mRNA_S-ischiensis_contig105.1822.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig105.1822.1
Unique NamemRNA_S-ischiensis_contig105.1822.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig105.1822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig105contigS-ischiensis_contig105:40479..41530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size1052
Cds size639
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig105.1822.1prot_S-ischiensis_contig105.1822.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig105 40746..41384 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815563.6301622-UTR-S-ischiensis_contig105:40478..407451622815563.6301622-UTR-S-ischiensis_contig105:40478..40745Schizocladia ischiensis KU_0333UTRS-ischiensis_contig105 40479..40745 +
1695739772.5700521-UTR-S-ischiensis_contig105:40478..407451695739772.5700521-UTR-S-ischiensis_contig105:40478..40745Schizocladia ischiensis KU_0333UTRS-ischiensis_contig105 40479..40745 +
1622815563.6537423-UTR-S-ischiensis_contig105:41384..415301622815563.6537423-UTR-S-ischiensis_contig105:41384..41530Schizocladia ischiensis KU_0333UTRS-ischiensis_contig105 41385..41530 +
1695739772.5916336-UTR-S-ischiensis_contig105:41384..415301695739772.5916336-UTR-S-ischiensis_contig105:41384..41530Schizocladia ischiensis KU_0333UTRS-ischiensis_contig105 41385..41530 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815563.6406507-CDS-S-ischiensis_contig105:40745..413841622815563.6406507-CDS-S-ischiensis_contig105:40745..41384Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 40746..41384 +
1695739772.5824926-CDS-S-ischiensis_contig105:40745..413841695739772.5824926-CDS-S-ischiensis_contig105:40745..41384Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 40746..41384 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig105.1822.1

>prot_S-ischiensis_contig105.1822.1 ID=prot_S-ischiensis_contig105.1822.1|Name=mRNA_S-ischiensis_contig105.1822.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=213bp
MVGLARRLLACLGACLLGVVIKMDCTGELGTLGRGTPPLFCRPRPLWTSY
FLPTLGGVGCLDLVLNLLSCCTLACVCCLQAVCSAARVGGGLGAAVRASC
AVYFSVLAGLVWGLLACCGVCLLGALNGMHCSGHLGTLRRGTPPLFCRPR
PVQTSCFLPNLGGVGCLDLELTLSSCYTLACVCCLRAVFSTVWVRGGLGA
FVPASAACCRCP*
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mRNA from alignment at S-ischiensis_contig105:40479..41530+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig105.1822.1 ID=mRNA_S-ischiensis_contig105.1822.1|Name=mRNA_S-ischiensis_contig105.1822.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1052bp|location=Sequence derived from alignment at S-ischiensis_contig105:40479..41530+ (Schizocladia ischiensis KU_0333)
TCCGCGTGGCCCGGATTCAGCCTGGTTGGGGACTCCCGGGTCTCCTGGGC
CTCGTTTGGAACTCGTGGGCCCCGTGGTGGGCGGCGGCATGGCGCGGCGG
CTTCCGGACCCGGCCTGGTGGGTGACTGCCAGGTACCCCGGAATTCGCTT
GCCCTGCGCCCTGCGGAGCCTGGACTCGGCCTGGTGGGCGACTCCCGGGT
CTCCCAGGGTCCTCTTGGCGCTCGTGGGCCCCTTTGTGGGTGGCCGCGGG
CCGCTCCTGCGCTGGCTATGGTAGGCTTGGCGCGGAGGCTGCTGGCCTGC
CTTGGCGCGTGCTTGCTGGGAGTGGTGATCAAGATGGACTGCACCGGGGA
ACTAGGGACACTTGGACGGGGGACACCCCCTCTATTCTGCAGGCCTCGGC
CGTTGTGGACTAGCTACTTTTTGCCCACCCTGGGGGGCGTCGGGTGTCTG
GATCTGGTGCTTAATCTGCTGTCTTGCTGTACTCTTGCGTGTGTGTGCTG
CTTGCAGGCTGTGTGTTCGGCTGCGCGTGTGGGTGGCGGCCTTGGTGCCG
CTGTGCGTGCTTCTTGTGCTGTGTACTTTTCTGTGTTGGCTGGCTTGGTG
TGGGGACTGCTGGCCTGCTGCGGTGTGTGCTTGCTGGGGGCGCTGAACGG
GATGCACTGCTCCGGGCATCTAGGGACACTTAGACGGGGGACACCCCCTC
TATTCTGCAGGCCTCGGCCCGTGCAGACTAGCTGTTTTTTACCCAACCTG
GGGGGGGTCGGGTGTCTAGATCTGGAGCTTACTCTGTCATCTTGCTATAC
TCTTGCTTGTGTATGCTGCTTGCGGGCTGTGTTCTCCACTGTGTGGGTGC
GTGGAGGCCTTGGTGCCTTCGTGCCTGCGTCGGCTGCTTGCTGCCGCTGC
CCTTAGAGGCAGTCGGTGTCTGCTCTTGACTTTGGCCACACGTTAACCCA
CACCGATCATTGTGTCGGGTAATGATAATCAATATACAAACTAAGCAATG
TAACTGTACGGTCAAAACTACCGAGCCACACTAGAATGGTTGGGTTGCGG
CC
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Coding sequence (CDS) from alignment at S-ischiensis_contig105:40479..41530+

>mRNA_S-ischiensis_contig105.1822.1 ID=mRNA_S-ischiensis_contig105.1822.1|Name=mRNA_S-ischiensis_contig105.1822.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1278bp|location=Sequence derived from alignment at S-ischiensis_contig105:40479..41530+ (Schizocladia ischiensis KU_0333)
ATGGTAGGCTTGGCGCGGAGGCTGCTGGCCTGCCTTGGCGCGTGCTTGCT
GGGAGTGGTGATCAAGATGGACTGCACCGGGGAACTAGGGACACTTGGAC
GGGGGACACCCCCTCTATTCTGCAGGCCTCGGCCGTTGTGGACTAGCTAC
TTTTTGCCCACCCTGGGGGGCGTCGGGTGTCTGGATCTGGTGCTTAATCT
GCTGTCTTGCTGTACTCTTGCGTGTGTGTGCTGCTTGCAGGCTGTGTGTT
CGGCTGCGCGTGTGGGTGGCGGCCTTGGTGCCGCTGTGCGTGCTTCTTGT
GCTGTGTACTTTTCTGTGTTGGCTGGCTTGGTGTGGGGACTGCTGGCCTG
CTGCGGTGTGTGCTTGCTGGGGGCGCTGAACGGGATGCACTGCTCCGGGC
ATCTAGGGACACTTAGACGGGGGACACCCCCTCTATTCTGCAGGCCTCGG
CCCGTGCAGACTAGCTGTTTTTTACCCAACCTGGGGGGGGTCGGGTGTCT
AGATCTGGAGCTTACTCTGTCATCTTGCTATACTCTTGCTTGTGTATGCT
GCTTGCGGGCTGTGTTCTCCACTGTGTGGGTGCGTGGAGGCCTTGGTGCC
TTCGTGCCTGCGTCGGCTGCTTGCTGCCGCTGCCCTTAGATGGTAGGCTT
GGCGCGGAGGCTGCTGGCCTGCCTTGGCGCGTGCTTGCTGGGAGTGGTGA
TCAAGATGGACTGCACCGGGGAACTAGGGACACTTGGACGGGGGACACCC
CCTCTATTCTGCAGGCCTCGGCCGTTGTGGACTAGCTACTTTTTGCCCAC
CCTGGGGGGCGTCGGGTGTCTGGATCTGGTGCTTAATCTGCTGTCTTGCT
GTACTCTTGCGTGTGTGTGCTGCTTGCAGGCTGTGTGTTCGGCTGCGCGT
GTGGGTGGCGGCCTTGGTGCCGCTGTGCGTGCTTCTTGTGCTGTGTACTT
TTCTGTGTTGGCTGGCTTGGTGTGGGGACTGCTGGCCTGCTGCGGTGTGT
GCTTGCTGGGGGCGCTGAACGGGATGCACTGCTCCGGGCATCTAGGGACA
CTTAGACGGGGGACACCCCCTCTATTCTGCAGGCCTCGGCCCGTGCAGAC
TAGCTGTTTTTTACCCAACCTGGGGGGGGTCGGGTGTCTAGATCTGGAGC
TTACTCTGTCATCTTGCTATACTCTTGCTTGTGTATGCTGCTTGCGGGCT
GTGTTCTCCACTGTGTGGGTGCGTGGAGGCCTTGGTGCCTTCGTGCCTGC
GTCGGCTGCTTGCTGCCGCTGCCCTTAG
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