mRNA_S-ischiensis_contig105.1832.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig105.1832.1
Unique NamemRNA_S-ischiensis_contig105.1832.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig105.1832.1 vs. uniprot
Match: A0A7K4Y964_BUCAB (ASB18 protein (Fragment) n=2 Tax=Bucerotiformes TaxID=57379 RepID=A0A7K4Y964_BUCAB)

HSP 1 Score: 55.1 bits (131), Expect = 2.340e-7
Identity = 30/54 (55.56%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    1 RDLIAHGAEVNSQDNRGRSPLHAACRAADAIAVQVLLKAGADPALEDNMGLSPL 162
            R L AHGA++N+QD   RSPLH AC AA+A  V  LL+ GAD    D  G+SPL
Sbjct:  246 RLLAAHGADINTQDETQRSPLHKACGAANADVVHFLLRRGADVNAIDYGGVSPL 299
[Close]
BLAST of mRNA_S-ischiensis_contig105.1832.1 vs. uniprot
Match: A0A067MAC9_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067MAC9_9AGAM)

HSP 1 Score: 52.8 bits (125), Expect = 3.510e-7
Identity = 29/55 (52.73%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:    7 LIAHGAEVNSQDNRGRSPLHAACRAADAIAVQVLLKAGADPALEDNMGLSPLEVA 171
            LI  GA+V++ D+ GRSPL  A R   A AVQ+LL+AGADP L D    +PL +A
Sbjct:   48 LIDGGADVHAVDDFGRSPLFHAARDGSAAAVQLLLRAGADPHLRDKQSQTPLHLA 102
[Close]
BLAST of mRNA_S-ischiensis_contig105.1832.1 vs. uniprot
Match: A0A7K6BBI2_UPUEP (ASB18 protein (Fragment) n=1 Tax=Upupa epops TaxID=57439 RepID=A0A7K6BBI2_UPUEP)

HSP 1 Score: 53.9 bits (128), Expect = 5.990e-7
Identity = 29/54 (53.70%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    1 RDLIAHGAEVNSQDNRGRSPLHAACRAADAIAVQVLLKAGADPALEDNMGLSPL 162
            R L AHGA++N+QD   RSPLH AC AA+A  V+ LL  GAD    D  G+SP+
Sbjct:  246 RLLTAHGADINTQDEEQRSPLHKACGAANASLVRFLLCRGADVGAIDYGGVSPM 299
[Close]
BLAST of mRNA_S-ischiensis_contig105.1832.1 vs. uniprot
Match: A0A3C0DQL7_9BACT (Acyl_transf_3 domain-containing protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A3C0DQL7_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 1.550e-6
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    7 LIAHGAEVNSQDNRGRSPLHAACRAADAIAVQVLLKAGADPALEDN-MGLSPLEV 168
            L+  G +VN +D  GR+PL+ ACR  D   ++ LLKAGADP +++N  G SPL+V
Sbjct:  511 LLERGIDVNHRDKFGRTPLYMACRYGDKSDIEKLLKAGADPNIQENRFGHSPLQV 565
[Close]
BLAST of mRNA_S-ischiensis_contig105.1832.1 vs. uniprot
Match: A0A7L1NVT2_RHICY (ASB18 protein (Fragment) n=1 Tax=Rhinopomastus cyanomelas TaxID=113115 RepID=A0A7L1NVT2_RHICY)

HSP 1 Score: 52.0 bits (123), Expect = 2.870e-6
Identity = 29/54 (53.70%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    1 RDLIAHGAEVNSQDNRGRSPLHAACRAADAIAVQVLLKAGADPALEDNMGLSPL 162
            R L AHGA++N++D   RSPLH ACRAA+A  V+ LL  GA     D  G+SPL
Sbjct:  246 RLLTAHGADINARDEAQRSPLHKACRAANAGLVRFLLCRGAAVGAVDYGGVSPL 299
[Close]
BLAST of mRNA_S-ischiensis_contig105.1832.1 vs. uniprot
Match: A0A3R7IFC1_9STRA (TIR domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7IFC1_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 3.950e-6
Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    4 DLIAHGAEVNSQDNRGRSPLHAACRAADAIAVQVLLKAGADPALEDNMGLSPLEVA 171
            +L+ HGA+VN++D+ GR+PLH A R   A AV+ LL   ADP   D+ G++PL  A
Sbjct:    9 ELVKHGADVNTKDSHGRTPLHWAARHNYAEAVEELLALDADPLQLDHDGMTPLAFA 64
[Close]
BLAST of mRNA_S-ischiensis_contig105.1832.1 vs. uniprot
Match: A0A812RSN6_9DINO (ANKRD52 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812RSN6_9DINO)

HSP 1 Score: 51.2 bits (121), Expect = 5.450e-6
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:   19 GAEVNSQDNRGRSPLHAACRAADAIAVQVLLKAGADPALEDNMGLSPLEVA 171
            G ++N QD+ G +PLH A     A AV+VLL  GA+ ALE+  GL+PLEVA
Sbjct:  759 GMDINGQDSEGDTPLHWAAFVGSAAAVKVLLSKGANAALENYSGLTPLEVA 809
[Close]
BLAST of mRNA_S-ischiensis_contig105.1832.1 vs. uniprot
Match: U1SAS7_9PAST (Ankyrin repeat protein (Fragment) n=5 Tax=Pasteurellaceae TaxID=712 RepID=U1SAS7_9PAST)

HSP 1 Score: 49.7 bits (117), Expect = 6.980e-6
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:   10 IAHGAEVNSQDNRGRSPLHAACRAADAIAVQVLLKAGADPALEDNMGLSPL 162
            I HG E+N+QD  G +PLH A R+ +  A   LLKAGA+P L +  G++PL
Sbjct:   69 IKHGVEINAQDMYGMTPLHYALRSKNIDAAIALLKAGANPNLPNERGITPL 119
[Close]
BLAST of mRNA_S-ischiensis_contig105.1832.1 vs. uniprot
Match: A0A812N7J3_SYMMI (ANK1 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812N7J3_SYMMI)

HSP 1 Score: 50.8 bits (120), Expect = 7.510e-6
Identity = 28/55 (50.91%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:    7 LIAHGAEVNSQDNRGRSPLHAACRAADAIAVQVLLKAGADPALEDNMGLSPLEVA 171
             I  G +V+ QD+ G +PLH A    +A AV+VLL  GA+ ALE+  GL+PLEVA
Sbjct:  665 FIKLGMDVDGQDSEGDTPLHWAAFVGNATAVKVLLSKGANAALENYSGLTPLEVA 719
[Close]
BLAST of mRNA_S-ischiensis_contig105.1832.1 vs. uniprot
Match: A0A812YUI3_9DINO (Peptide deformylase n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812YUI3_9DINO)

HSP 1 Score: 50.8 bits (120), Expect = 7.510e-6
Identity = 28/55 (50.91%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:    7 LIAHGAEVNSQDNRGRSPLHAACRAADAIAVQVLLKAGADPALEDNMGLSPLEVA 171
             I  G +V+ QD+ G +PLH A    +A AV+VLL  GA+ ALE+  GL+PLEVA
Sbjct:  667 FIKLGMDVDGQDSEGDTPLHWAAFVGNATAVKVLLSKGANAALENYSGLTPLEVA 721
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig105.1832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A7K4Y964_BUCAB2.340e-755.56ASB18 protein (Fragment) n=2 Tax=Bucerotiformes Ta... [more]
A0A067MAC9_9AGAM3.510e-752.73Uncharacterized protein (Fragment) n=1 Tax=Botryob... [more]
A0A7K6BBI2_UPUEP5.990e-753.70ASB18 protein (Fragment) n=1 Tax=Upupa epops TaxID... [more]
A0A3C0DQL7_9BACT1.550e-649.09Acyl_transf_3 domain-containing protein n=1 Tax=Ve... [more]
A0A7L1NVT2_RHICY2.870e-653.70ASB18 protein (Fragment) n=1 Tax=Rhinopomastus cya... [more]
A0A3R7IFC1_9STRA3.950e-648.21TIR domain-containing protein n=3 Tax=Phytophthora... [more]
A0A812RSN6_9DINO5.450e-652.94ANKRD52 protein n=1 Tax=Symbiodinium natans TaxID=... [more]
U1SAS7_9PAST6.980e-649.02Ankyrin repeat protein (Fragment) n=5 Tax=Pasteure... [more]
A0A812N7J3_SYMMI7.510e-650.91ANK1 protein n=2 Tax=Symbiodinium TaxID=2949 RepID... [more]
A0A812YUI3_9DINO7.510e-650.91Peptide deformylase n=1 Tax=Symbiodinium sp. KB8 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig105contigS-ischiensis_contig105:86003..87003 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size172
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815564.3165164-CDS-S-ischiensis_contig105:86003..860721622815564.3165164-CDS-S-ischiensis_contig105:86003..86072Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 86004..86072 -
1695739772.9192538-CDS-S-ischiensis_contig105:86003..860721695739772.9192538-CDS-S-ischiensis_contig105:86003..86072Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 86004..86072 -
1622815564.3294501-CDS-S-ischiensis_contig105:86901..870031622815564.3294501-CDS-S-ischiensis_contig105:86901..87003Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 86902..87003 -
1695739772.928667-CDS-S-ischiensis_contig105:86901..870031695739772.928667-CDS-S-ischiensis_contig105:86901..87003Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 86902..87003 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig105.1832.1prot_S-ischiensis_contig105.1832.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig105 86004..87003 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig105.1832.1

>prot_S-ischiensis_contig105.1832.1 ID=prot_S-ischiensis_contig105.1832.1|Name=mRNA_S-ischiensis_contig105.1832.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=57bp
RDLIAHGAEVNSQDNRGRSPLHAACRAADAIAVQVLLKAGADPALEDNMG
LSPLEVA
back to top

mRNA from alignment at S-ischiensis_contig105:86003..87003-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig105.1832.1 ID=mRNA_S-ischiensis_contig105.1832.1|Name=mRNA_S-ischiensis_contig105.1832.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1001bp|location=Sequence derived from alignment at S-ischiensis_contig105:86003..87003- (Schizocladia ischiensis KU_0333)
AGGGATCTCATTGCGCACGGCGCGGAGGTGAACTCCCAGGACAACAGGGG
ACGCTCGCCCTTGCATGCTGCGTGCCGAGCCGCCGATGCCATCGCAGTCC
AGGTAATGTGTGCTGCTGTGAGCTGTGTCTCCATGTATATAGGATAGAGC
TGTAGCGGCACGTACGTGCTACTTGAACGCTTTGCGGGCACTACAGCACT
ATGGACGTACTCGACTACTTGAGTTGCTACTTGGACGTAGACAGTATCAA
AGCATCAGTATGATAAGTACTTCCTAACGACCTTTCTCGTACTTCGAAGT
AGTCGCACGTAGTGGAGTAGGTAATGGAGGCAGACTCACGAGCATCACTA
CTACATGTACAAGTACTTGGTAGAACCCCTCTACACTGCTGTACTTCCTG
CGCGTTAGCTGTGAACACCTGGTAACGGGTGAGGTTTAATTAGTACGATA
GAGTACTTGAGTACTTTGAAGTGGATGCGCGACAGAGGGCTCTGGTCATT
CTACTGTACCTACTAGCAGCGTGTTCGAAAATGGGGACAGGTCATCGAAA
TTGCTCCTGCTACAGCCATAAATATCCAAAGCATTTCGAGGTACCAACCT
ACCGTACTCGATTGGACAAGGAAACACGATGAGTAGAGGCTCACCAGTGC
GTCTCCCAGCACCCACATGACCCAACCTGCTGTGTGCTGCAAACGGCGCT
GTTCTTGCAAGAAGCGTCGCGGGCGCCATACGACCTATACTTCAGTATGA
GTGTTCAAAGCCCCTGTGTGACCAGTTGGATCTTTACTGAGCCCCCACCA
GGCCTGCTGCGGACATTTATGCTCGGTGCTGGCTGCTCGATGCTCGACAC
ACTTTCTAGGCACTTCGAAGTACCTCGTACTGCTAAATGTGTGCTCAGTC
TTGACTGGTGGATACTCGCCACACCTTCCAGGTGCTGCTAAAGGCGGGCG
CAGACCCTGCACTCGAGGACAACATGGGGCTCTCCCCTCTCGAGGTCGCC
C
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig105:86003..87003-

>mRNA_S-ischiensis_contig105.1832.1 ID=mRNA_S-ischiensis_contig105.1832.1|Name=mRNA_S-ischiensis_contig105.1832.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=342bp|location=Sequence derived from alignment at S-ischiensis_contig105:86003..87003- (Schizocladia ischiensis KU_0333)
AGGGATCTCATTGCGCACGGCGCGGAGGTGAACTCCCAGGACAACAGGGG
ACGCTCGCCCTTGCATGCTGCGTGCCGAGCCGCCGATGCCATCGCAGTCC
AGAGGGATCTCATTGCGCACGGCGCGGAGGTGAACTCCCAGGACAACAGG
GGACGCTCGCCCTTGCATGCTGCGTGCCGAGCCGCCGATGCCATCGCAGT
CCAGGTGCTGCTAAAGGCGGGCGCAGACCCTGCACTCGAGGACAACATGG
GGCTCTCCCCTCTCGAGGTCGCCGTGCTGCTAAAGGCGGGCGCAGACCCT
GCACTCGAGGACAACATGGGGCTCTCCCCTCTCGAGGTCGCC
back to top