mRNA_S-ischiensis_contig105.1850.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig105.1850.1
Unique NamemRNA_S-ischiensis_contig105.1850.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig105.1850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig105contigS-ischiensis_contig105:232434..232885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size318
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815563.3439102-CDS-S-ischiensis_contig105:232433..2324911622815563.3439102-CDS-S-ischiensis_contig105:232433..232491Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 232434..232491 +
1695739772.4803407-CDS-S-ischiensis_contig105:232433..2324911695739772.4803407-CDS-S-ischiensis_contig105:232433..232491Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 232434..232491 +
1622815563.3580174-CDS-S-ischiensis_contig105:232627..2328841622815563.3580174-CDS-S-ischiensis_contig105:232627..232884Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 232628..232884 +
1695739772.4890492-CDS-S-ischiensis_contig105:232627..2328841695739772.4890492-CDS-S-ischiensis_contig105:232627..232884Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 232628..232884 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig105.1850.1prot_S-ischiensis_contig105.1850.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig105 232434..232884 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig105.1850.1

>prot_S-ischiensis_contig105.1850.1 ID=prot_S-ischiensis_contig105.1850.1|Name=mRNA_S-ischiensis_contig105.1850.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=105bp
RSITFGFTQSWRCGSPSDWECEMKTARASTIDHIHNPFSLGPAYSLFGGA
MSTRAALPAGHATAPAEKRSPEEGVSTGSVDSMSSVTSSSSWSSLSGSPV
VGPSQ
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mRNA from alignment at S-ischiensis_contig105:232434..232885+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig105.1850.1 ID=mRNA_S-ischiensis_contig105.1850.1|Name=mRNA_S-ischiensis_contig105.1850.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=452bp|location=Sequence derived from alignment at S-ischiensis_contig105:232434..232885+ (Schizocladia ischiensis KU_0333)
CGGAGCATTACCTTTGGGTTCACTCAGTCTTGGCGGTGTGGGAGCCCATC
TGACTGGGGTGAGTGAGCCCGATGGGGGCGGCACGTTTGCTGGGCGTGTG
CGAGGGCTGGAGGAATCTGCGTCTTCTGTAGCCCGTGAGCACTTGTTTTG
CTGTTCGAAAGGTTGAACCGATCCTTTTCCCCGCGTCTTCGCAGAGTGCG
AGATGAAGACGGCGCGCGCCTCCACCATTGACCACATCCACAACCCCTTC
AGCCTGGGCCCCGCCTACTCTCTCTTTGGGGGAGCCATGTCCACCCGGGC
AGCGCTGCCGGCTGGGCACGCCACCGCGCCTGCCGAGAAGCGCTCGCCCG
AGGAGGGGGTTTCCACAGGCTCGGTGGACTCGATGAGCAGCGTAACATCG
AGTTCATCTTGGTCCTCCCTGTCGGGCTCGCCCGTGGTGGGGCCGTCCCA
GG
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Coding sequence (CDS) from alignment at S-ischiensis_contig105:232434..232885+

>mRNA_S-ischiensis_contig105.1850.1 ID=mRNA_S-ischiensis_contig105.1850.1|Name=mRNA_S-ischiensis_contig105.1850.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=630bp|location=Sequence derived from alignment at S-ischiensis_contig105:232434..232885+ (Schizocladia ischiensis KU_0333)
CGGAGCATTACCTTTGGGTTCACTCAGTCTTGGCGGTGTGGGAGCCCATC
TGACTGGGCGGAGCATTACCTTTGGGTTCACTCAGTCTTGGCGGTGTGGG
AGCCCATCTGACTGGGAGTGCGAGATGAAGACGGCGCGCGCCTCCACCAT
TGACCACATCCACAACCCCTTCAGCCTGGGCCCCGCCTACTCTCTCTTTG
GGGGAGCCATGTCCACCCGGGCAGCGCTGCCGGCTGGGCACGCCACCGCG
CCTGCCGAGAAGCGCTCGCCCGAGGAGGGGGTTTCCACAGGCTCGGTGGA
CTCGATGAGCAGCGTAACATCGAGTTCATCTTGGTCCTCCCTGTCGGGCT
CGCCCGTGGTGGGGCCGTCCCAGAGTGCGAGATGAAGACGGCGCGCGCCT
CCACCATTGACCACATCCACAACCCCTTCAGCCTGGGCCCCGCCTACTCT
CTCTTTGGGGGAGCCATGTCCACCCGGGCAGCGCTGCCGGCTGGGCACGC
CACCGCGCCTGCCGAGAAGCGCTCGCCCGAGGAGGGGGTTTCCACAGGCT
CGGTGGACTCGATGAGCAGCGTAACATCGAGTTCATCTTGGTCCTCCCTG
TCGGGCTCGCCCGTGGTGGGGCCGTCCCAG
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