mRNA_S-ischiensis_contig106.1856.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig106.1856.1
Unique NamemRNA_S-ischiensis_contig106.1856.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig106.1856.1 vs. uniprot
Match: UPI001C36177D (Uncharacterized protein n=2 Tax=Manduca sexta TaxID=7130 RepID=UPI001C36177D)

HSP 1 Score: 92.4 bits (228), Expect = 8.840e-19
Identity = 57/164 (34.76%), Postives = 84/164 (51.22%), Query Frame = 1
Query:    4 ELWHRRPGHPSSQALRTLSLASASGISTGNYDSANCNICRSCKSRRASFQHVAWFRATSRLELVHVDVMGPMA-PSISGNRCVIQFTDDFLRMRFPYFLKSKSEAADALQ---RLIDDTALPNGLHIRRIRMDGARELVMGRFHDSCMSLGIQVEHSAPYCQSQ 483
            +LWHRR GH + +++  L    ASGI+        C  C   K  R  F   ++ RAT +L L+H D+ GPM+  S SG + ++ F DDF RM F YF+KSK E     +   RL+++      L ++ +R D  RE V  +F       GI+ + + PY   Q
Sbjct:  432 QLWHRRLGHLNKRSMDLLQRGMASGINYTPSQYTPCVACIEGKQSRLPFPKQSYNRATEKLGLIHSDLCGPMSVSSFSGAKYLLTFIDDFTRMTFGYFIKSKDEVLSVFKVFKRLVENET---NLKMKMLRTDNGREYVNKQFQSFLQEHGIKHQTTIPYSPQQ 592          
BLAST of mRNA_S-ischiensis_contig106.1856.1 vs. uniprot
Match: Q0J8A6_ORYSJ (Os08g0125300 protein n=3 Tax=Oryza sativa TaxID=4530 RepID=Q0J8A6_ORYSJ)

HSP 1 Score: 91.7 bits (226), Expect = 1.730e-18
Identity = 58/164 (35.37%), Postives = 85/164 (51.83%), Query Frame = 1
Query:    7 LWHRRPGHPSSQALRTLS-LASASGISTGNYDSANCNICRSCKSRRASFQHVAWFRATSRLELVHVDVMGPMAPS-ISGNRCVIQFTDDFLRMRFPYFLKSKSEAADALQR---LIDDTALPNGLHIRRIRMDGARELVMGRFHDSCMSLGIQVEHSAPYCQSQ 483
            LWH R GH + QA++ L+    A GI    + +  C  C   K  R  F   A FRA   LEL+H+D+ GP+ P+ ++GNR  +   DDF R  + + +K+K +A +A  +   L ++TA   G  I+ +R D   E + G F   C   GIQ   +APY   Q
Sbjct:  494 LWHARLGHVNFQAMKLLADKGMAGGIPAITHPNQLCQACLVAKQIRQPFPATANFRAEEPLELLHIDLCGPITPTTMAGNRYFMLIVDDFSRWMWMFVIKTKDQALEAFTKFKPLAENTA---GRRIKTLRSDRGGEFLSGEFAQLCEQAGIQRHLTAPYSPQQ 654          
BLAST of mRNA_S-ischiensis_contig106.1856.1 vs. uniprot
Match: A0A5N6Q192_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6Q192_9ASTR)

HSP 1 Score: 90.1 bits (222), Expect = 5.390e-18
Identity = 52/162 (32.10%), Postives = 85/162 (52.47%), Query Frame = 1
Query:    4 ELWHRRPGHPSSQALRTLSLAS-ASGISTGNYDSANCNICRSCKSRRASFQHVAWFRATSRLELVHVDVMGPMAP-SISGNRCVIQFTDDFLRMRFPYFLKSKSEAADALQRLIDDTALPNGLHIRRIRMDGARELVMGRFHDSCMSLGIQVEHSAPYCQSQ 483
            ++WHRR GH + ++LRT+   +   G+      +  C +C   K +R S  + + +RAT++L+L+H D+ GP+AP S SG R ++   DD+ R  + YFL  KSE  +  ++         GL I+ +R D   E     F + C S GI+ + +  Y   Q
Sbjct:  432 QIWHRRLGHINHKSLRTMQYKNLVHGLPKIVEQTKLCEVCHLGKQQRESVPNKSHWRATTKLQLIHTDLCGPIAPESPSGKRYIMVLIDDYSRKGWVYFLSKKSETFETFKKFKTRVENKTGLTIKGLRSDRGGEFTSTEFAEFCDSFGIKRQLTTAYTPQQ 593          
BLAST of mRNA_S-ischiensis_contig106.1856.1 vs. uniprot
Match: A0A8J6A195_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6A195_9ROSI)

HSP 1 Score: 89.4 bits (220), Expect = 1.080e-17
Identity = 56/162 (34.57%), Postives = 79/162 (48.77%), Query Frame = 1
Query:    4 ELWHRRPGHPSSQAL-RTLSLASASGISTGNYDSANCNICRSCKSRRASFQHVAWFRATSRLELVHVDVMGPM-APSISGNRCVIQFTDDFLRMRFPYFLKSKSEAADALQRLIDDTALPNGLHIRRIRMDGARELVMGRFHDSCMSLGIQVEHSAPYCQSQ 483
            +LWH++ GH + +++ R +S       +   Y    C +C+  K  R  F     +RA+S+LELVH DV GPM   S+SGNR  I F DD+ R  + YFLK KSE A    +         G  I+ IR D   E    +F   C   GI+ + +  Y   Q
Sbjct:  364 KLWHQKLGHTNFKSMARMVSKEMVENFTKTVYIEDVCEVCQMGKQARLPFPVNTTWRASSKLELVHTDVCGPMRTESLSGNRYFILFIDDYTRYCWIYFLKHKSEVAQVFIKFKAAVKTETGCKIKTIRSDNGTEYTSAQFQALCKDAGIKHQLTNVYTPQQ 525          
BLAST of mRNA_S-ischiensis_contig106.1856.1 vs. uniprot
Match: Q7XMW2_ORYSJ (OSJNBb0040D15.12 protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XMW2_ORYSJ)

HSP 1 Score: 88.2 bits (217), Expect = 2.660e-17
Identity = 57/164 (34.76%), Postives = 87/164 (53.05%), Query Frame = 1
Query:    7 LWHRRPGHPSSQALRTL-SLASASGISTGNYDSANCNICRSCKSRRASFQHVAWFRATSRLELVHVDVMGPMAPS-ISGNRCVIQFTDDFLRMRFPYFLKSKSEAADALQR---LIDDTALPNGLHIRRIRMDGARELVMGRFHDSCMSLGIQVEHSAPYCQSQ 483
            LWH R GH +  AL+ L      +G+   ++ +  C  C   K  R SF  +A +RA + LEL+H+D+ GP+ PS  +GNR  +   DDF R  + + +KSK +A  A ++   L ++TA   G  I+ +R D   E + G F   C + GI+   +APY   Q
Sbjct:  307 LWHARLGHVNFHALKLLVDKEMVAGVPAVHHPNQLCQACLVAKQVRQSFPGMANYRAEAPLELLHMDLCGPITPSTFAGNRYFMLIVDDFSRWMWVFVIKSKDQALAASEKFKPLAENTA---GRTIKTLRTDRGSEFLSGEFARVCDAAGIERHLTAPYSPQQ 467          
BLAST of mRNA_S-ischiensis_contig106.1856.1 vs. uniprot
Match: A0A8J6D2N4_9ROSI (Integrase catalytic domain-containing protein n=2 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6D2N4_9ROSI)

HSP 1 Score: 87.4 bits (215), Expect = 4.920e-17
Identity = 57/162 (35.19%), Postives = 77/162 (47.53%), Query Frame = 1
Query:    4 ELWHRRPGHPSSQALRTLSLASASGISTGNYDSAN-CNICRSCKSRRASFQHVAWFRATSRLELVHVDVMGPM-APSISGNRCVIQFTDDFLRMRFPYFLKSKSEAADALQRLIDDTALPNGLHIRRIRMDGARELVMGRFHDSCMSLGIQVEHSAPYCQSQ 483
            +LWH+R GH + +++  +         T    S + C +C+  K  R  F     +RATS+LELVH DV GPM   S+SGNR  I F DD  R  + YFLK KSE A    +         G  I+ IR D   E    +F   C   GI+ + +  Y   Q
Sbjct:  458 KLWHQRLGHANFKSMAQMVSKEMVENFTKTVQSEDVCEVCQMGKQARLPFPTNTTWRATSKLELVHSDVCGPMRTESLSGNRYFILFIDDCTRYCWIYFLKHKSEVAQVFIKFKAAVETETGCKIKTIRSDNGTEYTSAQFQSLCKDAGIKHQLTNVYTPQQ 619          
BLAST of mRNA_S-ischiensis_contig106.1856.1 vs. uniprot
Match: A0A8J5ZMU9_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5ZMU9_9ROSI)

HSP 1 Score: 87.4 bits (215), Expect = 5.310e-17
Identity = 54/162 (33.33%), Postives = 79/162 (48.77%), Query Frame = 1
Query:    4 ELWHRRPGHPSSQAL-RTLSLASASGISTGNYDSANCNICRSCKSRRASFQHVAWFRATSRLELVHVDVMGPM-APSISGNRCVIQFTDDFLRMRFPYFLKSKSEAADALQRLIDDTALPNGLHIRRIRMDGARELVMGRFHDSCMSLGIQVEHSAPYCQSQ 483
            +LWH+R GHP+ +++ + +S       +    +   C +C+  K  R  F     +RA+S+LELVH DV GPM   S+SGNR  I F DD+ R  + YFLK KSE A    +         G  ++ IR D   E    +F   C    I+ + +  Y   Q
Sbjct:  458 KLWHQRLGHPNFKSMAQMVSKEMVENFTKTVQNEDVCEVCQMGKQARLPFPSNTTWRASSKLELVHNDVCGPMRTESLSGNRYFILFIDDYTRYCWVYFLKHKSEVAQVFMKFKAAAETETGCKLKTIRSDNGAEYTSAQFQALCNDARIKHQLTNVYTPQQ 619          
BLAST of mRNA_S-ischiensis_contig106.1856.1 vs. uniprot
Match: A0A8J5ZMG2_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5ZMG2_9ROSI)

HSP 1 Score: 87.0 bits (214), Expect = 6.780e-17
Identity = 55/162 (33.95%), Postives = 78/162 (48.15%), Query Frame = 1
Query:    4 ELWHRRPGHPSSQALRTLSLASASGISTGNYDSAN-CNICRSCKSRRASFQHVAWFRATSRLELVHVDVMGPM-APSISGNRCVIQFTDDFLRMRFPYFLKSKSEAADALQRLIDDTALPNGLHIRRIRMDGARELVMGRFHDSCMSLGIQVEHSAPYCQSQ 483
            +LWH+R GH + +++  +         T    S + C +C+  K  R  F     +RA+S+LELVH DV GPM   S+SGN+  I F DD+ R  + YFLK KSE A    +         G  I+ IR D   E    +F   C   GI+ + +  Y   Q
Sbjct:  418 KLWHQRLGHANFKSMAQMVSKEMVENFTKTVQSEDVCEVCQMGKQARLPFPTNTTWRASSKLELVHSDVCGPMRTESLSGNKYFILFIDDYTRYCWVYFLKHKSEVAQVFIKFKAAVETETGCKIKTIRSDNGTEYTSAQFQSLCKDAGIKHQLTNVYTPQQ 579          
BLAST of mRNA_S-ischiensis_contig106.1856.1 vs. uniprot
Match: A0A8J5YZW8_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YZW8_9ROSI)

HSP 1 Score: 86.7 bits (213), Expect = 9.140e-17
Identity = 56/162 (34.57%), Postives = 77/162 (47.53%), Query Frame = 1
Query:    4 ELWHRRPGHPSSQALRTLSLASASGISTGNYDSAN-CNICRSCKSRRASFQHVAWFRATSRLELVHVDVMGPM-APSISGNRCVIQFTDDFLRMRFPYFLKSKSEAADALQRLIDDTALPNGLHIRRIRMDGARELVMGRFHDSCMSLGIQVEHSAPYCQSQ 483
            +LWH+R GH + +++  +         T    S + C +C+  K  R  F     +RA+S+LELVH DV GPM   S+SGNR  I F DD  R  + YFLK KSE A    +         G  I+ IR D   E    +F   C   GI+ + +  Y   Q
Sbjct:  119 KLWHQRLGHTNFKSMAQMVSKEMVENFTKTVQSEDVCEVCQMGKQARLPFPTNTTWRASSKLELVHTDVCGPMRTESLSGNRYFILFIDDCTRYCWIYFLKHKSEVAQVFIKFKAAVETETGCKIKTIRSDNGTEYTSAQFQSLCKDAGIKHQLTNVYTPQQ 280          
BLAST of mRNA_S-ischiensis_contig106.1856.1 vs. uniprot
Match: A0A8J5Y992_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5Y992_9ROSI)

HSP 1 Score: 86.7 bits (213), Expect = 9.460e-17
Identity = 55/162 (33.95%), Postives = 78/162 (48.15%), Query Frame = 1
Query:    4 ELWHRRPGHPSSQAL-RTLSLASASGISTGNYDSANCNICRSCKSRRASFQHVAWFRATSRLELVHVDVMGPM-APSISGNRCVIQFTDDFLRMRFPYFLKSKSEAADALQRLIDDTALPNGLHIRRIRMDGARELVMGRFHDSCMSLGIQVEHSAPYCQSQ 483
            +LWH+R GH + +++ R +S       +    +   C +C+  K  R  F     +RA+S+LELVH DV GPM   S+SGNR  I F +D  R  + YFLK KSE A    +         G  I+ IR D   E    +F   C   GI+ + +  Y   Q
Sbjct:  399 KLWHQRLGHANFKSMARMVSKEMVENFTKSVQNENVCEVCQMGKQARLPFPTNTTWRASSKLELVHSDVCGPMRTESLSGNRYFILFINDSTRYCWIYFLKHKSEVAQVFMKFKAAVETETGCKIKTIRSDNGTEYTSAQFQAICNDAGIKHQLTNVYTSQQ 560          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig106.1856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C36177D8.840e-1934.76Uncharacterized protein n=2 Tax=Manduca sexta TaxI... [more]
Q0J8A6_ORYSJ1.730e-1835.37Os08g0125300 protein n=3 Tax=Oryza sativa TaxID=45... [more]
A0A5N6Q192_9ASTR5.390e-1832.10Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A8J6A195_9ROSI1.080e-1734.57Integrase catalytic domain-containing protein n=1 ... [more]
Q7XMW2_ORYSJ2.660e-1734.76OSJNBb0040D15.12 protein n=1 Tax=Oryza sativa subs... [more]
A0A8J6D2N4_9ROSI4.920e-1735.19Integrase catalytic domain-containing protein n=2 ... [more]
A0A8J5ZMU9_9ROSI5.310e-1733.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5ZMG2_9ROSI6.780e-1733.95Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5YZW8_9ROSI9.140e-1734.57Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5Y992_9ROSI9.460e-1733.95Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig106contigS-ischiensis_contig106:28502..28984 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score100.1
Seed ortholog evalue9.7e-19
Seed eggNOG ortholog15368.BRADI1G43550.1
KEGG koko:K20093
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size483
Cds size483
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815567.2434478-CDS-S-ischiensis_contig106:28501..289841622815567.2434478-CDS-S-ischiensis_contig106:28501..28984Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 28502..28984 -
1695739774.6835318-CDS-S-ischiensis_contig106:28501..289841695739774.6835318-CDS-S-ischiensis_contig106:28501..28984Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 28502..28984 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig106.1856.1prot_S-ischiensis_contig106.1856.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig106 28502..28984 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig106.1856.1

>prot_S-ischiensis_contig106.1856.1 ID=prot_S-ischiensis_contig106.1856.1|Name=mRNA_S-ischiensis_contig106.1856.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=161bp
GELWHRRPGHPSSQALRTLSLASASGISTGNYDSANCNICRSCKSRRASF
QHVAWFRATSRLELVHVDVMGPMAPSISGNRCVIQFTDDFLRMRFPYFLK
SKSEAADALQRLIDDTALPNGLHIRRIRMDGARELVMGRFHDSCMSLGIQ
VEHSAPYCQSQ
back to top

mRNA from alignment at S-ischiensis_contig106:28502..28984-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig106.1856.1 ID=mRNA_S-ischiensis_contig106.1856.1|Name=mRNA_S-ischiensis_contig106.1856.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=483bp|location=Sequence derived from alignment at S-ischiensis_contig106:28502..28984- (Schizocladia ischiensis KU_0333)
GGTGAGCTTTGGCATCGCCGGCCGGGCCACCCCAGTAGCCAAGCGCTGCG GACTCTGTCCCTCGCTTCGGCCAGCGGCATTTCTACGGGCAACTACGACT CAGCAAATTGTAACATCTGTAGGTCGTGTAAGAGTAGACGCGCTTCCTTC CAACACGTAGCTTGGTTTCGAGCCACCTCTCGGCTGGAACTAGTGCACGT TGACGTGATGGGGCCCATGGCCCCGTCCATATCAGGGAATCGTTGCGTGA TCCAATTCACCGATGATTTCTTGCGTATGAGATTTCCATATTTTCTCAAA TCGAAATCGGAAGCTGCCGATGCCTTACAACGTCTTATAGACGACACCGC GCTGCCTAACGGGTTGCACATCCGACGCATCCGCATGGATGGTGCAAGGG AACTCGTTATGGGTCGGTTCCACGACTCGTGTATGTCCCTTGGGATACAG GTGGAGCATAGTGCTCCGTACTGCCAATCACAG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig106:28502..28984-

>mRNA_S-ischiensis_contig106.1856.1 ID=mRNA_S-ischiensis_contig106.1856.1|Name=mRNA_S-ischiensis_contig106.1856.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=966bp|location=Sequence derived from alignment at S-ischiensis_contig106:28502..28984- (Schizocladia ischiensis KU_0333)
GGTGAGCTTTGGCATCGCCGGCCGGGCCACCCCAGTAGCCAAGCGCTGCG
GACTCTGTCCCTCGCTTCGGCCAGCGGCATTTCTACGGGCAACTACGACT
CAGCAAATTGTAACATCTGTAGGTCGTGTAAGAGTAGACGCGCTTCCTTC
CAACACGTAGCTTGGTTTCGAGCCACCTCTCGGCTGGAACTAGTGCACGT
TGACGTGATGGGGCCCATGGCCCCGTCCATATCAGGGAATCGTTGCGTGA
TCCAATTCACCGATGATTTCTTGCGTATGAGATTTCCATATTTTCTCAAA
TCGAAATCGGAAGCTGCCGATGCCTTACAACGTCTTATAGACGACACCGC
GCTGCCTAACGGGTTGCACATCCGACGCATCCGCATGGATGGTGCAAGGG
AACTCGTTATGGGTCGGTTCCACGACTCGTGTATGTCCCTTGGGATACAG
GTGGAGCATAGTGCTCCGTACTGCCAATCACAGGGTGAGCTTTGGCATCG
CCGGCCGGGCCACCCCAGTAGCCAAGCGCTGCGGACTCTGTCCCTCGCTT
CGGCCAGCGGCATTTCTACGGGCAACTACGACTCAGCAAATTGTAACATC
TGTAGGTCGTGTAAGAGTAGACGCGCTTCCTTCCAACACGTAGCTTGGTT
TCGAGCCACCTCTCGGCTGGAACTAGTGCACGTTGACGTGATGGGGCCCA
TGGCCCCGTCCATATCAGGGAATCGTTGCGTGATCCAATTCACCGATGAT
TTCTTGCGTATGAGATTTCCATATTTTCTCAAATCGAAATCGGAAGCTGC
CGATGCCTTACAACGTCTTATAGACGACACCGCGCTGCCTAACGGGTTGC
ACATCCGACGCATCCGCATGGATGGTGCAAGGGAACTCGTTATGGGTCGG
TTCCACGACTCGTGTATGTCCCTTGGGATACAGGTGGAGCATAGTGCTCC
GTACTGCCAATCACAG
back to top