mRNA_S-ischiensis_contig105.1837.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig105.1837.1
Unique NamemRNA_S-ischiensis_contig105.1837.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig105.1837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig105contigS-ischiensis_contig105:128507..130314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size274
Cds size273
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig105.1837.1prot_S-ischiensis_contig105.1837.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig105 128507..130314 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815563.1492987-CDS-S-ischiensis_contig105:128506..1285811622815563.1492987-CDS-S-ischiensis_contig105:128506..128581Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 128507..128581 -
1695739772.356929-CDS-S-ischiensis_contig105:128506..1285811695739772.356929-CDS-S-ischiensis_contig105:128506..128581Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 128507..128581 -
1622815563.1623836-CDS-S-ischiensis_contig105:129235..1293091622815563.1623836-CDS-S-ischiensis_contig105:129235..129309Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 129236..129309 -
1695739772.3884554-CDS-S-ischiensis_contig105:129235..1293091695739772.3884554-CDS-S-ischiensis_contig105:129235..129309Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 129236..129309 -
1622815563.1822932-CDS-S-ischiensis_contig105:130190..1303141622815563.1822932-CDS-S-ischiensis_contig105:130190..130314Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 130191..130314 -
1695739772.3990095-CDS-S-ischiensis_contig105:130190..1303141695739772.3990095-CDS-S-ischiensis_contig105:130190..130314Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 130191..130314 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig105.1837.1

>prot_S-ischiensis_contig105.1837.1 ID=prot_S-ischiensis_contig105.1837.1|Name=mRNA_S-ischiensis_contig105.1837.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=91bp
PAGRGLAALAGSLHGSRQLPEDDPWDDVVAGGDDPMGAGVPGMGLELMAE
ATDKFQEQMDKMARRMETVEMAEATEAAARKARDEAFLRRR
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mRNA from alignment at S-ischiensis_contig105:128507..130314-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig105.1837.1 ID=mRNA_S-ischiensis_contig105.1837.1|Name=mRNA_S-ischiensis_contig105.1837.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1808bp|location=Sequence derived from alignment at S-ischiensis_contig105:128507..130314- (Schizocladia ischiensis KU_0333)
CCCGCAGGTCGGGGCCTTGCGGCGCTTGCGGGGAGCTTGCACGGCTCTCG
CCAGCTGCCTGAAGATGACCCCTGGGACGACGTGGTTGCAGGCGGCGATG
ACCCCATGGGCGCTGGGGTGCCAGGTGTGTGTGGGGGGGGTGGGTGGGTG
GGTGGGTGGGTGACGCGGATATGGTTGTAACCGAGTAGTGTTGCTGTACT
GTTGCGCAAAGACCAACACCCTGGTTGCCCCGCCAAGGCTGGTTGTCAGT
TTGCATGCACCGTCTACCTGTTTCATGAGGCTTGTGCCCCGACTTGTGAC
AGATGTGTGCTGGTTTCATTTGGTAGATGGCAGACGCTTGGGGGTGTTTG
TGCTCGTGGCATTGTCATCCTGAGGTGCCTTTGGGCGTTTTGCTATACAG
GAAGCTTGACACGGCAGTACAGCTGTGCCAGCACCCTGCATGTTGCAGTT
TTCATACGAAGCTTCGCATGGTTTTCTGCTCTGCTTCGGTGTTAAATACA
CTTTCGGCCACCCGAGCATGACTAGCTCCGCTTTCTTGTACGTGTGGGGT
CTGCGTCATCCATCTCAGTCATTGAACGATGGGCAGCCATGTGCACTGTG
TGATAGTTTCGTGGCAGTGTGGATGCCCTGCAAGGCTCTTGGAGCCTCCA
GAACAGCGATAATCTGTCCAATCGGCCACCGGCGTGTCTCGAAAGCGCCT
CGGCAGGTCACATTTGCACCCGTGGTCGTATGCCTGGCCAGCACACGCAA
ACTGGCCTCTGTATCGGTGCCTTCGCTACGGTCTATGTGCTACTTACTGC
AGTACGAGTACTACTACTACAAAGGGGTTCCTACGCGATTGCGAGTACTA
CGCACGTACAGTTCCTCACCCTTGCCTGACCTGACCAATATGCTTCCAAG
TACTTCCAAGCACTGTGGTTAGCTGGAGGGAATAGTGTACTAGTAGTGCG
CTGTACGTCATCCCTGGCCCTCATGGCATGCTGCATATGGAATGTTGCAC
CACAGGCATGGGCCTGGAGCTTATGGCTGAGGCCACGGACAAGTTCCAGG
AGCAGATGGACAAGATGGCCCGCCGCATGGTGAGTCAACTCAGACAGGTC
TTTTCACACCACAGTGTGTACTCACGTTCGGACGAGGTTTCTCGTCTCGG
TGCATGCCCTGGACCCGAACGATCCTCGTCTTTGTTCCTTCACCACAGTA
TATATGTACTCACGTGGTGCTTGCCGCAGTCCCGAGACCATTGACCCCGC
GCCTCGTTCGAGGCGGAGCAGGACCCCTCCCTCCCCTGGCAGAGCCAGGG
TGGGAGGGGGTGGCCACCCCCCCGCCAGAGTACGCCCCATAAAGGCATGT
TCCTCGCATGGGCTAGGGGGCTGTCCCAAGGCTTGGCATGGCGCCTTCCT
TGTACTGTAAACTCCCGTTTGGGCGGGTGTGCACATGATGGTGTTGTGTA
TCTCAGCCTCACCCTTGCCTTCCACGTGGCCTTGCCTCACACGCTCGGCA
CTGTTGTACCCTGGCTCCCCCTACCTGCCGCAGGCATTGGTCTCTCTGCC
TGCCTGCTTGCTTGCCTGCCTCCCGGCCTGTCCTTGGTGTGCGTCCCCCG
CCTATGCCTAAAGCTGGTGCACACACATAAATTCCGCGTGGTCAGGCATA
CGCACACACACATTCACATCATTGAGCTTCCGTTGGCCCGGAAACCTTTG
ACCGCGTTGTGATGCGGGGCCTTTTGGGTGCAGGAAACGGTTGAAATGGC
GGAAGCGACTGAGGCGGCGGCGCGAAAGGCCAGGGACGAGGCGTTCCTCC
GCCGTCGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig105:128507..130314-

>mRNA_S-ischiensis_contig105.1837.1 ID=mRNA_S-ischiensis_contig105.1837.1|Name=mRNA_S-ischiensis_contig105.1837.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=546bp|location=Sequence derived from alignment at S-ischiensis_contig105:128507..130314- (Schizocladia ischiensis KU_0333)
CCCGCAGGTCGGGGCCTTGCGGCGCTTGCGGGGAGCTTGCACGGCTCTCG
CCAGCTGCCTGAAGATGACCCCTGGGACGACGTGGTTGCAGGCGGCGATG
ACCCCATGGGCGCTGGGGTGCCAGCCCGCAGGTCGGGGCCTTGCGGCGCT
TGCGGGGAGCTTGCACGGCTCTCGCCAGCTGCCTGAAGATGACCCCTGGG
ACGACGTGGTTGCAGGCGGCGATGACCCCATGGGCGCTGGGGTGCCAGGC
ATGGGCCTGGAGCTTATGGCTGAGGCCACGGACAAGTTCCAGGAGCAGAT
GGACAAGATGGCCCGCCGCATGGCATGGGCCTGGAGCTTATGGCTGAGGC
CACGGACAAGTTCCAGGAGCAGATGGACAAGATGGCCCGCCGCATGGAAA
CGGTTGAAATGGCGGAAGCGACTGAGGCGGCGGCGCGAAAGGCCAGGGAC
GAGGCGTTCCTCCGCCGTCGCGAAACGGTTGAAATGGCGGAAGCGACTGA
GGCGGCGGCGCGAAAGGCCAGGGACGAGGCGTTCCTCCGCCGTCGC
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