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Homology
BLAST of mRNA_S-ischiensis_contig105.1834.1 vs. uniprot
Match: A0A6H5L268_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L268_9PHAE) HSP 1 Score: 57.0 bits (136), Expect = 1.380e-5 Identity = 72/214 (33.64%), Postives = 100/214 (46.73%), Query Frame = 1
Query: 16 SATPYRYDPNDLSMEEDGSSSTSSSAIKALNFAK---------------ASGARTSTSGG---------SGISPADGLYGFMGSMYDIQEQGGGSQGA--GTSSYASSRVQGRMSLSGVSVFSDDDDEEDACDLDLSDIDPTVLARAKLHEEEDEEGKGHRLRLDSGQKLAGGSV-----DGSSCSSKGRKQVSIVTEASPQEEL-GGARREGV 561
S+ P+RYDPNDLS E+D S+ SAIK LNF+K AS A +STSG SG SP G+ +++E SQ A G A++ +G S SGV ++SDDD DL +SDID V+ARA E++ K R+ + ++ GG DG+ ++ +V E +L GA RE
Sbjct: 303 SSAPFRYDPNDLSTEDDTGSA--QSAIKNLNFSKIAKESGGRGGASVDRASRAGSSTSGSGSNTSLTTRSGASPDW----MRGANEEVEEDEKDSQAASSGAKGGATASGEGIESFSGV-IYSDDDS-----DLSVSDIDEGVIARANAFAAEEDARKA-RMEAEEAGRVPGGVARDVVDDGAGAKDGSLREEDVVAEVPEGADLDAGAAREAT 503
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 813 |
| Cds size | 813 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815563.0692308-CDS-S-ischiensis_contig105:105725..105996 | 1622815563.0692308-CDS-S-ischiensis_contig105:105725..105996 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig105 105726..105996 + |
| 1695739772.3119645-CDS-S-ischiensis_contig105:105725..105996 | 1695739772.3119645-CDS-S-ischiensis_contig105:105725..105996 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig105 105726..105996 + |
| 1622815563.0801752-CDS-S-ischiensis_contig105:106931..107033 | 1622815563.0801752-CDS-S-ischiensis_contig105:106931..107033 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig105 106932..107033 + |
| 1695739772.3244996-CDS-S-ischiensis_contig105:106931..107033 | 1695739772.3244996-CDS-S-ischiensis_contig105:106931..107033 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig105 106932..107033 + |
| 1622815563.093538-CDS-S-ischiensis_contig105:107906..108127 | 1622815563.093538-CDS-S-ischiensis_contig105:107906..108127 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig105 107907..108127 + |
| 1695739772.3348129-CDS-S-ischiensis_contig105:107906..108127 | 1695739772.3348129-CDS-S-ischiensis_contig105:107906..108127 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig105 107907..108127 + |
| 1622815563.105903-CDS-S-ischiensis_contig105:108685..108904 | 1622815563.105903-CDS-S-ischiensis_contig105:108685..108904 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig105 108686..108904 + |
| 1695739772.345138-CDS-S-ischiensis_contig105:108685..108904 | 1695739772.345138-CDS-S-ischiensis_contig105:108685..108904 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig105 108686..108904 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig105.1834.1 >prot_S-ischiensis_contig105.1834.1 ID=prot_S-ischiensis_contig105.1834.1|Name=mRNA_S-ischiensis_contig105.1834.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=271bp
MCTWCSATPYRYDPNDLSMEEDGSSSTSSSAIKALNFAKASGARTSTSGG
SGISPADGLYGFMGSMYDIQEQGGGSQGAGTSSYASSRVQGRMSLSGVSV
FSDDDDEEDACDLDLSDIDPTVLARAKLHEEEDEEGKGHRLRLDSGQKLA
GGSVDGSSCSSKGRKQVSIVTEASPQEELGGARREGVQRRSTPHPVRQAR
RTSKGPSRGEASAASVGQDKTNTVVNSMAPPPPRRVLSPADSTASSGSGG
GRRRKGTPHPGTRKKVAARTK back to topmRNA from alignment at S-ischiensis_contig105:105726..108904+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig105.1834.1 ID=mRNA_S-ischiensis_contig105.1834.1|Name=mRNA_S-ischiensis_contig105.1834.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3179bp|location=Sequence derived from alignment at S-ischiensis_contig105:105726..108904+ (Schizocladia ischiensis KU_0333)
ATGTGCACTTGGTGCAGTGCCACCCCGTACCGCTACGACCCCAATGACCT
AAGTATGGAGGAGGATGGCAGCAGCTCCACGTCCAGCTCTGCCATCAAGG
CCCTCAACTTCGCAAAGGCCTCAGGTGCCAGGACCAGCACCAGCGGTGGC
AGCGGCATCAGCCCTGCTGATGGCCTGTACGGCTTTATGGGGAGCATGTA
TGATATCCAGGAACAGGGAGGTGGCAGCCAGGGGGCAGGCACAAGCAGCT
ACGCCTCCTCAAGGGTGCAAGGTATACTACAGTACAGTACGATGCTACTG
TACATCAGTGATGGAATATCGATCAGTAGATAGTTATTGGGCTCGACTGG
CTCTGTGGGTGGCGTTGCTAAGTACTTCGAAGTACTTGGATATAGTGTGG
TTCAAAATATCGAATATCGACTATCGATATATATATATATATACTTGCCC
TGCGAGGGGAAGAAGGGCTTCGTTGAGTTCCGTTTCGGGACGAGCCTTTT
GGCACGGGGTCTGGAACTCGCCGCTTATCTACCACTCAAAAATAGATCAG
TGCCGTCGATAAATAGGTTGATTTGCTTAGATGTTCCATCACTGCTGTAC
AAAGTGTATGAGTACTGTACTGGGTGACAGTGTAGTACATTAGCTGCACT
GCAACGGCTGTAGGTCGGTGTGATTGAAAGCGCATGCTCTTGTACTTGAA
GTACAATGCTGCAGGATGTCGTGGCACACAGCCCTGGCCGGCCAGAGCCT
GGCCAACCTTCCGCCAAGACTGGGTCGGTGCTGCGTGCCCCGGCCGGGAA
TTGTATTTTACCTTTACCGAGGAACCCCACTTGTGAGCGCGAGCTCAGCT
GGGGTTGGTGTCCACTCACGTGCTTCACTCTCGCCCGGTTATCTCTCATG
CACACCTCTCTTGGCTGGCTAGGCGCACAAATCAAAGTACAGCAGGAGGC
AAGAAGAACTGTGGCCATGACCTGCTCCGAGTCGTCTCCACTACTAGAGT
ACAGTGCTGTAGTAGTACTTGGAAGTACTTGCACAGGACAAGTCCTTTCC
TCTCGGCTCTCGCCGACCTGCCCTATCAATCACTATTCCACTGTTACGAG
AATACTCTATCTCACACATGTGCAATTGTACCTCGTTACAACTTGTAGTA
TGAATAATTCCGCTTTTGTGCAACACAAGAACGCGTTCGCGCTCCCGCAA
CAACAGGTCGGATGTCCCTGTCTGGTGTGTCAGTCTTCAGCGACGATGAC
GACGAGGAGGATGCCTGTGACCTGGATCTGAGCGACATTGACCCTACCGT
GCTGGCACGTGAGTTTTCCGCCCGTAGGGGGTGTCCAAAAAAGCTGACAA
GGACTGGGAATCGGGTTTGGTGCAACCTGCAATCGACGCGGCGTGAGCGG
TTTAGGGGGGGTAGTGCTGAGGTTGTTTGGCCGTCCACAGCTTTGGGAGA
AAATGAATCGCTTTTGAAGTTTCAAGTTTCCCCTTAAAATTCCTATGTGT
TGTTGCAACACTGACCGGGCCGCGATTTTTTAATATTGGAATCGTGTTGT
TTTTGGACCCGTATTGATTCTAACCTCTGAAGGTAATATATGAATGCCAT
TTTCGATGTGATCCCGGCCGAATCGCTGGTCGGGTACTAGGCCCTGGGTA
TCATGGCCCTCTTTTCTCGCAACCCAATGCCTTGCTCAGGCGTTTGTCCG
TCTGTCGCAAGCACCCTGCTTACAGACAGCACAGTAGAGCACGTGGCCTG
GATGTGTTGTAGGAACCTCCGAGGCAAGCGTGAGGTAGATACAGATATAC
TGTAGGCACTGCAGTTTTTCTCCAAGGCAAGCGTCAGGAAGATATATATA
TACATACATACTTCAAAGTATACTACAATACGATGTATATACTGCAGGCA
CTGCAGTTTTTCTTTTGTTCCGCTGAAGGAGAGGACCCATGCATTGCGGT
TAGGCCCAGGGTTGGAAGGTTTCATGCGGAAGAAAGACGCACGGAGAGAG
TGGTGAAGGGGGAAGGGGGAGGCTACAGCTGTTGGAAGCAGGGTGTAAGC
AGGATGCTGCCCTTAACCCTTTTACACCTGAGGTCCGTATGGCCATAGGG
TTTTAGTGCGTAGGTCCAATTTAGCAGGGGTAAAAGGGTTAATCGCTATG
GGTTTGCATGTGGTTGTGCTGCTGTCCTCAGGCGCCAAGCTGCATGAAGA
GGAGGACGAGGAGGGCAAGGGGCACCGACTGCGGCTGGACAGCGGGCAGA
AACTTGCCGGGGGCAGCGTGGATGGCAGCAGCTGCTCCAGCAAGGGGAGG
AAGCAAGTCAGCATCGTCACTGAGGCCAGCCCGCAGGAGGAGCTCGGTGG
CGCGCGGCGAGAGGGAGTGCAGAGGCGTTCCACCCCCCACCCTGTGCGCC
AGGCAAGTACTTTGAAGTGCGAGTATTGCAGCGCAGTATCGCAAGTGTTC
ACAGAAACGACACAGGACGAGGTGCAGGCCACGTCACTGAAGACCTCAGC
AGTGGCCCTTCCGTACAGTATCATAAGTTCTTAGCAGTGATGTACAGTGC
AACACTGCAGCGTACAGTACTGTGTATGATGTCGTACAGTGGTGTCTGTG
GGGTTGGCTCTCCTGGAGTGGGTGTGTAGGACTCGCTGCGCCCATTCAGC
TGCGCGTGGGCTGTACAGTAGTACTCGTGCACAGGTAGACGCTGCCTACC
TGTAGTAGTAGCAGGCCCGGGGCTCTCGGCGAGCGTTGTGGTCCCCTCCC
AAACGGTAGCACGCGAAGCGAAGCGAGGCGTTGTGTTGTGTTGTGTTTTT
GAACAGTACGGCACAGTATACTTAGCAAGCGACGGCACCGCACATCAACT
CTCTCAAGTCCTGTGGACTGCTCTTCTTCAAGTATCCTACAGTACCTCGC
ACGTGTTTACGAGGCGTTTTGTGTGCCATCACCCCGCCTGTACCCCCCTC
CCATCAGCAGGCTCGGAGGACCAGCAAAGGCCCCAGCCGCGGAGAGGCGA
GCGCGGCCTCGGTCGGCCAAGACAAGACAAACACTGTGGTCAACTCCATG
GCCCCGCCGCCCCCCCGGCGCGTCCTCTCGCCAGCTGACTCAACTGCAAG
CAGTGGCAGCGGGGGCGGGAGAAGGAGGAAGGGAACGCCTCACCCTGGAA
CTCGCAAGAAGGTTGCGGCTCGCACCAAG back to topCoding sequence (CDS) from alignment at S-ischiensis_contig105:105726..108904+ >mRNA_S-ischiensis_contig105.1834.1 ID=mRNA_S-ischiensis_contig105.1834.1|Name=mRNA_S-ischiensis_contig105.1834.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1626bp|location=Sequence derived from alignment at S-ischiensis_contig105:105726..108904+ (Schizocladia ischiensis KU_0333)
ATGTGCACTTGGTGCAGTGCCACCCCGTACCGCTACGACCCCAATGACCT
AAGTATGGAGGAGGATGGCAGCAGCTCCACGTCCAGCTCTGCCATCAAGG
CCCTCAACTTCGCAAAGGCCTCAGGTGCCAGGACCAGCACCAGCGGTGGC
AGCGGCATCAGCCCTGCTGATGGCCTGTACGGCTTTATGGGGAGCATGTA
TGATATCCAGGAACAGGGAGGTGGCAGCCAGGGGGCAGGCACAAGCAGCT
ACGCCTCCTCAAGGGTGCAAGATGTGCACTTGGTGCAGTGCCACCCCGTA
CCGCTACGACCCCAATGACCTAAGTATGGAGGAGGATGGCAGCAGCTCCA
CGTCCAGCTCTGCCATCAAGGCCCTCAACTTCGCAAAGGCCTCAGGTGCC
AGGACCAGCACCAGCGGTGGCAGCGGCATCAGCCCTGCTGATGGCCTGTA
CGGCTTTATGGGGAGCATGTATGATATCCAGGAACAGGGAGGTGGCAGCC
AGGGGGCAGGCACAAGCAGCTACGCCTCCTCAAGGGTGCAAGGTCGGATG
TCCCTGTCTGGTGTGTCAGTCTTCAGCGACGATGACGACGAGGAGGATGC
CTGTGACCTGGATCTGAGCGACATTGACCCTACCGTGCTGGCACGTCGGA
TGTCCCTGTCTGGTGTGTCAGTCTTCAGCGACGATGACGACGAGGAGGAT
GCCTGTGACCTGGATCTGAGCGACATTGACCCTACCGTGCTGGCACGCGC
CAAGCTGCATGAAGAGGAGGACGAGGAGGGCAAGGGGCACCGACTGCGGC
TGGACAGCGGGCAGAAACTTGCCGGGGGCAGCGTGGATGGCAGCAGCTGC
TCCAGCAAGGGGAGGAAGCAAGTCAGCATCGTCACTGAGGCCAGCCCGCA
GGAGGAGCTCGGTGGCGCGCGGCGAGAGGGAGTGCAGAGGCGTTCCACCC
CCCACCCTGTGCGCCAGGCGCCAAGCTGCATGAAGAGGAGGACGAGGAGG
GCAAGGGGCACCGACTGCGGCTGGACAGCGGGCAGAAACTTGCCGGGGGC
AGCGTGGATGGCAGCAGCTGCTCCAGCAAGGGGAGGAAGCAAGTCAGCAT
CGTCACTGAGGCCAGCCCGCAGGAGGAGCTCGGTGGCGCGCGGCGAGAGG
GAGTGCAGAGGCGTTCCACCCCCCACCCTGTGCGCCAGGCTCGGAGGACC
AGCAAAGGCCCCAGCCGCGGAGAGGCGAGCGCGGCCTCGGTCGGCCAAGA
CAAGACAAACACTGTGGTCAACTCCATGGCCCCGCCGCCCCCCCGGCGCG
TCCTCTCGCCAGCTGACTCAACTGCAAGCAGTGGCAGCGGGGGCGGGAGA
AGGAGGAAGGGAACGCCTCACCCTGGAACTCGCAAGAAGGTTGCGGCTCG
CACCAAGGCTCGGAGGACCAGCAAAGGCCCCAGCCGCGGAGAGGCGAGCG
CGGCCTCGGTCGGCCAAGACAAGACAAACACTGTGGTCAACTCCATGGCC
CCGCCGCCCCCCCGGCGCGTCCTCTCGCCAGCTGACTCAACTGCAAGCAG
TGGCAGCGGGGGCGGGAGAAGGAGGAAGGGAACGCCTCACCCTGGAACTC
GCAAGAAGGTTGCGGCTCGCACCAAG back to top
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