mRNA_S-ischiensis_contig104.1815.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig104.1815.1
Unique NamemRNA_S-ischiensis_contig104.1815.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig104.1815.1 vs. uniprot
Match: A0A6H5J9U1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9U1_9PHAE)

HSP 1 Score: 259 bits (661), Expect = 3.240e-85
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1 
Query:  154 MGLAFSRLWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRESILLVFANKQV 540
            MGLAFSRLWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRESILLVFANKQV
Sbjct:    1 MGLAFSRLWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRESILLVFANKQV 129
[Close]
BLAST of mRNA_S-ischiensis_contig104.1815.1 vs. uniprot
Match: A0A7S2W572_9STRA (ADP-ribosylation factor n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W572_9STRA)

HSP 1 Score: 252 bits (643), Expect = 7.540e-82
Identity = 124/138 (89.86%), Postives = 131/138 (94.93%), Query Frame = 1 
Query:  136 LHPRG----TMGLAFSRLWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRESILLVFANKQ 537
            +HPR      MGL FSR+W+RMFG++EMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEY+NISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDR+DAARDELHRMLNEDELRESILLVFANKQ
Sbjct:    5 VHPRPPPVPAMGLTFSRIWDRMFGRREMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYRNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRIDAARDELHRMLNEDELRESILLVFANKQ 142
[Close]
BLAST of mRNA_S-ischiensis_contig104.1815.1 vs. uniprot
Match: A0A5D6YTC8_9STRA (ADP-ribosylation factor n=3 Tax=Stramenopiles TaxID=33634 RepID=A0A5D6YTC8_9STRA)

HSP 1 Score: 249 bits (636), Expect = 3.180e-81
Identity = 123/128 (96.09%), Postives = 128/128 (100.00%), Query Frame = 1 
Query:  154 MGLAFSRLWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRESILLVFANKQ 537
            MG+AFSR++ER+FGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELR+SILLVFANKQ
Sbjct:    1 MGMAFSRVFERLFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRDSILLVFANKQ 128
[Close]
BLAST of mRNA_S-ischiensis_contig104.1815.1 vs. uniprot
Match: K3WYT4_GLOUD (ADP-ribosylation factor n=30 Tax=Stramenopiles TaxID=33634 RepID=K3WYT4_GLOUD)

HSP 1 Score: 249 bits (636), Expect = 5.270e-81
Identity = 123/128 (96.09%), Postives = 128/128 (100.00%), Query Frame = 1 
Query:  154 MGLAFSRLWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRESILLVFANKQ 537
            MG+AFSR++ER+FGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELR+SILLVFANKQ
Sbjct:    1 MGMAFSRVFERLFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRDSILLVFANKQ 128
[Close]
BLAST of mRNA_S-ischiensis_contig104.1815.1 vs. uniprot
Match: M4BN95_HYAAE (ADP-ribosylation factor n=8 Tax=Oomycota TaxID=4762 RepID=M4BN95_HYAAE)

HSP 1 Score: 249 bits (635), Expect = 7.470e-81
Identity = 122/128 (95.31%), Postives = 128/128 (100.00%), Query Frame = 1 
Query:  154 MGLAFSRLWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRESILLVFANKQ 537
            MG+AFSR++ER+FGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELR+S+LLVFANKQ
Sbjct:    1 MGMAFSRVFERLFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRDSVLLVFANKQ 128
[Close]
BLAST of mRNA_S-ischiensis_contig104.1815.1 vs. uniprot
Match: A0A0P1B1D9_PLAHL (Adp-ribosylation factor n=17 Tax=Peronosporaceae TaxID=4777 RepID=A0A0P1B1D9_PLAHL)

HSP 1 Score: 249 bits (635), Expect = 1.560e-80
Identity = 122/128 (95.31%), Postives = 128/128 (100.00%), Query Frame = 1 
Query:  154 MGLAFSRLWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRESILLVFANKQ 537
            MG+AFSR++ER+FGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELR+S+LLVFANKQ
Sbjct:    1 MGMAFSRVFERLFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRDSVLLVFANKQ 128
[Close]
BLAST of mRNA_S-ischiensis_contig104.1815.1 vs. uniprot
Match: B8BS84_THAPS (ADP-ribosylation factor n=39 Tax=Eukaryota TaxID=2759 RepID=B8BS84_THAPS)

HSP 1 Score: 246 bits (627), Expect = 1.310e-79
Identity = 120/128 (93.75%), Postives = 126/128 (98.44%), Query Frame = 1 
Query:  154 MGLAFSRLWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRESILLVFANKQ 537
            MGL FSRL+ERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSND DR+DAARDE+HRMLNEDELR+++LLVFANKQ
Sbjct:    1 MGLTFSRLFERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDSDRIDAARDEMHRMLNEDELRDAVLLVFANKQ 128
[Close]
BLAST of mRNA_S-ischiensis_contig104.1815.1 vs. uniprot
Match: F0WK01_9STRA (ADPribosylation factor family putative n=12 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WK01_9STRA)

HSP 1 Score: 245 bits (626), Expect = 2.480e-77
Identity = 119/128 (92.97%), Postives = 127/128 (99.22%), Query Frame = 1 
Query:  154 MGLAFSRLWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRESILLVFANKQ 537
            MG+AFSR++ER+FGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDR++A RDELHRMLNEDELR+SILL+FANKQ
Sbjct:    1 MGMAFSRVFERLFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRIEATRDELHRMLNEDELRDSILLIFANKQ 128
[Close]
BLAST of mRNA_S-ischiensis_contig104.1815.1 vs. uniprot
Match: A0A5B6YXL1_DAVIN (Putative ADP-ribosylation factor n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B6YXL1_DAVIN)

HSP 1 Score: 238 bits (607), Expect = 3.630e-77
Identity = 117/138 (84.78%), Postives = 128/138 (92.75%), Query Frame = 1 
Query:  154 MGLAFSRLWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRESILLVFANKQVRSPALPPHV 567
            MGL+F++L+ R+F KKEMRILMVGLDAAGKTTILYKLKLGE+VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHY+QNTQGLIFVVDSNDRDRV  ARDELHRMLNEDELR+++LLVFANKQ  S   P H+
Sbjct:    1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQXTSLVYPEHM 138
[Close]
BLAST of mRNA_S-ischiensis_contig104.1815.1 vs. uniprot
Match: A0A7S0J417_9EUKA (ADP-ribosylation factor n=2 Tax=Prymnesiophyceae TaxID=2608131 RepID=A0A7S0J417_9EUKA)

HSP 1 Score: 239 bits (610), Expect = 8.270e-77
Identity = 116/130 (89.23%), Postives = 126/130 (96.92%), Query Frame = 1 
Query:  148 GTMGLAFSRLWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRESILLVFANKQ 537
            GTMGL FS+++ ++FGKK++RILMVGLDAAGKTTILYKLKLGE+VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQG+IFVVDSNDRDRV  ARDELHRMLNEDELRE+ILLVFANKQ
Sbjct:   16 GTMGLTFSKVFGKLFGKKDVRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGVIFVVDSNDRDRVGEARDELHRMLNEDELREAILLVFANKQ 145
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig104.1815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J9U1_9PHAE3.240e-85100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2W572_9STRA7.540e-8289.86ADP-ribosylation factor n=2 Tax=Rhizochromulina ma... [more]
A0A5D6YTC8_9STRA3.180e-8196.09ADP-ribosylation factor n=3 Tax=Stramenopiles TaxI... [more]
K3WYT4_GLOUD5.270e-8196.09ADP-ribosylation factor n=30 Tax=Stramenopiles Tax... [more]
M4BN95_HYAAE7.470e-8195.31ADP-ribosylation factor n=8 Tax=Oomycota TaxID=476... [more]
A0A0P1B1D9_PLAHL1.560e-8095.31Adp-ribosylation factor n=17 Tax=Peronosporaceae T... [more]
B8BS84_THAPS1.310e-7993.75ADP-ribosylation factor n=39 Tax=Eukaryota TaxID=2... [more]
F0WK01_9STRA2.480e-7792.97ADPribosylation factor family putative n=12 Tax=Al... [more]
A0A5B6YXL1_DAVIN3.630e-7784.78Putative ADP-ribosylation factor n=1 Tax=Davidia i... [more]
A0A7S0J417_9EUKA8.270e-7789.23ADP-ribosylation factor n=2 Tax=Prymnesiophyceae T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig104contigS-ischiensis_contig104:307085..310793 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score260.4
Seed ortholog evalue6.6e-67
Seed eggNOG ortholog2880.D7FGX4
Preferred nameArf1
KEGG koko:K07937,ko:K07977
KEGG Pathwayko04072,ko04144,ko05110,ko05134,map04072,map04144,map05110,map05134
EggNOG free text desc.GTP binding
EggNOG OGsCOG1100@1,KOG0070@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons3
Model size721
Cds size567
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig104.1815.1prot_S-ischiensis_contig104.1815.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig104 307085..310640 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815562.5778441-CDS-S-ischiensis_contig104:307084..3074581622815562.5778441-CDS-S-ischiensis_contig104:307084..307458Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 307085..307458 -
1695739771.8973696-CDS-S-ischiensis_contig104:307084..3074581695739771.8973696-CDS-S-ischiensis_contig104:307084..307458Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 307085..307458 -
1622815562.5878212-CDS-S-ischiensis_contig104:310077..3102041622815562.5878212-CDS-S-ischiensis_contig104:310077..310204Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 310078..310204 -
1695739771.9833844-CDS-S-ischiensis_contig104:310077..3102041695739771.9833844-CDS-S-ischiensis_contig104:310077..310204Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 310078..310204 -
1622815562.5971317-CDS-S-ischiensis_contig104:310574..3106401622815562.5971317-CDS-S-ischiensis_contig104:310574..310640Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 310575..310640 -
1695739772.001336-CDS-S-ischiensis_contig104:310574..3106401695739772.001336-CDS-S-ischiensis_contig104:310574..310640Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 310575..310640 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815562.6093946-UTR-S-ischiensis_contig104:310640..3107931622815562.6093946-UTR-S-ischiensis_contig104:310640..310793Schizocladia ischiensis KU_0333UTRS-ischiensis_contig104 310641..310793 -
1695739772.0132897-UTR-S-ischiensis_contig104:310640..3107931695739772.0132897-UTR-S-ischiensis_contig104:310640..310793Schizocladia ischiensis KU_0333UTRS-ischiensis_contig104 310641..310793 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig104.1815.1

>prot_S-ischiensis_contig104.1815.1 ID=prot_S-ischiensis_contig104.1815.1|Name=mRNA_S-ischiensis_contig104.1815.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=189bp
MGLAFSRLWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIG
FNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRV
DAARDELHRMLNEDELRESILLVFANKQVRSPALPPHVPRAPTQPHPPCT
PLCRARATGSLAPSLTVCRDKQAWHCAGKYLKEISPGNP
back to top

mRNA from alignment at S-ischiensis_contig104:307085..310793-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig104.1815.1 ID=mRNA_S-ischiensis_contig104.1815.1|Name=mRNA_S-ischiensis_contig104.1815.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3709bp|location=Sequence derived from alignment at S-ischiensis_contig104:307085..310793- (Schizocladia ischiensis KU_0333)
TGAACGAACACGTGGCGCCGGCCTGGACCTCGCGCGGGGGCATGGTGGAA
CGAGAACATTGCATCCAAGGGCAATTGCTTGTTGTGGCACTGGCTCCCTT
CCTGACCAGTGTGTTCCCTCTGACGGCAGGCGCGCCTCCACCCTCGAGGC
ACCATGGGGCTCGCATTCTCCCGCCTCTGGGAGCGCATGTTTGGGAAGAA
GGAGATGCGCATCCTCATGGTGAGGCAGGAATATGTTCCGCTTGCAATTT
GGGGTTTCCTCACACAACGCACCCACGCACTTGAACGCAGTCCACGCTTT
GGGCGTCGTCACGTGCGTGGCTGCGTTTCATGCTCGTTCCGAGGGGTGCA
TCACAAACGCCCGTGCCTGTGCACCTGACGCCACGAGCGGCATTTGGCGC
ACGCTGTTCAGCCGCAGATACAAGCTGGAAATCCATCCCCTGCTCCTCAC
CGGTCTAGCGATACCCATGCAATGTCCCTTTGCCTTTCACGCAGTGCCCC
CGCCCCACCCTACCCGGCCTGTTCCGCCTCACTTTCGCTGGCCGCACACC
CCTTTTTGCCGCCGCGGCGAACCCGGAACACAAAATTAGGTGGGTCTTGA
TGCCGCGGGTAAGACGACCATTCTGTACAAGCTCAAGCTGGGCGAGGTGG
TGACCACCATCCCCACCATCGGCTTCAACGTGGAGACTGTAGAATACAAG
AACATTAGCTTCACAGGTGTGTGGTGATGGGATGGGCAAGACCCCAGATT
GTGAGCCGGTCCAGTCGGGCGGGAATTTGGCTTGTGAAACGAACATGCAT
GCGAATTATGCTGTGGCGGTTGGAGGGCGCCCCCTTCGTATGTTGTAGGG
TCTGAGGGCGCGTGAAGTTTCCGAGACGGGCTGGAGCCCTATGTAACGCA
TTTTTTTTTGTGGGGAGAGGTCGGAACATGAGATGGGCGACGAGCGGGCA
GCTGTTGGGAGCCTGTGTGCCTGTGTGTGTGTGTGCTTGTGTTACTTGTA
GACCGTTTTGCATAGTGCACCTTCCCGACCAAAACTTGCCTTTGGCGCGC
TGTAAAAAATGGACGTGAACTTTCGGGCGGCACAATTTATAGCATTCGCC
GATATTTTTTTTGCATCGGCCTGCGTTCCTATTGGGAGGTCGGCATGCAC
GAAGCATCACAGAAGAGTTATTTGTTGTGCCAGGCATCAGTGCACGGTGC
GGTCTGCAACACTTCATCCCGACAACGCCACGGCAGCAAGGCGGGTTTGG
TGCATGTCCTTTTTCCCCGCCGTGCAGGTCGTCAATTTCCATTGTTTTCT
CCTCTAGGGAGACCCGTCCCATACATGATTCAGCTCCTTGGCACTCCCAA
GCAACAAAGTTTGACTGCCCGGCCACACCACAGCTGCGGGCGGGGACATT
GGTGCATCGGCGGCCCGCCCAAACTGATTGGCAAACAATAAGTTCACAAC
GGCGAAAAAAAGTCCCGATAAAGTGCGCCACACCAAAACTGCCCGCACAA
AATTGCCCTTCCGCAGTTTTGTTCAGGCAAAAAAGTTAGTATAAAAGACG
ACCTTAGAAACAGAATTCACGGCTGGGGGAAATTCTGATTGCGTTCTGCC
CCGGGCATGTCGGCAGGCGGGGGGAGGGGGTAGGGGGTTGTGTGATGGGG
CGCCATGGGTGCTCTGGTGCCACGAGCTCCTTTTTTGTATTGCTCCGTAG
CTCCCTGCCACATCTATAACCCGCCTTCCAACGAAGACCCGGTGCAGACT
AGGTGCTGCTCCAGCAGTAGCAGCAGCAGCAGCAACAAATTGACCTGTTC
ACGAGGCTTATTACACTACAAGTCTCTGCAGCGGCACATAGCACATGGCT
GCCGCCTTTTCTGCCTGCCTGTCTGGGCACCCGGCGTGGCGGCCTTCTGT
CGTTCACCCTTTTTTTTTTTGCACCGGCAGTGAGTGCCCGGAGCCATAAA
CTCTTGTTATATAGTGCTGCTTGTACTGTACACCAGGGGCAGAGTTACTG
CGTACTTGGCACGGTTCCAGATTTAGCTCTCGGGGATGGTATGGCCTCCA
CTGTCACCTCTACATGTTCTGACACGTATTGTGTAGGGGAGTTGGCCTCC
TCCGGGAGAGAGGGGTGGGGACGGGGCGGAACCAATAAGCGCACAGGCGG
CATGTCGTCCGCGCAGGTGGGTCGTGTCCCTCGGTTCAATATGGCAGAGT
TGTGTGTGTATGGATAGCGTAAACGAACGTGAGCCAGGGAGTTGTCGTTG
CGCCTTCAGTTTTTTTCCCATCAAGTTTGCAAAGAGTTGAATGGACATGA
TATCCTTGGAAGTACAGTACAGCAGACGCCTAGAGTTTGTGTTGGTACAG
TACATCCCACACTGAGTAGTTTAGTGTGCCATAGGGGATTAGCAGCGGAG
TAGGCGAATTAGTAATTTCCTGTGAGTGGAACCAGCGGTAATTTTTTTCT
TTCCGAGGCCAATCGCTAGAGCAAACAGTCTCTCAGCTTTCAGGAGTGGG
CCGTCCTTTTTTTTCCTTTCCAAGGGTTCTCACTGGAGCTTAAATTACAA
AGGAAGTCCCATGGTCGGGAATGGCCCGGCTTCTTACATGCCCGCTACCT
TTGTTCACCGCGGTAGTGAACACTTTTTTCTTTTCTTTTTTCTCCGGTAT
GCCAACAAACAAGAGGATGCCCGACAATGGATTTGCTTTGTTGGTTGTGC
AGCCAGCGTGCGAGCACAAAGGGTCGGCTGATCAATAAGCTAGACGGATA
GCCCGCGCGCTCAACACCACCCACCCACCCGACCGTGTTTGCCCAGGGCA
CAAGGCACGCGCGCGACTGGGGCAGGTTGTGCGCCACTGTCCTACTGTAG
CATGCGTCAGTCGTACTCGAGTACATGTGGGAACAAGAGGCGATTCCACA
CGCTTGCGGCAGGGTTTGGGGCCGTGCATGCCACTGCCGAGCTTTCTCAA
ATCGGCCTGCGCAATCGCAGGGGCGGAGGGCCTACGTACAAATTGTTGTA
TCCCAATAAGAATGCACACCGTGCCATGTTTTCCTCGCCCACGTCTGCGT
GTTTGTGGAATGGCCTCTCCCCACTATCCCCCCCGCCGTCCCTGGCTCTA
TTGCGCTCATGCTTGTGCATCTCTGCCTGCTGCTCTCCCCGCCTTTGCCT
CTCTCCGTCCCTCATTCTCTCTCTCCCTCCCTGTTTTCCTCTCTTCCCCC
CCCTTGCCCCCCCTCTTTTTCCCCTCCTCTCTCTCCCCCGCCTCCCCCAT
CACCTCTCCCCTCCTGCCTCCCCCTAACCCCTTCCCCCGGTGGCACTCAC
GCACGGGCCATCGCGAACGCCTCCTCGTCCCCCAGTTTGGGACGTGGGAG
GCCAGGATAAGATCCGGCCGCTGTGGAGGCACTACTACCAGAACACGCAG
GGGCTCATCTTTGTGGTGGACTCCAATGACCGCGACCGGGTCGACGCCGC
CCGCGACGAACTGCACCGCATGCTCAACGAGGACGAACTGCGCGAGTCCA
TCCTCCTGGTCTTCGCCAACAAGCAGGTGCGCTCGCCCGCCCTGCCGCCC
CATGTGCCCCGTGCTCCCACGCAGCCCCACCCCCCGTGCACCCCCCTTTG
CCGCGCACGTGCCACGGGATCCCTGGCTCCCTCCCTGACTGTTTGTCGGG
ACAAGCAAGCATGGCACTGCGCTGGGAAGTACTTGAAGGAAATTTCACCC
GGCAACCCT
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig104:307085..310793-

>mRNA_S-ischiensis_contig104.1815.1 ID=mRNA_S-ischiensis_contig104.1815.1|Name=mRNA_S-ischiensis_contig104.1815.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1134bp|location=Sequence derived from alignment at S-ischiensis_contig104:307085..310793- (Schizocladia ischiensis KU_0333)
ATGGGGCTCGCATTCTCCCGCCTCTGGGAGCGCATGTTTGGGAAGAAGGA
GATGCGCATCCTCATGATGGGGCTCGCATTCTCCCGCCTCTGGGAGCGCA
TGTTTGGGAAGAAGGAGATGCGCATCCTCATGGTGGGTCTTGATGCCGCG
GGTAAGACGACCATTCTGTACAAGCTCAAGCTGGGCGAGGTGGTGACCAC
CATCCCCACCATCGGCTTCAACGTGGAGACTGTAGAATACAAGAACATTA
GCTTCACAGGTGGGTCTTGATGCCGCGGGTAAGACGACCATTCTGTACAA
GCTCAAGCTGGGCGAGGTGGTGACCACCATCCCCACCATCGGCTTCAACG
TGGAGACTGTAGAATACAAGAACATTAGCTTCACAGTTTGGGACGTGGGA
GGCCAGGATAAGATCCGGCCGCTGTGGAGGCACTACTACCAGAACACGCA
GGGGCTCATCTTTGTGGTGGACTCCAATGACCGCGACCGGGTCGACGCCG
CCCGCGACGAACTGCACCGCATGCTCAACGAGGACGAACTGCGCGAGTCC
ATCCTCCTGGTCTTCGCCAACAAGCAGGTGCGCTCGCCCGCCCTGCCGCC
CCATGTGCCCCGTGCTCCCACGCAGCCCCACCCCCCGTGCACCCCCCTTT
GCCGCGCACGTGCCACGGGATCCCTGGCTCCCTCCCTGACTGTTTGTCGG
GACAAGCAAGCATGGCACTGCGCTGGGAAGTACTTGAAGGAAATTTCACC
CGGCAACCCTTTTGGGACGTGGGAGGCCAGGATAAGATCCGGCCGCTGTG
GAGGCACTACTACCAGAACACGCAGGGGCTCATCTTTGTGGTGGACTCCA
ATGACCGCGACCGGGTCGACGCCGCCCGCGACGAACTGCACCGCATGCTC
AACGAGGACGAACTGCGCGAGTCCATCCTCCTGGTCTTCGCCAACAAGCA
GGTGCGCTCGCCCGCCCTGCCGCCCCATGTGCCCCGTGCTCCCACGCAGC
CCCACCCCCCGTGCACCCCCCTTTGCCGCGCACGTGCCACGGGATCCCTG
GCTCCCTCCCTGACTGTTTGTCGGGACAAGCAAGCATGGCACTGCGCTGG
GAAGTACTTGAAGGAAATTTCACCCGGCAACCCT
back to top