mRNA_S-ischiensis_contig104.1800.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig104.1800.1
Unique NamemRNA_S-ischiensis_contig104.1800.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig104.1800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig104contigS-ischiensis_contig104:127886..128913 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size230
Cds size228
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815559.6992557-CDS-S-ischiensis_contig104:127885..1279961622815559.6992557-CDS-S-ischiensis_contig104:127885..127996Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 127886..127996 -
1695739769.9286652-CDS-S-ischiensis_contig104:127885..1279961695739769.9286652-CDS-S-ischiensis_contig104:127885..127996Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 127886..127996 -
1622815559.7122638-CDS-S-ischiensis_contig104:128796..1289131622815559.7122638-CDS-S-ischiensis_contig104:128796..128913Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 128797..128913 -
1695739769.936967-CDS-S-ischiensis_contig104:128796..1289131695739769.936967-CDS-S-ischiensis_contig104:128796..128913Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 128797..128913 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig104.1800.1prot_S-ischiensis_contig104.1800.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig104 127886..128913 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig104.1800.1

>prot_S-ischiensis_contig104.1800.1 ID=prot_S-ischiensis_contig104.1800.1|Name=mRNA_S-ischiensis_contig104.1800.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=76bp
MRSGEVWQHLWEGLVDHNAVPADCPSDRVLHAGTFHYLQIANFNYLMCWL
AGGWMLSGRDISNCFLPSVGRRKNKV
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mRNA from alignment at S-ischiensis_contig104:127886..128913-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig104.1800.1 ID=mRNA_S-ischiensis_contig104.1800.1|Name=mRNA_S-ischiensis_contig104.1800.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1028bp|location=Sequence derived from alignment at S-ischiensis_contig104:127886..128913- (Schizocladia ischiensis KU_0333)
ATGCGCAGCGGGGAGGTGTGGCAACACCTGTGGGAAGGACTGGTGGATCA
CAATGCGGTGCCCGCAGACTGCCCCAGTGACCGGGTGCTGCATGCGGGGA
CCTTCCACTATCTGCAGGTGTGTTCACTCCCAAGTCACATGTACGGTACA
TAGAGAGCTCACGAACATTGATGATTGTGATTGTTTCGAGTAAGAGAGAT
GACCTGGGATCCCCCCCCGCCGTGCCACGGCATGGTGGGGACCCCCCTGA
TGGGCCTAGGCCCAGCAGGTGGGGCCGGGGGGGGGGGGAACGCCATGACT
CCCGCGAGTCAGGGACGGGGGAAGCGGGGAACTGGCCACCCCTCCACCAA
GGGCGGAGGGATGCCCCCCCCCCCGCCTGAGCTGGCTCTGCCGGCAGGCC
CTGTCTGGGTCGAGGCACGTGGTCAATGGTCTCGGGACTGTATGGCAGGC
ACAGCGCGGGGTACTTTCAAGTATGTAATTCGAAGATAGCTGCAAGTCAC
GTCAGTGCCGCAGTCGCTGCCGCTGTGGATAGTCGCCGCCAGTCACCCGC
CCATTCTCCCTCCCTTGCTCATACAAGTAGTTTGAAATGCTGTACATCAT
TGTCCCTCAGGGGCGCCAGTGCACTCACCCTGCACACTCACCATGTTTGG
TGTGTCGTTGCCTTCAACTGTACAGTACAGTAGCTCTACTGTCACCAACT
GGAAGAGAACAATGACCTGTCTACCTCATGTGCTGGCTGTCACTAGCCCT
ATGATGTACTCGAGTATGGCAATACCGCAGTACTGCAGCACTACAGTAGA
AGACCACGGTACACTCCTTCCTCACTAGGGTCCCATGCGAGCACCACGCT
GAAAGTCGTTCATGTACTCATATTGCATAGAGTAGCGTAATGCTCTAAAC
ACACAAAACAATTACAGATTGCCAACTTCAACTACCTCATGTGCTGGCTG
GCGGGGGGCTGGATGCTGAGCGGACGGGACATCAGCAACTGCTTCCTACC
CTCCGTCGGTCGGCGTAAGAACAAAGTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig104:127886..128913-

>mRNA_S-ischiensis_contig104.1800.1 ID=mRNA_S-ischiensis_contig104.1800.1|Name=mRNA_S-ischiensis_contig104.1800.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=456bp|location=Sequence derived from alignment at S-ischiensis_contig104:127886..128913- (Schizocladia ischiensis KU_0333)
ATGCGCAGCGGGGAGGTGTGGCAACACCTGTGGGAAGGACTGGTGGATCA
CAATGCGGTGCCCGCAGACTGCCCCAGTGACCGGGTGCTGCATGCGGGGA
CCTTCCACTATCTGCAGATGCGCAGCGGGGAGGTGTGGCAACACCTGTGG
GAAGGACTGGTGGATCACAATGCGGTGCCCGCAGACTGCCCCAGTGACCG
GGTGCTGCATGCGGGGACCTTCCACTATCTGCAGATTGCCAACTTCAACT
ACCTCATGTGCTGGCTGGCGGGGGGCTGGATGCTGAGCGGACGGGACATC
AGCAACTGCTTCCTACCCTCCGTCGGTCGGCGTAAGAACAAAGTGATTGC
CAACTTCAACTACCTCATGTGCTGGCTGGCGGGGGGCTGGATGCTGAGCG
GACGGGACATCAGCAACTGCTTCCTACCCTCCGTCGGTCGGCGTAAGAAC
AAAGTG
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