mRNA_S-ischiensis_contig105.1820.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig105.1820.1
Unique NamemRNA_S-ischiensis_contig105.1820.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig105.1820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig105contigS-ischiensis_contig105:29238..29941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size704
Cds size453
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig105.1820.1prot_S-ischiensis_contig105.1820.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig105 29257..29709 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815563.4459136-UTR-S-ischiensis_contig105:29237..292561622815563.4459136-UTR-S-ischiensis_contig105:29237..29256Schizocladia ischiensis KU_0333UTRS-ischiensis_contig105 29238..29256 +
1695739772.528548-UTR-S-ischiensis_contig105:29237..292561695739772.528548-UTR-S-ischiensis_contig105:29237..29256Schizocladia ischiensis KU_0333UTRS-ischiensis_contig105 29238..29256 +
1622815563.4997652-UTR-S-ischiensis_contig105:29709..299411622815563.4997652-UTR-S-ischiensis_contig105:29709..29941Schizocladia ischiensis KU_0333UTRS-ischiensis_contig105 29710..29941 +
1695739772.5488281-UTR-S-ischiensis_contig105:29709..299411695739772.5488281-UTR-S-ischiensis_contig105:29709..29941Schizocladia ischiensis KU_0333UTRS-ischiensis_contig105 29710..29941 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815563.4860518-CDS-S-ischiensis_contig105:29256..297091622815563.4860518-CDS-S-ischiensis_contig105:29256..29709Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 29257..29709 +
1695739772.538893-CDS-S-ischiensis_contig105:29256..297091695739772.538893-CDS-S-ischiensis_contig105:29256..29709Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 29257..29709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig105.1820.1

>prot_S-ischiensis_contig105.1820.1 ID=prot_S-ischiensis_contig105.1820.1|Name=mRNA_S-ischiensis_contig105.1820.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=151bp
MKLLGKVLASACNLHSQTEVLASAYNLHSPADLSPLAEVGACLGVPELVC
RASGLLPQEEYLEVILALPLRPEPGEIWSGRTQAELPACLPACAELSNCP
LAAAPERRGPGRSDLGVFLYEAAVTDSAWRFNSCLRRHSRINSFAEYTQV
*
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mRNA from alignment at S-ischiensis_contig105:29238..29941+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig105.1820.1 ID=mRNA_S-ischiensis_contig105.1820.1|Name=mRNA_S-ischiensis_contig105.1820.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=704bp|location=Sequence derived from alignment at S-ischiensis_contig105:29238..29941+ (Schizocladia ischiensis KU_0333)
CAAAGTGCGAGTACGGTTGATGAAGCTGCTGGGTAAGGTGCTTGCAAGTG
CATGTAACCTACATTCGCAGACGGAGGTGCTTGCAAGTGCATATAACCTA
CATTCACCGGCCGACCTGTCACCTCTTGCGGAAGTTGGGGCGTGCCTTGG
GGTTCCCGAGTTGGTGTGTCGAGCCTCAGGCTTGTTGCCGCAAGAAGAAT
ACTTGGAAGTAATTCTTGCCTTGCCTCTCAGGCCCGAGCCTGGGGAGATT
TGGAGTGGGAGGACGCAAGCTGAGCTGCCTGCCTGCCTGCCTGCCTGCGC
AGAGCTTTCAAATTGCCCGCTGGCGGCGGCCCCTGAGCGGCGCGGGCCGG
GCCGGTCTGACTTGGGGGTATTCCTGTACGAGGCCGCAGTAACTGACTCG
GCATGGAGGTTCAACAGCTGCCTTCGCAGACACTCACGCATCAACTCTTT
CGCAGAGTATACCCAGGTTTGATCCGTGGGGTCCGAGTAGGTACTTTCAA
AATTGGAAATGCCGCGGGGATGTTCTTGGCTGCACTGTGCACTTGTGGTG
CGGGCCTTCAAGTTGGCGAATCTGCCTGGCCCATGCGCTGGCATGACTTT
TGCTGCTGTCTGCCTTGTACGAGCGTATCTTGGGCAGGCCCGGCCTGTGC
CCGGGCCGGGCCGTGAGACGTGACCGCGACCGTCGTGAAGGCCACTGCAA
GCAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig105:29238..29941+

>mRNA_S-ischiensis_contig105.1820.1 ID=mRNA_S-ischiensis_contig105.1820.1|Name=mRNA_S-ischiensis_contig105.1820.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=906bp|location=Sequence derived from alignment at S-ischiensis_contig105:29238..29941+ (Schizocladia ischiensis KU_0333)
ATGAAGCTGCTGGGTAAGGTGCTTGCAAGTGCATGTAACCTACATTCGCA
GACGGAGGTGCTTGCAAGTGCATATAACCTACATTCACCGGCCGACCTGT
CACCTCTTGCGGAAGTTGGGGCGTGCCTTGGGGTTCCCGAGTTGGTGTGT
CGAGCCTCAGGCTTGTTGCCGCAAGAAGAATACTTGGAAGTAATTCTTGC
CTTGCCTCTCAGGCCCGAGCCTGGGGAGATTTGGAGTGGGAGGACGCAAG
CTGAGCTGCCTGCCTGCCTGCCTGCCTGCGCAGAGCTTTCAAATTGCCCG
CTGGCGGCGGCCCCTGAGCGGCGCGGGCCGGGCCGGTCTGACTTGGGGGT
ATTCCTGTACGAGGCCGCAGTAACTGACTCGGCATGGAGGTTCAACAGCT
GCCTTCGCAGACACTCACGCATCAACTCTTTCGCAGAGTATACCCAGGTT
TGAATGAAGCTGCTGGGTAAGGTGCTTGCAAGTGCATGTAACCTACATTC
GCAGACGGAGGTGCTTGCAAGTGCATATAACCTACATTCACCGGCCGACC
TGTCACCTCTTGCGGAAGTTGGGGCGTGCCTTGGGGTTCCCGAGTTGGTG
TGTCGAGCCTCAGGCTTGTTGCCGCAAGAAGAATACTTGGAAGTAATTCT
TGCCTTGCCTCTCAGGCCCGAGCCTGGGGAGATTTGGAGTGGGAGGACGC
AAGCTGAGCTGCCTGCCTGCCTGCCTGCCTGCGCAGAGCTTTCAAATTGC
CCGCTGGCGGCGGCCCCTGAGCGGCGCGGGCCGGGCCGGTCTGACTTGGG
GGTATTCCTGTACGAGGCCGCAGTAACTGACTCGGCATGGAGGTTCAACA
GCTGCCTTCGCAGACACTCACGCATCAACTCTTTCGCAGAGTATACCCAG
GTTTGA
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