mRNA_S-ischiensis_contig105.1836.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig105.1836.1
Unique NamemRNA_S-ischiensis_contig105.1836.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig105.1836.1 vs. uniprot
Match: A0A6H5L9W7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9W7_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 8.290e-12
Identity = 55/116 (47.41%), Postives = 71/116 (61.21%), Query Frame = 1 
Query:   58 PVAPSLGASGEALDKPAAPKPEPVPLVAAASAVPQNLNQKARKAYEKKLKADQARQAQLAAAQAQQPK-AWGAGAAQQPTGKPNFKDIQAEEGQRKHVHTDAEGPGQAAALEDQRR 402
            P +P +G +GE L+KPAA KP+PVPLVAAASA+P  LNQKARKAYEKKLK + A+              AWG+ A      K +  +IQAEEG+R+        P QA +L ++ R
Sbjct:  265 PPSPLVGPTGEPLEKPAAEKPQPVPLVAAASAIPAGLNQKARKAYEKKLKQEAAKXXXXXXXXXXXXXXAWGSNAVAT-VPKKSLAEIQAEEGKRQAQEAALHTPAQAQSLAEEHR 379
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig105.1836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L9W7_9PHAE8.290e-1247.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig105contigS-ischiensis_contig105:119526..120935 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size555
Cds size552
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig105.1836.1prot_S-ischiensis_contig105.1836.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig105 119528..120935 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815564.8516097-CDS-S-ischiensis_contig105:119527..1197581622815564.8516097-CDS-S-ischiensis_contig105:119527..119758Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 119528..119758 -
1695739773.1969645-CDS-S-ischiensis_contig105:119527..1197581695739773.1969645-CDS-S-ischiensis_contig105:119527..119758Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 119528..119758 -
1622815564.8640215-CDS-S-ischiensis_contig105:120098..1202331622815564.8640215-CDS-S-ischiensis_contig105:120098..120233Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 120099..120233 -
1695739773.2066891-CDS-S-ischiensis_contig105:120098..1202331695739773.2066891-CDS-S-ischiensis_contig105:120098..120233Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 120099..120233 -
1622815564.877037-CDS-S-ischiensis_contig105:120749..1209351622815564.877037-CDS-S-ischiensis_contig105:120749..120935Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 120750..120935 -
1695739773.2173762-CDS-S-ischiensis_contig105:120749..1209351695739773.2173762-CDS-S-ischiensis_contig105:120749..120935Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 120750..120935 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig105.1836.1

>prot_S-ischiensis_contig105.1836.1 ID=prot_S-ischiensis_contig105.1836.1|Name=mRNA_S-ischiensis_contig105.1836.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=184bp
QLLQQQQQQAAAAAAAAAAPVAPSLGASGEALDKPAAPKPEPVPLVAAAS
AVPQNLNQKARKAYEKKLKADQARQAQLAAAQAQQPKAWGAGAAQQPTGK
PNFKDIQAEEGQRKHVHTDAEGPGQAAALEDQRRTMMAAAPPPAPPQASP
QAGRAWGKVKEPVPWGGGGGPPKSLLEIQREEKQ
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mRNA from alignment at S-ischiensis_contig105:119526..120935-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig105.1836.1 ID=mRNA_S-ischiensis_contig105.1836.1|Name=mRNA_S-ischiensis_contig105.1836.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1410bp|location=Sequence derived from alignment at S-ischiensis_contig105:119526..120935- (Schizocladia ischiensis KU_0333)
CAACTGCTGCAGCAGCAGCAGCAGCAGGCGGCAGCGGCCGCCGCCGCAGC
GGCCGCCCCAGTGGCCCCGTCCCTTGGCGCATCTGGGGAGGCTTTGGACA
AGCCGGCCGCGCCCAAGCCAGAGCCTGTGCCTCTGGTGGCTGCCGCTAGC
GCTGTGCCGCAGAACCTCAACCAAAAGGCTCGAAAGGTGGGGAAGGAGAA
GAGAGCTTTCCGGTCACGCCGAAAAAAAAAGAAGAAAAGAAGCAAAAAAA
TGACGTCGAGAAGAGAGGTTTCCGGTCGCGTCGAGTGTGTGGCATGGCTC
CTGATGAATGCCAGCGCAATCGGACATCCAAGTGCTCCGCTGCAGAGCAC
GCGTGCGCAATGGTCTCTTTCGTGTCATGAGCTATGTGAGCGGGTCTTGA
GGGTGGAAGCGTGTAGTTTACTTGCGCTTTGCTGCGGTTGAGTTAACAAC
CGGCCGTATTTCGTGTGTTCACTTGAAATAACTCTATGCAGTTAGCTTGA
AACGTTACAATGGTACTTCTTTTCAGTAATCTACAACGGAACAGTGCACA
CTCAGTAGTCTCAGTCATGTCCTTCGGGACCTACACCAGACACGTCGACA
GTGACTATAGCTGAGCCGCATGACGTGTTGATCAGCCAGTGCTTGACGTG
GACTACCTCCTCTTCTTGGTCGCCACTGTGGTTGAAATGAACAACTTGGC
AGGCGTACGAGAAGAAGCTCAAGGCAGACCAGGCCAGGCAGGCCCAGCTT
GCAGCCGCCCAGGCCCAGCAGCCCAAGGCGTGGGGGGCTGGTGCCGCCCA
GCAGCCAACCGGCAAGCCCAACTTCAAGGACATACAGGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTCACATGTCCTCCTACCCCGGTTACCCAAGTGGG
TGCAGAGCATGTGCATGTGGCCCTGCCCACGTGGACCGTTTTCAACCCAT
GGTTTCCACAGTACAGGGATTTGCCCCCACACGCACATGGACGGTACGGT
ACATGTGCTACTGTGCGTGTGTACGGTATGTATGTGTGTACCGTCCAAGT
GTGTGTGTGTGTGTGTGTGTGCTACGGTACGTAGCGTCCAAAAAAGCAAA
GTGCGGCACGGTACGTAGCGTGTACAGTAACGGGGACTCCTTGCTCTCAC
CTGCTGCCTGGTGACGACCCTCCTCAGGCCGAAGAGGGCCAGCGCAAGCA
CGTGCACACGGACGCCGAGGGCCCCGGCCAGGCTGCCGCGCTGGAGGACC
AGCGCCGCACAATGATGGCGGCTGCGCCTCCACCGGCGCCGCCGCAGGCA
TCTCCTCAGGCGGGGCGCGCTTGGGGGAAGGTGAAGGAGCCTGTGCCCTG
GGGTGGGGGCGGGGGTCCGCCCAAGTCCCTCTTGGAGATACAGCGAGAGG
AGAAGCAGCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig105:119526..120935-

>mRNA_S-ischiensis_contig105.1836.1 ID=mRNA_S-ischiensis_contig105.1836.1|Name=mRNA_S-ischiensis_contig105.1836.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1104bp|location=Sequence derived from alignment at S-ischiensis_contig105:119526..120935- (Schizocladia ischiensis KU_0333)
CAACTGCTGCAGCAGCAGCAGCAGCAGGCGGCAGCGGCCGCCGCCGCAGC
GGCCGCCCCAGTGGCCCCGTCCCTTGGCGCATCTGGGGAGGCTTTGGACA
AGCCGGCCGCGCCCAAGCCAGAGCCTGTGCCTCTGGTGGCTGCCGCTAGC
GCTGTGCCGCAGAACCTCAACCAAAAGGCTCGAAAGCAACTGCTGCAGCA
GCAGCAGCAGCAGGCGGCAGCGGCCGCCGCCGCAGCGGCCGCCCCAGTGG
CCCCGTCCCTTGGCGCATCTGGGGAGGCTTTGGACAAGCCGGCCGCGCCC
AAGCCAGAGCCTGTGCCTCTGGTGGCTGCCGCTAGCGCTGTGCCGCAGAA
CCTCAACCAAAAGGCTCGAAAGGCGTACGAGAAGAAGCTCAAGGCAGACC
AGGCCAGGCAGGCCCAGCTTGCAGCCGCCCAGGCCCAGCAGCCCAAGGCG
TGGGGGGCTGGTGCCGCCCAGCAGCCAACCGGCAAGCCCAACTTCAAGGA
CATACAGGCGTACGAGAAGAAGCTCAAGGCAGACCAGGCCAGGCAGGCCC
AGCTTGCAGCCGCCCAGGCCCAGCAGCCCAAGGCGTGGGGGGCTGGTGCC
GCCCAGCAGCCAACCGGCAAGCCCAACTTCAAGGACATACAGGCCGAAGA
GGGCCAGCGCAAGCACGTGCACACGGACGCCGAGGGCCCCGGCCAGGCTG
CCGCGCTGGAGGACCAGCGCCGCACAATGATGGCGGCTGCGCCTCCACCG
GCGCCGCCGCAGGCATCTCCTCAGGCGGGGCGCGCTTGGGGGAAGGTGAA
GGAGCCTGTGCCCTGGGGTGGGGGCGGGGGTCCGCCCAAGTCCCTCTTGG
AGATACAGCGAGAGGAGAAGCAGGCCGAAGAGGGCCAGCGCAAGCACGTG
CACACGGACGCCGAGGGCCCCGGCCAGGCTGCCGCGCTGGAGGACCAGCG
CCGCACAATGATGGCGGCTGCGCCTCCACCGGCGCCGCCGCAGGCATCTC
CTCAGGCGGGGCGCGCTTGGGGGAAGGTGAAGGAGCCTGTGCCCTGGGGT
GGGGGCGGGGGTCCGCCCAAGTCCCTCTTGGAGATACAGCGAGAGGAGAA
GCAG
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