mRNA_S-ischiensis_contig105.1825.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig105.1825.1
Unique NamemRNA_S-ischiensis_contig105.1825.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig105.1825.1 vs. uniprot
Match: A0A7S1V296_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V296_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.760e-7
Identity = 26/57 (45.61%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:  298 VFFSYVWPVLLSE-GWRVEKGSRQGDTHFFPPGVHRGGGFVLRRDYFDSIKKVCEMI 465
            +F++ VWP L+ E GW ++ G+R  D +F PP V R  GF  R+DYFDS+K+V +++
Sbjct:   51 LFWTLVWPRLMKEAGWTLDTGNRPTDYYFMPPNVLRHRGFSNRKDYFDSVKQVLDVL 107
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig105.1825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S1V296_9STRA1.760e-745.61Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig105contigS-ischiensis_contig105:71141..72947 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_001560.1
Exons2
Model size797
Cds size795
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815562.8989854-CDS-S-ischiensis_contig105:71141..714861622815562.8989854-CDS-S-ischiensis_contig105:71141..71486Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 71142..71486 -
1695739772.1937644-CDS-S-ischiensis_contig105:71141..714861695739772.1937644-CDS-S-ischiensis_contig105:71141..71486Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 71142..71486 -
1622815562.908787-CDS-S-ischiensis_contig105:72497..729471622815562.908787-CDS-S-ischiensis_contig105:72497..72947Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 72498..72947 -
1695739772.2092013-CDS-S-ischiensis_contig105:72497..729471695739772.2092013-CDS-S-ischiensis_contig105:72497..72947Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 72498..72947 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig105.1825.1prot_S-ischiensis_contig105.1825.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig105 71142..72947 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig105.1825.1

>prot_S-ischiensis_contig105.1825.1 ID=prot_S-ischiensis_contig105.1825.1|Name=mRNA_S-ischiensis_contig105.1825.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=265bp
ARSRARGVTSAAKAGAAKAEAEAAPEPAAAVEEGTPSAAGAGDTPKQRKR
PRSPSTALPPKAKAVRKSGGVTASPKGGGGGGGDGGAKQALPKGRAMKEV
FFSYVWPVLLSEGWRVEKGSRQGDTHFFPPGVHRGGGFVLRRDYFDSIKK
VCEMIGTERAAALLASSATATATEGQGKPTGEATPPAHASGQGTEVYHPA
SEPKSKPQHKQLKQGATAMGAASPATPVPTGRNTGAAARAVAAAAAEAEA
QAASSAMAAAPGAAR
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mRNA from alignment at S-ischiensis_contig105:71141..72947-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig105.1825.1 ID=mRNA_S-ischiensis_contig105.1825.1|Name=mRNA_S-ischiensis_contig105.1825.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1807bp|location=Sequence derived from alignment at S-ischiensis_contig105:71141..72947- (Schizocladia ischiensis KU_0333)
GCCCGCTCGCGCGCTCGTGGCGTCACTTCGGCGGCGAAGGCGGGAGCGGC
AAAGGCGGAGGCCGAGGCGGCGCCGGAGCCGGCGGCGGCTGTGGAGGAGG
GGACCCCCTCTGCCGCGGGCGCCGGGGACACCCCAAAGCAGAGGAAGCGG
CCACGGAGCCCATCCACGGCCTTGCCGCCCAAGGCCAAGGCGGTGCGAAA
GAGCGGGGGCGTGACGGCCTCTCCGAAGGGCGGCGGCGGCGGCGGCGGCG
ATGGAGGCGCTAAACAAGCACTCCCCAAAGGCCGTGCGATGAAGGAGGTG
TTCTTCTCCTATGTTTGGCCGGTGCTGCTCAGTGAGGGATGGAGAGTGGA
GAAGGGGTCTCGCCAGGGCGACACTCACTTCTTCCCCCCGGGGGTGCACA
GGGGGGGCGGGTTTGTGCTGCGGAGGGACTACTTTGACTCCATCAAGAAG
GTGCGGTAGCGTGTGTGCACTCGTTGTCTTGCTTGTACGCCGCCTTTCGA
CGCACCCGGCTTTCACATGGCCGACTGCCCCCCGAGGTGCGGCATATGCG
CAGGGGTAGTGATTTCGGCGTTGCGCCAAGTGTATGTACTAAGATCCTAA
TCGAGTAAACGAGTACTCGTACTGTACATATGTACGAAGTATATCTATAT
GTATATATGTACTCACGTGGTGCTTGCCGTAGTCCCGAGACCATTGACCA
CGCGCCTCGTTCGAGACGGAGCAGGATAATCGATATACTTCGAAGTACTA
CGTAGTGTATATATATATGTAGTTGTACCGATGCAGCACGAAATGTGCGT
GCGCTGGCGTCTCCGTGCTGCAGTCTCTCGGTAGCAAGCGGCCTGATTTC
GGGCCCTCTGTATTGTGAGGTGGGCGCGTCGTTTTGTCCCACCTCTCTGC
CTGTGTTTGCATTGGCTGGATTCTATGCAATGCGAGGCCAATGGCCAAAA
CGCCACCCTGCGGGGGCTGGCCGGCGGTCCAGCACATAGTGTACTGTGGC
GACGGTCGGTGGCATGCACAGGATGCGGTGTCCCCTGTCCGACATAAGTA
CACACTACGTATGTAGTACACTTGGTAGTTAGGCGGGTTTCAAGAGTTTC
TGCACCTGACGTTCAGGTGGGGCCGGCTGCCCGTTTTGTGCGCTGCTCTT
GGGATGGCACTTAGTGATGTGATTGGGTTGCACGCACGAAGGTGGTCATG
TACTTTCGAAGGAGCACAGTTTACAGGGAATTCCCTTCCACGTCGAAACG
AGTGGGAGTACCACGTACTTCGTACTTGTTTGAATAGTACGAGTACTCAC
ATGCTACTCCACTACAGTACCCACATACTACTGACACTTGGTACCGGCTG
CACCGACACGTGCACACACACGCACGCACGCACACACACACACACACACA
CACGCACGCACACGCACGCATACACCTCCCACATCTCGGGCACATCTTCC
CTGCCGAACAGGTGTGCGAAATGATCGGGACGGAGCGAGCCGCCGCCCTC
CTCGCAAGCTCCGCCACCGCCACCGCCACCGAGGGGCAGGGGAAGCCCAC
GGGCGAGGCAACCCCGCCCGCACACGCCTCTGGCCAAGGCACCGAGGTGT
ATCATCCCGCTTCCGAGCCCAAGTCCAAGCCCCAGCACAAACAGCTCAAG
CAGGGCGCGACAGCCATGGGGGCGGCCTCCCCGGCCACCCCTGTGCCCAC
CGGCCGCAACACGGGGGCGGCGGCTCGAGCGGTTGCGGCGGCGGCTGCAG
AGGCGGAGGCGCAGGCGGCGTCGAGCGCCATGGCCGCCGCCCCTGGTGCC
GCCCGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig105:71141..72947-

>mRNA_S-ischiensis_contig105.1825.1 ID=mRNA_S-ischiensis_contig105.1825.1|Name=mRNA_S-ischiensis_contig105.1825.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1590bp|location=Sequence derived from alignment at S-ischiensis_contig105:71141..72947- (Schizocladia ischiensis KU_0333)
GCCCGCTCGCGCGCTCGTGGCGTCACTTCGGCGGCGAAGGCGGGAGCGGC
AAAGGCGGAGGCCGAGGCGGCGCCGGAGCCGGCGGCGGCTGTGGAGGAGG
GGACCCCCTCTGCCGCGGGCGCCGGGGACACCCCAAAGCAGAGGAAGCGG
CCACGGAGCCCATCCACGGCCTTGCCGCCCAAGGCCAAGGCGGTGCGAAA
GAGCGGGGGCGTGACGGCCTCTCCGAAGGGCGGCGGCGGCGGCGGCGGCG
ATGGAGGCGCTAAACAAGCACTCCCCAAAGGCCGTGCGATGAAGGAGGTG
TTCTTCTCCTATGTTTGGCCGGTGCTGCTCAGTGAGGGATGGAGAGTGGA
GAAGGGGTCTCGCCAGGGCGACACTCACTTCTTCCCCCCGGGGGTGCACA
GGGGGGGCGGGTTTGTGCTGCGGAGGGACTACTTTGACTCCATCAAGAAG
GCCCGCTCGCGCGCTCGTGGCGTCACTTCGGCGGCGAAGGCGGGAGCGGC
AAAGGCGGAGGCCGAGGCGGCGCCGGAGCCGGCGGCGGCTGTGGAGGAGG
GGACCCCCTCTGCCGCGGGCGCCGGGGACACCCCAAAGCAGAGGAAGCGG
CCACGGAGCCCATCCACGGCCTTGCCGCCCAAGGCCAAGGCGGTGCGAAA
GAGCGGGGGCGTGACGGCCTCTCCGAAGGGCGGCGGCGGCGGCGGCGGCG
ATGGAGGCGCTAAACAAGCACTCCCCAAAGGCCGTGCGATGAAGGAGGTG
TTCTTCTCCTATGTTTGGCCGGTGCTGCTCAGTGAGGGATGGAGAGTGGA
GAAGGGGTCTCGCCAGGGCGACACTCACTTCTTCCCCCCGGGGGTGCACA
GGGGGGGCGGGTTTGTGCTGCGGAGGGACTACTTTGACTCCATCAAGAAG
GTGTGCGAAATGATCGGGACGGAGCGAGCCGCCGCCCTCCTCGCAAGCTC
CGCCACCGCCACCGCCACCGAGGGGCAGGGGAAGCCCACGGGCGAGGCAA
CCCCGCCCGCACACGCCTCTGGCCAAGGCACCGAGGTGTATCATCCCGCT
TCCGAGCCCAAGTCCAAGCCCCAGCACAAACAGCTCAAGCAGGGCGCGAC
AGCCATGGGGGCGGCCTCCCCGGCCACCCCTGTGCCCACCGGCCGCAACA
CGGGGGCGGCGGCTCGAGCGGTTGCGGCGGCGGCTGCAGAGGCGGAGGCG
CAGGCGGCGTCGAGCGCCATGGCCGCCGCCCCTGGTGCCGCCCGCGTGTG
CGAAATGATCGGGACGGAGCGAGCCGCCGCCCTCCTCGCAAGCTCCGCCA
CCGCCACCGCCACCGAGGGGCAGGGGAAGCCCACGGGCGAGGCAACCCCG
CCCGCACACGCCTCTGGCCAAGGCACCGAGGTGTATCATCCCGCTTCCGA
GCCCAAGTCCAAGCCCCAGCACAAACAGCTCAAGCAGGGCGCGACAGCCA
TGGGGGCGGCCTCCCCGGCCACCCCTGTGCCCACCGGCCGCAACACGGGG
GCGGCGGCTCGAGCGGTTGCGGCGGCGGCTGCAGAGGCGGAGGCGCAGGC
GGCGTCGAGCGCCATGGCCGCCGCCCCTGGTGCCGCCCGC
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