mRNA_S-ischiensis_contig105.1843.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig105.1843.1
Unique NamemRNA_S-ischiensis_contig105.1843.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig105.1843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig105contigS-ischiensis_contig105:173710..174459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size473
Cds size471
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig105.1843.1prot_S-ischiensis_contig105.1843.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig105 173710..174457 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815563.2217827-CDS-S-ischiensis_contig105:173709..1738291622815563.2217827-CDS-S-ischiensis_contig105:173709..173829Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 173710..173829 +
1695739772.4130788-CDS-S-ischiensis_contig105:173709..1738291695739772.4130788-CDS-S-ischiensis_contig105:173709..173829Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 173710..173829 +
1622815563.237954-CDS-S-ischiensis_contig105:173993..1740801622815563.237954-CDS-S-ischiensis_contig105:173993..174080Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 173994..174080 +
1695739772.4247508-CDS-S-ischiensis_contig105:173993..1740801695739772.4247508-CDS-S-ischiensis_contig105:173993..174080Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 173994..174080 +
1622815563.25061-CDS-S-ischiensis_contig105:174193..1744571622815563.25061-CDS-S-ischiensis_contig105:174193..174457Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 174194..174457 +
1695739772.435954-CDS-S-ischiensis_contig105:174193..1744571695739772.435954-CDS-S-ischiensis_contig105:174193..174457Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 174194..174457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig105.1843.1

>prot_S-ischiensis_contig105.1843.1 ID=prot_S-ischiensis_contig105.1843.1|Name=mRNA_S-ischiensis_contig105.1843.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=157bp
GAISRTRALYPFCWSTPVQWDRIVCPPWVLRMSTSAPRSQDDDPFAGLLQ
DIQLGGQDMDLAAERQRAGERRAQNDQFLADMSSFLHGIESQVDYMAATG
AQGGPDGRGNETAVAPREGHLTARLDGGLGQVPSPPPASSSLMQATGGGG
LAQPLGH
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mRNA from alignment at S-ischiensis_contig105:173710..174459+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig105.1843.1 ID=mRNA_S-ischiensis_contig105.1843.1|Name=mRNA_S-ischiensis_contig105.1843.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=750bp|location=Sequence derived from alignment at S-ischiensis_contig105:173710..174459+ (Schizocladia ischiensis KU_0333)
GGGGCTATATCTCGCACGCGTGCGTTGTACCCTTTTTGTTGGAGCACCCC
AGTCCAGTGGGATAGAATTGTTTGTCCCCCCTGGGTTCTAAGGATGTCGA
CGTCTGCCCCAAGATCGCAAGTGAGTTATGTCGTGGGATCGAAAGATTCG
ATTCAAAACGCTAGTAATGCAGTCAAGCGCGGCCGGGACCAAGTCCCACG
AGATTGAATCCCCCTGATGCCACCCAACTCTTTTTGCCCTCGCGCCACCC
TCCCTTGCTCACGATTTTGTTGTTTTCGGAACAGGATGATGATCCATTCG
CGGGGCTGCTCCAGGACATACAACTTGGTGGTCAAGACATGGATTTGGCA
GCGGAGAGGCAACGAGCAGGGGTGAGCAAGTCGATCGTCGGTAGACCGTT
TGTGCAGCGCCGGCCTTAGATGGTGCCGCGATTATGTGCAACCGATTTTC
TCTTACAATTCCTTGCACTGCTTGTCCATGGCAGGAGCGACGAGCTCAAA
ACGACCAGTTCCTTGCAGACATGAGCTCGTTCTTGCATGGCATTGAGAGC
CAGGTGGATTATATGGCGGCTACTGGAGCCCAGGGCGGCCCAGATGGGCG
GGGAAACGAGACAGCAGTAGCCCCCCGGGAGGGACACTTGACAGCGAGAC
TTGACGGAGGATTGGGTCAAGTCCCCTCTCCACCTCCAGCGTCATCCTCA
CTCATGCAGGCGACTGGAGGTGGGGGCCTTGCGCAGCCCCTGGGGCATGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig105:173710..174459+

>mRNA_S-ischiensis_contig105.1843.1 ID=mRNA_S-ischiensis_contig105.1843.1|Name=mRNA_S-ischiensis_contig105.1843.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=942bp|location=Sequence derived from alignment at S-ischiensis_contig105:173710..174459+ (Schizocladia ischiensis KU_0333)
GGGGCTATATCTCGCACGCGTGCGTTGTACCCTTTTTGTTGGAGCACCCC
AGTCCAGTGGGATAGAATTGTTTGTCCCCCCTGGGTTCTAAGGATGTCGA
CGTCTGCCCCAAGATCGCAAGGGGCTATATCTCGCACGCGTGCGTTGTAC
CCTTTTTGTTGGAGCACCCCAGTCCAGTGGGATAGAATTGTTTGTCCCCC
CTGGGTTCTAAGGATGTCGACGTCTGCCCCAAGATCGCAAGATGATGATC
CATTCGCGGGGCTGCTCCAGGACATACAACTTGGTGGTCAAGACATGGAT
TTGGCAGCGGAGAGGCAACGAGCAGGGGATGATGATCCATTCGCGGGGCT
GCTCCAGGACATACAACTTGGTGGTCAAGACATGGATTTGGCAGCGGAGA
GGCAACGAGCAGGGGAGCGACGAGCTCAAAACGACCAGTTCCTTGCAGAC
ATGAGCTCGTTCTTGCATGGCATTGAGAGCCAGGTGGATTATATGGCGGC
TACTGGAGCCCAGGGCGGCCCAGATGGGCGGGGAAACGAGACAGCAGTAG
CCCCCCGGGAGGGACACTTGACAGCGAGACTTGACGGAGGATTGGGTCAA
GTCCCCTCTCCACCTCCAGCGTCATCCTCACTCATGCAGGCGACTGGAGG
TGGGGGCCTTGCGCAGCCCCTGGGGCATGAGCGACGAGCTCAAAACGACC
AGTTCCTTGCAGACATGAGCTCGTTCTTGCATGGCATTGAGAGCCAGGTG
GATTATATGGCGGCTACTGGAGCCCAGGGCGGCCCAGATGGGCGGGGAAA
CGAGACAGCAGTAGCCCCCCGGGAGGGACACTTGACAGCGAGACTTGACG
GAGGATTGGGTCAAGTCCCCTCTCCACCTCCAGCGTCATCCTCACTCATG
CAGGCGACTGGAGGTGGGGGCCTTGCGCAGCCCCTGGGGCAT
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