mRNA_S-ischiensis_contig105.1831.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig105.1831.1
Unique NamemRNA_S-ischiensis_contig105.1831.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig105.1831.1 vs. uniprot
Match: A0A6H5KYM4_9PHAE (MYB protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYM4_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 8.510e-6
Identity = 32/62 (51.61%), Postives = 39/62 (62.90%), Query Frame = 2 
Query: 1238 VATPCSGSKFRSCPQDEDSDYDDYDEYCAVKPTPVRHAGISLCGRPSAQPFLGAASKRLFGD 1423
            + TPCSGSKFRS   DE+SDY DY+ YC+VKPTP +     +   PSA       +KRLF D
Sbjct: 1079 MGTPCSGSKFRSADDDEESDYSDYETYCSVKPTPTKR----VLSPPSA-------TKRLFAD 1129
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BLAST of mRNA_S-ischiensis_contig105.1831.1 vs. uniprot
Match: D7G7U2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U2_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.220e-5
Identity = 32/62 (51.61%), Postives = 39/62 (62.90%), Query Frame = 2 
Query: 1238 VATPCSGSKFRSCPQDEDSDYDDYDEYCAVKPTPVRHAGISLCGRPSAQPFLGAASKRLFGD 1423
            + TPCSGSKFRS   DE+SDY DY+ YC+VKPTP +     +   PSA       +KRLF D
Sbjct:  631 MGTPCSGSKFRSADDDEESDYSDYETYCSVKPTPSKR----VLSPPSA-------TKRLFAD 681
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig105.1831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYM4_9PHAE8.510e-651.61MYB protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP... [more]
D7G7U2_ECTSI1.220e-551.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig105contigS-ischiensis_contig105:81435..84376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-06_000290.1
Exons2
Model size2474
Cds size1371
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig105.1831.1prot_S-ischiensis_contig105.1831.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig105 81520..83358 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815563.0034714-UTR-S-ischiensis_contig105:81434..815191622815563.0034714-UTR-S-ischiensis_contig105:81434..81519Schizocladia ischiensis KU_0333UTRS-ischiensis_contig105 81435..81519 +
1695739772.269914-UTR-S-ischiensis_contig105:81434..815191695739772.269914-UTR-S-ischiensis_contig105:81434..81519Schizocladia ischiensis KU_0333UTRS-ischiensis_contig105 81435..81519 +
1622815563.036341-UTR-S-ischiensis_contig105:83358..843761622815563.036341-UTR-S-ischiensis_contig105:83358..84376Schizocladia ischiensis KU_0333UTRS-ischiensis_contig105 83359..84376 +
1695739772.2954714-UTR-S-ischiensis_contig105:83358..843761695739772.2954714-UTR-S-ischiensis_contig105:83358..84376Schizocladia ischiensis KU_0333UTRS-ischiensis_contig105 83359..84376 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815563.0146372-CDS-S-ischiensis_contig105:81519..827471622815563.0146372-CDS-S-ischiensis_contig105:81519..82747Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 81520..82747 +
1695739772.2784998-CDS-S-ischiensis_contig105:81519..827471695739772.2784998-CDS-S-ischiensis_contig105:81519..82747Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 81520..82747 +
1622815563.0259728-CDS-S-ischiensis_contig105:83215..833581622815563.0259728-CDS-S-ischiensis_contig105:83215..83358Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 83216..83358 +
1695739772.2868488-CDS-S-ischiensis_contig105:83215..833581695739772.2868488-CDS-S-ischiensis_contig105:83215..83358Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 83216..83358 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig105.1831.1

>prot_S-ischiensis_contig105.1831.1 ID=prot_S-ischiensis_contig105.1831.1|Name=mRNA_S-ischiensis_contig105.1831.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=457bp
MRLKLMAGGCWVRTVASSPGPGCVASSANGVLRTSLPGEDAAASTSATPA
PSAATRTSASTPGGGISDKQLPPASPLLLAAASGSEATTEAPPPRAPACI
QCGPSSGPPGSSSATCAHLPAAAESSGAGGEDARRTGWCWCWMSNSTLPW
TGDGGKGARAVPTGAEAEAEDDDDARPMARDLPMAGAVLFETPRLLAASG
NGDGGGGQDTGGSSQEECTPFSISRTRDVPCGGGGGDDGDQGYNGGRQAV
PRGGRLKEHRPGHRGAGHGDGYGGYREVMGPTDPGVRAGDRGGGGGGGGA
GDDALAPSPLVPFAMAGPRLDAVAGGPASPLKQVSLPMQRASPLTPAKRP
LCEAGTQERYPRCRPRGSRGGGGGTPAYGGSPACVATPCSGSKFRSCPQD
EDSDYDDYDEYCAVKPTPVRHAGISLCGRPSAQPFLGAASKRLFGDDPAE
LGHGQA*
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mRNA from alignment at S-ischiensis_contig105:81435..84376+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig105.1831.1 ID=mRNA_S-ischiensis_contig105.1831.1|Name=mRNA_S-ischiensis_contig105.1831.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2942bp|location=Sequence derived from alignment at S-ischiensis_contig105:81435..84376+ (Schizocladia ischiensis KU_0333)
TCAGCAGCAGGCGCCGAAGCGACTGTTGGCGGGCGCCGGCGTCGTCACGC
CCAAGGACCCTTGGGCGGACGGCGCGACGAGTGCGATGCGGCTCAAGCTC
ATGGCCGGCGGCTGCTGGGTCAGGACGGTGGCGTCGTCGCCGGGCCCAGG
TTGCGTGGCCAGCAGTGCCAACGGGGTCCTCCGCACCTCGCTGCCCGGGG
AGGACGCGGCCGCGTCGACCTCTGCCACCCCCGCCCCTTCTGCTGCCACG
CGCACCTCTGCATCTACACCTGGCGGCGGCATCTCTGATAAGCAGCTGCC
TCCTGCCAGCCCCCTGCTTCTCGCCGCGGCCAGCGGCTCGGAGGCGACAA
CGGAGGCGCCGCCGCCGCGGGCGCCGGCCTGCATCCAGTGCGGGCCGAGC
TCCGGGCCCCCGGGGTCCAGTTCTGCCACCTGTGCCCATCTGCCAGCCGC
CGCCGAGTCTTCCGGGGCCGGCGGTGAGGATGCACGACGCACGGGGTGGT
GCTGGTGCTGGATGAGCAATTCCACTCTGCCCTGGACCGGGGATGGGGGC
AAGGGGGCGCGGGCTGTGCCGACCGGAGCTGAGGCCGAGGCTGAGGATGA
TGATGATGCCCGGCCCATGGCCCGGGACTTGCCCATGGCCGGGGCGGTAC
TGTTTGAGACGCCTCGCTTGCTGGCGGCGTCCGGGAACGGGGACGGTGGG
GGCGGTCAGGACACGGGGGGCAGTAGCCAGGAGGAATGCACGCCCTTCTC
GATATCCAGGACGAGGGACGTTCCTTGCGGCGGCGGCGGCGGCGACGACG
GTGACCAGGGCTACAACGGTGGCAGGCAGGCCGTGCCACGGGGGGGGCGA
CTGAAGGAGCACCGCCCGGGGCACAGGGGTGCTGGACACGGGGACGGCTA
CGGCGGCTACAGGGAGGTCATGGGTCCCACCGACCCAGGGGTAAGGGCTG
GGGACCGCGGCGGCGGCGGCGGCGGCGGCGGTGCCGGTGACGATGCCCTT
GCACCTTCGCCACTGGTCCCTTTTGCCATGGCAGGGCCACGGCTGGATGC
CGTGGCTGGCGGACCGGCTTCTCCTCTCAAACAGGTATCGCTACCCATGC
AAAGGGCATCTCCGCTGACCCCTGCCAAGCGCCCCCTGTGCGAGGCTGGC
ACCCAGGAGCGATACCCCCGCTGCCGCCCCAGGGGCAGCCGAGGCGGCGG
CGGCGGCACTCCAGCATACGGGGGCAGCCCGGCGTGCGTGGCCACCCCCT
GCAGTGGGAGCAAGTTCCGGTCTTGCCCACAGGACGAGGACTCTGACTAC
GACGATTATGATGGTGAGGAGTTCGCTGATTTACATAAGTACCACTCTCG
AGTACTTGCGTACTGTAGCGCAGCATCATCATGGCATGCCCCAGTGTACG
GCTCTCTGCATATGTATGTAGAGCTCTACACTCGTGTGTACTTGAAAGTG
TATAATACGTTGAATTTGGAGTATATATACTTCGAATTTGAAGTACTCGT
ATATATACTTCGAGTTATGTACATGTACTTTGAGGTATCCGTGTATCCCT
GCAGGCAAATCACACACCCCTGGTCAAGACACCATGCCTCCATGCACTGC
CCTTTACCCGGGCAAGTCACCGTGGGAGAGAGGACTGTCAGTGGTTCGCT
CATGTGTTGCAAAACCTCTGACCCCCTGGCCGAGGTCCCTGACGAACGTG
CCCTCCCACGCCCTTCTCCACCCCATCCCTCCCTCTGCCCGTTCTTGCCC
TGTGCCCTGCGCCCCCCATGCCACGTCCAAGAGTACTGCGCAGTGAAGCC
CACGCCGGTGAGGCACGCCGGGATCTCCCTGTGCGGGCGACCATCGGCAC
AGCCTTTCCTTGGCGCGGCCAGCAAACGCCTGTTTGGGGACGACCCTGCT
GAGCTGGGCCATGGACAGGCCTAGTGTCCTTCCAAGCATTGCTACCCCAG
TTTTAGTACTGCTAACTTACCCGAGTACTTGTACCAGACGAGGGCGGCCC
GGAGCGGGTGTCGCGATGCCACCAATTGTGGTTGGGCCATGGGACCGGGG
CATTTCTGGGCCGCGCTGCTCCCTGGGTTTCTTCACAGTGGGTACACCCG
CCGTGCAAGTGGGAGAGACCTGGGTGTGCAAGGTGTGTACTCACGTCTCT
GTGCATGCCCTGGGCCCGAACGATCCTCGTCTTTGCTCCTTCTCGTGGAT
CGCTGGCCAGCTGTAGCCGAAGCCATAGTGTGCAAGGTTAGTGTCGAATA
CAAAGGCTGCCCTTGGAAGTACTTGAGAAGTAGGGGGAGCGACCGTGGCG
AGGGTGGGCCAGCCCGTCCAGGAGGCCCAGCACAAGCGGGGGCGTGCGAG
TGACCCACGGCCTTGGCATTGTTGAAACTGTTCTGTTGGGTTGTGTGTTC
GATTGCTTCTCCTGGCGGCGGGGGCGGTCAAAGACGCAGGGCCTCGGATC
CCTACTTGCGTTTTGGAGCTCGTTCAGAAGTCGCCGTGAACAGCTGCCTT
CAGCACTGTACTGTAGTTGCCTGCTCTGAGTCACAAGAGGTAGAGTACTG
CTCATACTCTCCTGCACGTACAAAGTGGTCGTAGGTGCGCGTTTGTAGGG
CTCCGCACAGACAGCCAGGGTCTCGCCAGGGCGACGGATGGCGAGACAGT
ACACAGCTCATCCCAGCGCACCAGGCAGGGGCGGTGCTTCGCCGTGAATT
GCTTGGACAGCCTGGTGGAGTGCCAACCGTGACAACGTGGTGCCCACAAA
GGCAGCCACCAATGAATCACAGCCACGACCCCTTGTACGACTACAAGTAC
ATGTAATCACAGGCACTTGGGTACTACATATATATTGGGGCCGCGCCATA
TCTCCAATGTCCTCCAGTGCAGAGGCAGAGGGACGAGTACATGTAATCAC
AGGCACTTGGGTACTATACTGGGCGCCGTATCTCCAACGTCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig105:81435..84376+

>mRNA_S-ischiensis_contig105.1831.1 ID=mRNA_S-ischiensis_contig105.1831.1|Name=mRNA_S-ischiensis_contig105.1831.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2742bp|location=Sequence derived from alignment at S-ischiensis_contig105:81435..84376+ (Schizocladia ischiensis KU_0333)
ATGCGGCTCAAGCTCATGGCCGGCGGCTGCTGGGTCAGGACGGTGGCGTC
GTCGCCGGGCCCAGGTTGCGTGGCCAGCAGTGCCAACGGGGTCCTCCGCA
CCTCGCTGCCCGGGGAGGACGCGGCCGCGTCGACCTCTGCCACCCCCGCC
CCTTCTGCTGCCACGCGCACCTCTGCATCTACACCTGGCGGCGGCATCTC
TGATAAGCAGCTGCCTCCTGCCAGCCCCCTGCTTCTCGCCGCGGCCAGCG
GCTCGGAGGCGACAACGGAGGCGCCGCCGCCGCGGGCGCCGGCCTGCATC
CAGTGCGGGCCGAGCTCCGGGCCCCCGGGGTCCAGTTCTGCCACCTGTGC
CCATCTGCCAGCCGCCGCCGAGTCTTCCGGGGCCGGCGGTGAGGATGCAC
GACGCACGGGGTGGTGCTGGTGCTGGATGAGCAATTCCACTCTGCCCTGG
ACCGGGGATGGGGGCAAGGGGGCGCGGGCTGTGCCGACCGGAGCTGAGGC
CGAGGCTGAGGATGATGATGATGCCCGGCCCATGGCCCGGGACTTGCCCA
TGGCCGGGGCGGTACTGTTTGAGACGCCTCGCTTGCTGGCGGCGTCCGGG
AACGGGGACGGTGGGGGCGGTCAGGACACGGGGGGCAGTAGCCAGGAGGA
ATGCACGCCCTTCTCGATATCCAGGACGAGGGACGTTCCTTGCGGCGGCG
GCGGCGGCGACGACGGTGACCAGGGCTACAACGGTGGCAGGCAGGCCGTG
CCACGGGGGGGGCGACTGAAGGAGCACCGCCCGGGGCACAGGGGTGCTGG
ACACGGGGACGGCTACGGCGGCTACAGGGAGGTCATGGGTCCCACCGACC
CAGGGGTAAGGGCTGGGGACCGCGGCGGCGGCGGCGGCGGCGGCGGTGCC
GGTGACGATGCCCTTGCACCTTCGCCACTGGTCCCTTTTGCCATGGCAGG
GCCACGGCTGGATGCCGTGGCTGGCGGACCGGCTTCTCCTCTCAAACAGG
TATCGCTACCCATGCAAAGGGCATCTCCGCTGACCCCTGCCAAGCGCCCC
CTGTGCGAGGCTGGCACCCAGGAGCGATACCCCCGCTGCCGCCCCAGGGG
CAGCCGAGGCGGCGGCGGCGGCACTCCAGCATACGGGGGCAGCCCGGCGT
GCGTGGCCACCCCCTGCAGTGGGAGCAAGTTCCGGTCTTGCCCACAGGAC
GAGGACTCTGACTACGACGATTATGATGATGCGGCTCAAGCTCATGGCCG
GCGGCTGCTGGGTCAGGACGGTGGCGTCGTCGCCGGGCCCAGGTTGCGTG
GCCAGCAGTGCCAACGGGGTCCTCCGCACCTCGCTGCCCGGGGAGGACGC
GGCCGCGTCGACCTCTGCCACCCCCGCCCCTTCTGCTGCCACGCGCACCT
CTGCATCTACACCTGGCGGCGGCATCTCTGATAAGCAGCTGCCTCCTGCC
AGCCCCCTGCTTCTCGCCGCGGCCAGCGGCTCGGAGGCGACAACGGAGGC
GCCGCCGCCGCGGGCGCCGGCCTGCATCCAGTGCGGGCCGAGCTCCGGGC
CCCCGGGGTCCAGTTCTGCCACCTGTGCCCATCTGCCAGCCGCCGCCGAG
TCTTCCGGGGCCGGCGGTGAGGATGCACGACGCACGGGGTGGTGCTGGTG
CTGGATGAGCAATTCCACTCTGCCCTGGACCGGGGATGGGGGCAAGGGGG
CGCGGGCTGTGCCGACCGGAGCTGAGGCCGAGGCTGAGGATGATGATGAT
GCCCGGCCCATGGCCCGGGACTTGCCCATGGCCGGGGCGGTACTGTTTGA
GACGCCTCGCTTGCTGGCGGCGTCCGGGAACGGGGACGGTGGGGGCGGTC
AGGACACGGGGGGCAGTAGCCAGGAGGAATGCACGCCCTTCTCGATATCC
AGGACGAGGGACGTTCCTTGCGGCGGCGGCGGCGGCGACGACGGTGACCA
GGGCTACAACGGTGGCAGGCAGGCCGTGCCACGGGGGGGGCGACTGAAGG
AGCACCGCCCGGGGCACAGGGGTGCTGGACACGGGGACGGCTACGGCGGC
TACAGGGAGGTCATGGGTCCCACCGACCCAGGGGTAAGGGCTGGGGACCG
CGGCGGCGGCGGCGGCGGCGGCGGTGCCGGTGACGATGCCCTTGCACCTT
CGCCACTGGTCCCTTTTGCCATGGCAGGGCCACGGCTGGATGCCGTGGCT
GGCGGACCGGCTTCTCCTCTCAAACAGGTATCGCTACCCATGCAAAGGGC
ATCTCCGCTGACCCCTGCCAAGCGCCCCCTGTGCGAGGCTGGCACCCAGG
AGCGATACCCCCGCTGCCGCCCCAGGGGCAGCCGAGGCGGCGGCGGCGGC
ACTCCAGCATACGGGGGCAGCCCGGCGTGCGTGGCCACCCCCTGCAGTGG
GAGCAAGTTCCGGTCTTGCCCACAGGACGAGGACTCTGACTACGACGATT
ATGATGAGTACTGCGCAGTGAAGCCCACGCCGGTGAGGCACGCCGGGATC
TCCCTGTGCGGGCGACCATCGGCACAGCCTTTCCTTGGCGCGGCCAGCAA
ACGCCTGTTTGGGGACGACCCTGCTGAGCTGGGCCATGGACAGGCCTAGA
GTACTGCGCAGTGAAGCCCACGCCGGTGAGGCACGCCGGGATCTCCCTGT
GCGGGCGACCATCGGCACAGCCTTTCCTTGGCGCGGCCAGCAAACGCCTG
TTTGGGGACGACCCTGCTGAGCTGGGCCATGGACAGGCCTAG
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