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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | no signal peptide or anchor |
| Exons | 3 |
| Model size | 225 |
| Cds size | 165 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815564.908158-CDS-S-ischiensis_contig105:133075..133117 | 1622815564.908158-CDS-S-ischiensis_contig105:133075..133117 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig105 133076..133117 - |
| 1695739773.2282488-CDS-S-ischiensis_contig105:133075..133117 | 1695739773.2282488-CDS-S-ischiensis_contig105:133075..133117 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig105 133076..133117 - |
| 1622815564.9190364-CDS-S-ischiensis_contig105:134520..134643 | 1622815564.9190364-CDS-S-ischiensis_contig105:134520..134643 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig105 134521..134643 - |
| 1695739773.2365985-CDS-S-ischiensis_contig105:134520..134643 | 1695739773.2365985-CDS-S-ischiensis_contig105:134520..134643 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig105 134521..134643 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815564.9318562-UTR-S-ischiensis_contig105:135009..135069 | 1622815564.9318562-UTR-S-ischiensis_contig105:135009..135069 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig105 135010..135069 - |
| 1695739773.2449782-UTR-S-ischiensis_contig105:135009..135069 | 1695739773.2449782-UTR-S-ischiensis_contig105:135009..135069 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig105 135010..135069 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig105.1838.1 >prot_S-ischiensis_contig105.1838.1 ID=prot_S-ischiensis_contig105.1838.1|Name=mRNA_S-ischiensis_contig105.1838.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=55bp
MADPRADRPGDMPRLGPTWSRGGGSFMPPKRTVSSENVLEGSKGAGMGTG
TALGA back to topmRNA from alignment at S-ischiensis_contig105:133076..135069- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig105.1838.1 ID=mRNA_S-ischiensis_contig105.1838.1|Name=mRNA_S-ischiensis_contig105.1838.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1994bp|location=Sequence derived from alignment at S-ischiensis_contig105:133076..135069- (Schizocladia ischiensis KU_0333)
TGACTCGCCAACGAGGACGGGACTTGCTTGAGGCCTTTCTGCCCGAGGAG
CGACGCCAAGGTCAGGCGGTGCTACGGCGATTATGGCGCTCAGCTCGTGT
TAGCCGCGTATTCGGGCACTTGGTACAAGAGCTTTTGGGCCCGGGGGCAG
GTCTCGTGAGAGGATGTGTGGGGCGTGGGTGCCTGGTGGCTCTGTGGTTG
TGAGCGTTTTGTCCACATCTGCCGTCCCAGTTCATCGGATTGTTGTGAGG
ATTTGGCCGCACGATCTAGCCGATTCCTGTCGTAAATGTGCGGCAACAAA
TCCCTTTGGTTGTCCACTCAAAGACCACGACCCGACCAGCGCATGACTTC
CTGTGCCGAGGACACGGGTTGATGCTCATGAATGTCTCTGACCCTTCCCA
CCTCCTCTTCTTAACCTCCCTTTCAGATGGCGGACCCAAGGGCCGACCGC
CCGGGTGACATGCCTCGGCTGGGCCCTACATGGAGCCGTGGGGGTGGGTC
TTTCATGCCTCCCAAGCGGACTGTATCTTCGGAGAACGTGCTAGAAGGGG
TAAGTAATAGATCTCCGAGATTAAGGGTTTTCGAGTGCTTGTTGGACTGA
TGGGAGTGTGGTGCTCGGTGCTCTGCTCATTGGGGCGCCGTTGAAGTCCT
CTTCTTGTTTTTCGGTCGGGCAGAACAACAACCGGGCCAATACAGCCCAA
GCCACATGCTTCAGTTCATGTACCTCATCAAGCGCTTGATGTTTGGGAGG
CGATACAAGGCCGTGTTTCCTCGACACTTGCCGTTTTCATCTACGTATAT
CTTAGCCGGTCAACGGCAAACTGCTATTTGCTGTATGTACGAGTAGTAGT
TGTACAGAGTACAGCGAAGAAGATGAAACCTGGACTCGTCCAAGCAGCAA
TTGCGAGATAAGTAGGCCATATTTCAGTTTCAAGCCCGGCAGTATGTGTG
TGTGTGTGTCTGTTTTGCATTGTGTCCTTGGCTGTGCCAGCTCCGCACCC
GCAAGACAGCCCTCACTCCCCAACCCCAATCCAACCCACTGTTCTTTAAA
CTTGGCCATGGGTTCTGGGATGACACTCAAACTGGTGGTCCCACGCACGA
ATTACTTGTGTCCGATAGAGACTGAGCGTGACTGCTGTACTCCAGCAGCC
CCCCCCGCGGCACCCCAGCGGGGCCTGCCTGCACTACTGTGCAGTACCGT
ACGCAGTACAGCAGTATCCCTCTGCATGTACAGTACATACATACTCGAAG
TATTTACAGTAGTATGCGTGACATACCCCACTCTGGTAAACCAAGTGAGG
TTTTCTCCCGCAGCGGTGCCCCCCCCATGACACATGCAAGCCAGGCTCAG
ATGTGAGTTGGGCCCTCAAGTGTGTTGCCCCCTTTTCTGTGTTGGTTTGT
TTGCCCCATCATGGTGCGGCATGTGAGCGTGGGACCCTGGGGAGGGTAGC
TCTTGAGAAGGATTTGGTCTGTCGTGGTTGTCTGTGAGTCCCAACGATTT
TTTGTTTTTTATGAATCGAAGGAGGATGTTGGGAGGTGAAAGCCAAGAAA
ATGATGAGATTGGTTTTATTTTCTTGATATATAGGACCCATCACGGGTCT
TTGTATTTTTTTCCATACATCTCTACTGTGATGCATCAATGATGAAAGTA
GAACATGGACCGCACTTCCCTTTTGTTTCTTCACTACAAGACAGTAGATT
GCATTTCTGTAAGTGTAGCAGTATGTGTCTGTACTTACGGCAGGCCAAAA
CTTTTAATACAGTAGGCCCAAAACTTTTCAGGCAGCCAAGTTTATGTAAA
GGCGAGCAGCAAACACTGCTTATTTTCTCTACCTCCCCCACTCCCTCGCC
GGCCACCTCCCCGGGCCCTGCGGTTCCACCATCACCACCCACGTGTGGGC
GCGACTTCGATCGCTGCCATAACGCTCGCTCCCCGTGCAAAACACAACGT
AGTCGAAGGGCGCTGGCATGGGGACAGGGACAGCACTGGGTGCG back to topCoding sequence (CDS) from alignment at S-ischiensis_contig105:133076..135069- >mRNA_S-ischiensis_contig105.1838.1 ID=mRNA_S-ischiensis_contig105.1838.1|Name=mRNA_S-ischiensis_contig105.1838.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=330bp|location=Sequence derived from alignment at S-ischiensis_contig105:133076..135069- (Schizocladia ischiensis KU_0333)
ATGGCGGACCCAAGGGCCGACCGCCCGGGTGACATGCCTCGGCTGGGCCC
TACATGGAGCCGTGGGGGTGGGTCTTTCATGCCTCCCAAGCGGACTGTAT
CTTCGGAGAACGTGCTAGAAGGGATGGCGGACCCAAGGGCCGACCGCCCG
GGTGACATGCCTCGGCTGGGCCCTACATGGAGCCGTGGGGGTGGGTCTTT
CATGCCTCCCAAGCGGACTGTATCTTCGGAGAACGTGCTAGAAGGGTCGA
AGGGCGCTGGCATGGGGACAGGGACAGCACTGGGTGCGTCGAAGGGCGCT
GGCATGGGGACAGGGACAGCACTGGGTGCG back to top
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