACGGGGGCTGCTGCCAGCGGG
GCAACCGTCATCGCAGCCAGAAGTGGCGGCGATGGCGGTGGCAGAGACGG
CGGGGGCGGCAACCCCGGTGGCCCCAGACTGGGAAGGAGCACGAGGAGCC
CCGGCGGCGGCGGCGGCGGCGGCGGCGGCCCCAGCTGGAGAATCCCCGCA
ACAGGAAGAATAAGGAGCCCTGGCGGGGGGCCGAGGCCCGACGACGCGGC
GGCCCAGCCATCGTCCCGCGTGCGCCCGGGCCGGCAGTCCATAACCTGCG
CCCTGTGCCTGGTCAAGCCGACGTCGACCGCGACGCTGTGCCGCGGGTGC
GCGCGTGCCTGCGCGGCGGCGCTTAAGCGCCTGCACGGGGCGCGGGCGGC
GCGGCGGCTGCTGTGCCTGTACGGGGCGGAGCATGGCATCCGTGAGAGGG
ACCCGGTGGAGGCAGAGGGCCCGGCCGTGCGCCAGTGGGCGCGCCTGCAC
GACGACGACACCGACCGCGACCTCTACTACAATGTTTACGCGGACGTCGC
GCTGTGGAAGGGCGAGTTCGAGATACGGGAACCGCCCCTGGTCGGCGCCG
TCGCCGGCGGGGGCCGCCGGCGGTACGGCCGTGGTGGCCGTGGCGGCGGC
ACCAGCGGCGGCACCTCACGCCTGATGTCCGCTTCCAGTCGAATGGGCTC
CGGGTTCAGCAGCGCTGCCACGTCCCGCCGGAGCCTGGGCCGCAGCCGCC
GCCGGGGGGGGGGGGAGGCCGCGGCCTCCTCGCGCAGCGTCCTGCTAGCG
GAAGGGGAGAAGGAGTCGCCCCGCCCCGACGTGGTGGAGGACGCCCATCG
CCGGCTGTACCCCGCCTCCCGCATCAACGGTGAGGGTGATGGCGAGGACG
AGCCCGCGGCGGAGCCTGGGATGAGCGCGAGCGCTGTCCTCGGGACTCAG
GCTGGGGCGGGGATGGGTGGCGTGCGTGGGTCAAAGGCAGGGGCAACG
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