mRNA_S-ischiensis_contig104.1793.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig104.1793.1
Unique NamemRNA_S-ischiensis_contig104.1793.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig104.1793.1 vs. uniprot
Match: D8LCI9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCI9_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 5.640e-22
Identity = 53/133 (39.85%), Postives = 81/133 (60.90%), Query Frame = 1 
Query:  148 KTLMERATPFFKTGVLREPEWWKAVAQVPPYVPRPYGYKLKEMRHPTDRLVRKHQDRNPQVLREPLWLG----HDGPPTLSHMFAKRQYALMQKGVPEEDAYAQAEAALSSDRQRDLEAVRRMVEEAAQAVGG 534
            KT +++ +   K G++  P+W+ A  QVPP+  RP    ++ ++ P D L  +   RNP ++ +P WLG      G P +SH+FAKRQYALMQ G+ +EDAY +  A +  +R  D+ AV++MV EA+   GG
Sbjct:    6 KTALQKVSVLVKAGMMEPPKWYAAAKQVPPFQRRPSNG-IEALKLPWDTLANEFASRNPHMVEDPEWLGPRGFRPGAPPISHVFAKRQYALMQNGLMKEDAYERTHALMKMERSADVAAVQKMVREASSMAGG 137
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig104.1793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCI9_ECTSI5.640e-2239.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig104contigS-ischiensis_contig104:12221..16726 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_002740.1
Exons5
Model size556
Cds size555
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig104.1793.1prot_S-ischiensis_contig104.1793.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig104 12221..16726 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815560.4997516-CDS-S-ischiensis_contig104:12220..123201622815560.4997516-CDS-S-ischiensis_contig104:12220..12320Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 12221..12320 +
1695739770.35034-CDS-S-ischiensis_contig104:12220..123201695739770.35034-CDS-S-ischiensis_contig104:12220..12320Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 12221..12320 +
1622815560.5096376-CDS-S-ischiensis_contig104:12491..126191622815560.5096376-CDS-S-ischiensis_contig104:12491..12619Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 12492..12619 +
1695739770.3619797-CDS-S-ischiensis_contig104:12491..126191695739770.3619797-CDS-S-ischiensis_contig104:12491..12619Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 12492..12619 +
1622815560.5187767-CDS-S-ischiensis_contig104:13474..135731622815560.5187767-CDS-S-ischiensis_contig104:13474..13573Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 13475..13573 +
1695739770.3703363-CDS-S-ischiensis_contig104:13474..135731695739770.3703363-CDS-S-ischiensis_contig104:13474..13573Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 13475..13573 +
1622815560.5279078-CDS-S-ischiensis_contig104:14709..148001622815560.5279078-CDS-S-ischiensis_contig104:14709..14800Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 14710..14800 +
1695739770.3797383-CDS-S-ischiensis_contig104:14709..148001695739770.3797383-CDS-S-ischiensis_contig104:14709..14800Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 14710..14800 +
1622815560.5391946-CDS-S-ischiensis_contig104:16589..167261622815560.5391946-CDS-S-ischiensis_contig104:16589..16726Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 16590..16726 +
1695739770.3888483-CDS-S-ischiensis_contig104:16589..167261695739770.3888483-CDS-S-ischiensis_contig104:16589..16726Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 16590..16726 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig104.1793.1

>prot_S-ischiensis_contig104.1793.1 ID=prot_S-ischiensis_contig104.1793.1|Name=mRNA_S-ischiensis_contig104.1793.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=185bp
GCRGHRGRLSCNARGYTRPVKEEAVVVRPCLASDSLCACQNVMKRARLSK
TLMERATPFFKTGVLREPEWWKAVAQVPPYVPRPYGYKLKEMRHPTDRLV
RKHQDRNPQVLREPLWLGHDGPPTLSHMFAKRQYALMQKGVPEEDAYAQA
EAALSSDRQRDLEAVRRMVEEAAQAVGGGEGGAVE
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mRNA from alignment at S-ischiensis_contig104:12221..16726+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig104.1793.1 ID=mRNA_S-ischiensis_contig104.1793.1|Name=mRNA_S-ischiensis_contig104.1793.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4506bp|location=Sequence derived from alignment at S-ischiensis_contig104:12221..16726+ (Schizocladia ischiensis KU_0333)
GGGTGCAGAGGGCACCGTGGCCGCCTTTCCTGCAACGCGCGTGGTTACAC
AAGGCCCGTGAAGGAAGAAGCTGTAGTTGTGCGGCCGTGCTTGGCATCAG
GCGAGTGCATGCCCATCCTAGACTATTGACACGTCGAGCGAATGGAGGGG
ACGAAATTGTGCAGGAGCACCGCGCGTAGCACTGCCCTTGCTGGCTTCCC
CTGACGTGCCCGCGCCATGGAAAAGTTGACCAGGCAATTCGCTCTCTGCA
CACTCTGCCTGCGCTCTGCAGACTCGCTGTGCGCGTGCCAAAACGTCATG
AAGCGTGCACGCCTGTCCAAGACCTTGATGGAGCGGGCCACCCCCTTCTT
CAAGACCGGGGTGTTGAGGGAGCCCGAGTGGTGGAAAGCCGTTGCTCAGG
TGCGCGGTAAAGCCTAATGCAGCGCATCAACCGACCCGTGGTCCGACGAC
CGAACCTAACCTGAAGTACAGCTTGAGTGGGTGACGTGCCATCTATATCT
TCCCTGCCTGAACCCTCTGCCCTGTGAGAACCGCGGTCAAATTTTTCTCA
CTACTGGACAGCACTGTGCAAACAACGGGACAGCCCTTTGATCAATGAAG
TATTGTGTGTGAGTGCATGCTGTACTTGCTTGTAGTGCCGGCTGCGAAGG
ATAAGTGATCAGAGTTTCTCTTAAACCTCGGAGGACGGCCGTACAGACCC
GTCTTCTCTTGTTGCGTGTAGGTACTCGCTCAGCGTAATTATTGTGCTCT
GGCCCTTGCTCTGCTGCCGTGCAGATGCTTCCAAACACAAGTACCTACAT
GGATGGCCTACTTTCACATGCTATTATGGCCGCAAGTTCAGTTTGAAACG
TCAACGCACGTAATGGTGCTGTACAAGTACAAGTAGGCCCAGCCACACCC
CGGCGTCTCCACCACGTACCCCCCCCTAACTTCCCACAATGCTGACCCTA
ACCCTAACACTGCCCTGGACCCGTACAGACCAGTCTTCTCTTGTTGCGTG
TAGGTACTCTCTCAGCGGAATTATTGTGCTCTGGCCCTTGCTCTGCTGCC
GTGCAGATGCTTCCAAACACAAGTACCTACATGGATGGCCTACTTTCACA
TGCTATTATGGCCGCAAGTTCAGTTTGAAACGTCAACGCACGTAATGGTG
CTGTACAAGTACAAGTAGGCCCAGCCACACCCCGGCGTCTCCACCACGTA
CCCCCCCCTAACTTCCCCCAATGCTAACCCTAACCCTAACACTGCCCTGG
ACAGGTCCCCCCGTATGTGCCCCGGCCTTACGGGTACAAGCTCAAGGAGA
TGAGGCACCCCACCGACCGACTCGTCCGGAAGCACCAGGATCGCAACCCA
CAGGTACTGTGCTTTCCGCAAGTAACACCGTGCTGTACTGTACTAGTGGA
GTTTTACGGTAGTCCTGCACCCCCAAAACGTTCTTTGGGAGAATACATAT
TGTACCGCCGGCTACAGTAGGATATAATGTCTCCGTGCTCTGCTGTAGGT
ACCGCAAAAGTCGAGAATTGCTGTACTCGCGTACAAGTAAGTGATGTACT
GTACTGTACTGTACATCCAAGCACAAGTTATAGTATGGCTTCAACTTCTT
GTACAGTGCCACTACAGTACTCGCACTTGGGAAGGAAGTTAGTAGACACA
TACCCTACTCGCGGCAATTCCGGATTCCCGACTGGGGAAGGCACCGCGCC
GATGCGCATCGCCGCCCGCCACGCCCCGTCTCTCGTGCCGTGGATTGCCG
ATGCGCATACCCCAACTTTCTTTTGCTTTCGCTAAACCGAGCTTCTTGTT
GCGATTGTGTTCCGATGCGCTCGCTGTCTCTGCGGCCGTCATCTCTGCGA
TTCGGGGCGATTGCATCTGCCTCAGCGGTCGCGGCGCTCACTCCTGCCGA
GTTGGATGCGGGTTCGAGTGCCTTTTTTTCTCGCCTTCCAACCACTTCCC
AATAATCGCAGTGTCAAACATTGCCCACTGCAGTTGCCAGGGACTGCGCA
CGCGCGTCTCATCATGGAGGTCTCTTCGCAAGACAGGCCCCCAACAGCAA
GTACAATGCTACCCGGCCTGCCTCTGTGTTTGGCATTAGCCAGCCCGGCA
CGGCCCGTGCCATGCCATGCCCCCCTACTATGGCTATGCAGCTTGTCAAG
TCCTAGGCTACAGTAGCAGTTACTAGTATGGCTATGCTAAGCTACACTTC
ACATGACGTGAGCCCCATGTGGCCGGTGGCCCCCATGCTTGTGTCGTTAG
GGCTGTCCTTGTCCAGCGTGTACTCACCTTGGACAGGGGACACCCCGTCC
GGCGCATGGCTGTAAGTAATAGTACTAGTACCAGTACTTACAGGAATACT
CGAGTAGTGCAGTATTACGAAGTACACTAGTTGTAGTGCAAGCTATTGTA
CTGCAAGTAAGTATTATTGGTACCAACTCGTACCAGCAAGTGCTGTCCTG
TCCTGAACTTGCGATATTACATGTTGTATTGTCCAACAGGTGCTGCGCGA
GCCGCTGTGGCTTGGGCATGATGGGCCGCCCACGCTCAGCCACATGTTTG
CCAAGCGCCAGTACGCTCTCATGCAGAAAGGTGTGTCACCATTCCGGCTG
CTCATGTTGGCGCCGCTTGATTCCTGTTGCCATGTAGTAGTGTACTCGTA
CAGTGGTAGTTTTCCTCGTACTCGTAGTACATTAGTGCGAGGGTTAACTA
TGCGCCCCGTGCTGTATGTGGTGCCCCTGCTGCTGTAGGTTTGTTTTACT
TCCAAGTACTGTAATGTTGGAAGAAGGGGCCCATTGTGTGGTGATGGTGA
TGGGCACATAGGCGTGTTTGTTTCACATTCCATGGCTGCTAGAGTATGAG
TAGTACTCAGTGGTGTCCTGTCAAACTATACGAGTACAGTACCTACATAG
TACGTCAGAGGACATTGCTACTTACTACTGTACAGTGCTGTAAGACTACG
AGTATTGTACGAGTACAGTAGTACAGCACAGTACACGCCATGTGTGTGTG
AAGAGGTGGACACCACGCCCTTGCAAGTGTACGAGTAGTGTATAGCAGAG
GTGCACACGACAGTTGCGGCAAACATATCACGTTTGTTCAGGGGTACGAA
TGATTCTCGTCGCGTGTGCAGGGTTCGAGCTGGCCCGAAACGGCCGGCAA
CGATAGCAATAGAGGCCACCATTCCTGCAGGCAATAGACACATCAGCCCC
GAGGGAATCAATCAATCCCAACTGTCGGTCCGACCAGTGATAGTGGTATT
CTGGGAAAGATGTTGAACAGTTACTTGGGAAGTATTGTGTGCCTTGTTGC
GAGCGGAGCGAGGGAGCTTAGCGAGCGAGCGAACCGGGGCTACTTGCTTC
ATGTTTGTAGCGAGCGAGCGAACCGGGGGCTACTTGCTTTGTGTTTTCTA
GGGCCGCGGCCAGGCCGCCGAGCCGAGCGAGGGAGCGTAGCGAGCGAGCG
AACCCGGGGCTACTTGCTTCGTGTTTGTAGCGAGCGAGCGCACCGGGGGC
TACTTGCTTTGTGTTTTCTAGGGCCGCGGCCCGGCCACCGAGCCGAGCTC
GAGCTCGAGGAGCCCCGGGCCTGAGACCCACTGCACGCAGGGGAGGGCCC
GTGCCGAGGTGAGGCCGAGGCGATGGGTTGCACCCTGATCCCGGGCTCGC
CATTGGGCCCCCGGGACAAGGGCGTTTCTACCATTGCCCATTTGATTGGC
TGTCATGTTTACTAGAAAGCGCAACCCGTATATCTTTCGTGCGCCTATGT
TTGTGAAAGGCCCATTGTTGCGGAAAATCGTGCCTCCCTGGGGGACCCAA
CACCGGTCGACTAAACGAGCACATTACTGTACCCGTACACTGTAACTTGC
CATGTGCTCGCTCACAATATTTTGAAACCTCTCTTTAGTACGCCTAGGCA
AACGCCGCCTGCTCGGAGGGCTGAGGCAGCTACAGCTGCAACTACGACTG
TACTGAGGGGCCCGGAGGGCGTGCGCCGCACGGTCGAACTAACATATTTA
CTGACGAACTTGGGTCAAATCATATCCAGCCGACGACTATCTACGCAGCG
GTTGTTACTCGTGGACAGTGTCGACCCACACTAACTGTCTACTGCAGTCC
AAGCATGTACTTTCAAGACTGCCCACGTCGTGAAACGCGAGACCGTTTTG
AGTACCACGCGCTCGACCGAGAAGGAGCTGCCTCCCCTCCCAACGGTGGG
TCACGGTACAAGTAGCCATATCATGTACACATACTAGTGTGTGTGTTTGG
AATGTGACAACACCAATGAAGTACTTGGTAATTTGTACTGTACTAGTACT
CGCACAGCACTGTACTTGGACATGACATGGAATAGGTGACAGCACCAATG
AACATAACACGCCGGGCAGGCGTGCCGGAGGAGGATGCGTATGCGCAGGC
GGAAGCGGCCCTCTCATCAGATCGACAACGGGACCTGGAGGCCGTGCGCC
GGATGGTAGAGGAGGCCGCCCAGGCCGTGGGCGGGGGCGAGGGCGGGGCC
GTGGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig104:12221..16726+

>mRNA_S-ischiensis_contig104.1793.1 ID=mRNA_S-ischiensis_contig104.1793.1|Name=mRNA_S-ischiensis_contig104.1793.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1110bp|location=Sequence derived from alignment at S-ischiensis_contig104:12221..16726+ (Schizocladia ischiensis KU_0333)
GGGTGCAGAGGGCACCGTGGCCGCCTTTCCTGCAACGCGCGTGGTTACAC
AAGGCCCGTGAAGGAAGAAGCTGTAGTTGTGCGGCCGTGCTTGGCATCAG
GGGTGCAGAGGGCACCGTGGCCGCCTTTCCTGCAACGCGCGTGGTTACAC
AAGGCCCGTGAAGGAAGAAGCTGTAGTTGTGCGGCCGTGCTTGGCATCAG
ACTCGCTGTGCGCGTGCCAAAACGTCATGAAGCGTGCACGCCTGTCCAAG
ACCTTGATGGAGCGGGCCACCCCCTTCTTCAAGACCGGGGTGTTGAGGGA
GCCCGAGTGGTGGAAAGCCGTTGCTCAGACTCGCTGTGCGCGTGCCAAAA
CGTCATGAAGCGTGCACGCCTGTCCAAGACCTTGATGGAGCGGGCCACCC
CCTTCTTCAAGACCGGGGTGTTGAGGGAGCCCGAGTGGTGGAAAGCCGTT
GCTCAGGTCCCCCCGTATGTGCCCCGGCCTTACGGGTACAAGCTCAAGGA
GATGAGGCACCCCACCGACCGACTCGTCCGGAAGCACCAGGATCGCAACC
CACAGGTCCCCCCGTATGTGCCCCGGCCTTACGGGTACAAGCTCAAGGAG
ATGAGGCACCCCACCGACCGACTCGTCCGGAAGCACCAGGATCGCAACCC
ACAGGTGCTGCGCGAGCCGCTGTGGCTTGGGCATGATGGGCCGCCCACGC
TCAGCCACATGTTTGCCAAGCGCCAGTACGCTCTCATGCAGAAAGGTGCT
GCGCGAGCCGCTGTGGCTTGGGCATGATGGGCCGCCCACGCTCAGCCACA
TGTTTGCCAAGCGCCAGTACGCTCTCATGCAGAAAGGCGTGCCGGAGGAG
GATGCGTATGCGCAGGCGGAAGCGGCCCTCTCATCAGATCGACAACGGGA
CCTGGAGGCCGTGCGCCGGATGGTAGAGGAGGCCGCCCAGGCCGTGGGCG
GGGGCGAGGGCGGGGCCGTGGAGGCGTGCCGGAGGAGGATGCGTATGCGC
AGGCGGAAGCGGCCCTCTCATCAGATCGACAACGGGACCTGGAGGCCGTG
CGCCGGATGGTAGAGGAGGCCGCCCAGGCCGTGGGCGGGGGCGAGGGCGG
GGCCGTGGAG
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