mRNA_S-ischiensis_contig105.1851.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig105.1851.1
Unique NamemRNA_S-ischiensis_contig105.1851.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig105.1851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig105contigS-ischiensis_contig105:232946..233808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size865
Cds size861
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815563.9406025-CDS-S-ischiensis_contig105:232945..2338061622815563.9406025-CDS-S-ischiensis_contig105:232945..233806Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 232946..233806 +
1695739772.7103703-CDS-S-ischiensis_contig105:232945..2338061695739772.7103703-CDS-S-ischiensis_contig105:232945..233806Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 232946..233806 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig105.1851.1prot_S-ischiensis_contig105.1851.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig105 232946..233806 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig105.1851.1

>prot_S-ischiensis_contig105.1851.1 ID=prot_S-ischiensis_contig105.1851.1|Name=mRNA_S-ischiensis_contig105.1851.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=287bp
VGVALAQGPRGPPQGCVQGETLFNFDNLSISGNGDTSLSTIPEASQPQPR
RQIFVGQDAAAMERVSRGTRYTRSSSGGGSSSSGSSNNSPVVRTRTPPGT
AVALQAPVPAPPGFSLAYLGHVRRPTPVSSPARDLAYGGPGQHQRQEPLL
QPSQQAVRHGVGPPTGASEGEALLDKALATWVEDFIEQGGGVVAMSGLTT
AFERSNPCAFALLVARYGGLQEFLSQFPGRFMFGVAKATRELVVLLPTAV
AGAPGADRVPRGGQVSVEAPGHAAQHEGHQRRSQGYR
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mRNA from alignment at S-ischiensis_contig105:232946..233808+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig105.1851.1 ID=mRNA_S-ischiensis_contig105.1851.1|Name=mRNA_S-ischiensis_contig105.1851.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=863bp|location=Sequence derived from alignment at S-ischiensis_contig105:232946..233808+ (Schizocladia ischiensis KU_0333)
GTGGGCGTGGCTTTGGCACAAGGCCCTCGTGGTCCCCCGCAGGGGTGTGT
GCAGGGCGAGACTCTCTTCAACTTCGACAACCTTTCCATCAGTGGGAATG
GGGACACTTCCCTCTCCACCATCCCCGAGGCATCCCAGCCCCAGCCACGC
AGGCAGATATTTGTGGGCCAGGACGCAGCAGCCATGGAGCGTGTCTCACG
AGGGACCCGCTACACGAGAAGCAGCAGTGGCGGCGGCAGCAGCAGCAGCG
GTAGCAGCAACAACAGCCCAGTTGTGCGGACTCGCACACCTCCCGGGACA
GCTGTTGCGCTTCAAGCCCCTGTGCCAGCTCCTCCAGGGTTCTCCCTGGC
TTACCTTGGCCACGTCAGGCGGCCAACCCCGGTGTCATCACCTGCCCGGG
ACTTGGCTTACGGGGGGCCCGGCCAGCACCAGCGGCAGGAGCCGCTGCTG
CAGCCCAGCCAGCAGGCAGTGCGGCATGGTGTAGGCCCGCCAACGGGCGC
GTCTGAGGGCGAGGCCCTCCTGGACAAGGCCCTGGCCACCTGGGTGGAGG
ATTTCATCGAGCAGGGAGGCGGGGTGGTGGCAATGTCCGGCCTCACTACA
GCGTTTGAGCGCTCCAATCCTTGTGCGTTTGCCCTGTTGGTGGCGCGCTA
CGGCGGGCTGCAGGAGTTCCTGTCGCAGTTCCCGGGTCGCTTCATGTTTG
GGGTGGCCAAGGCGACCCGTGAGCTGGTGGTGCTGCTGCCCACGGCGGTG
GCTGGAGCGCCAGGAGCGGACCGGGTGCCACGAGGAGGGCAGGTGTCTGT
GGAGGCCCCTGGACACGCGGCGCAGCACGAGGGTCACCAAAGGCGCAGCC
AGGGGTACCGGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig105:232946..233808+

>mRNA_S-ischiensis_contig105.1851.1 ID=mRNA_S-ischiensis_contig105.1851.1|Name=mRNA_S-ischiensis_contig105.1851.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1722bp|location=Sequence derived from alignment at S-ischiensis_contig105:232946..233808+ (Schizocladia ischiensis KU_0333)
GTGGGCGTGGCTTTGGCACAAGGCCCTCGTGGTCCCCCGCAGGGGTGTGT
GCAGGGCGAGACTCTCTTCAACTTCGACAACCTTTCCATCAGTGGGAATG
GGGACACTTCCCTCTCCACCATCCCCGAGGCATCCCAGCCCCAGCCACGC
AGGCAGATATTTGTGGGCCAGGACGCAGCAGCCATGGAGCGTGTCTCACG
AGGGACCCGCTACACGAGAAGCAGCAGTGGCGGCGGCAGCAGCAGCAGCG
GTAGCAGCAACAACAGCCCAGTTGTGCGGACTCGCACACCTCCCGGGACA
GCTGTTGCGCTTCAAGCCCCTGTGCCAGCTCCTCCAGGGTTCTCCCTGGC
TTACCTTGGCCACGTCAGGCGGCCAACCCCGGTGTCATCACCTGCCCGGG
ACTTGGCTTACGGGGGGCCCGGCCAGCACCAGCGGCAGGAGCCGCTGCTG
CAGCCCAGCCAGCAGGCAGTGCGGCATGGTGTAGGCCCGCCAACGGGCGC
GTCTGAGGGCGAGGCCCTCCTGGACAAGGCCCTGGCCACCTGGGTGGAGG
ATTTCATCGAGCAGGGAGGCGGGGTGGTGGCAATGTCCGGCCTCACTACA
GCGTTTGAGCGCTCCAATCCTTGTGCGTTTGCCCTGTTGGTGGCGCGCTA
CGGCGGGCTGCAGGAGTTCCTGTCGCAGTTCCCGGGTCGCTTCATGTTTG
GGGTGGCCAAGGCGACCCGTGAGCTGGTGGTGCTGCTGCCCACGGCGGTG
GCTGGAGCGCCAGGAGCGGACCGGGTGCCACGAGGAGGGCAGGTGTCTGT
GGAGGCCCCTGGACACGCGGCGCAGCACGAGGGTCACCAAAGGCGCAGCC
AGGGGTACCGGGTGGGCGTGGCTTTGGCACAAGGCCCTCGTGGTCCCCCG
CAGGGGTGTGTGCAGGGCGAGACTCTCTTCAACTTCGACAACCTTTCCAT
CAGTGGGAATGGGGACACTTCCCTCTCCACCATCCCCGAGGCATCCCAGC
CCCAGCCACGCAGGCAGATATTTGTGGGCCAGGACGCAGCAGCCATGGAG
CGTGTCTCACGAGGGACCCGCTACACGAGAAGCAGCAGTGGCGGCGGCAG
CAGCAGCAGCGGTAGCAGCAACAACAGCCCAGTTGTGCGGACTCGCACAC
CTCCCGGGACAGCTGTTGCGCTTCAAGCCCCTGTGCCAGCTCCTCCAGGG
TTCTCCCTGGCTTACCTTGGCCACGTCAGGCGGCCAACCCCGGTGTCATC
ACCTGCCCGGGACTTGGCTTACGGGGGGCCCGGCCAGCACCAGCGGCAGG
AGCCGCTGCTGCAGCCCAGCCAGCAGGCAGTGCGGCATGGTGTAGGCCCG
CCAACGGGCGCGTCTGAGGGCGAGGCCCTCCTGGACAAGGCCCTGGCCAC
CTGGGTGGAGGATTTCATCGAGCAGGGAGGCGGGGTGGTGGCAATGTCCG
GCCTCACTACAGCGTTTGAGCGCTCCAATCCTTGTGCGTTTGCCCTGTTG
GTGGCGCGCTACGGCGGGCTGCAGGAGTTCCTGTCGCAGTTCCCGGGTCG
CTTCATGTTTGGGGTGGCCAAGGCGACCCGTGAGCTGGTGGTGCTGCTGC
CCACGGCGGTGGCTGGAGCGCCAGGAGCGGACCGGGTGCCACGAGGAGGG
CAGGTGTCTGTGGAGGCCCCTGGACACGCGGCGCAGCACGAGGGTCACCA
AAGGCGCAGCCAGGGGTACCGG
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