mRNA_S-ischiensis_contig103.1788.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig103.1788.1
Unique NamemRNA_S-ischiensis_contig103.1788.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig103.1788.1 vs. uniprot
Match: UPI001BFC594E (HNH endonuclease n=3 Tax=Escherichia coli TaxID=562 RepID=UPI001BFC594E)

HSP 1 Score: 77.8 bits (190), Expect = 1.160e-15
Identity = 46/111 (41.44%), Postives = 63/111 (56.76%), Query Frame = 1
Query:    7 RLVYRTWVGHFPTNE---SAVNGKMAERFVLDHKDDNKANNHADNLDFVSHTANSRKRAGRNTNNSSGVNGVAWHNRGGKWMAYIPVKGKRRNLGYFDDKRDAEKARLDAQ 330
            R++ +   G +P +       NG + E + +DH D N  N+  +NL  VSH  N R ++ ++ NN+SG  G+ W     KW AYI V G  RNLGYFDD RDA KAR  A+
Sbjct:   42 RVIIKLKGGMYPASRIIWEMHNGPIPEGYEIDHIDHNTRNDSINNLRLVSHVENLRNKS-KHKNNTSGYTGIIWVKGCKKWRAYITVNGDWRNLGYFDDIRDAVKAREKAE 151          
BLAST of mRNA_S-ischiensis_contig103.1788.1 vs. uniprot
Match: A0A0F8YQU9_9ZZZZ (HNHc domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F8YQU9_9ZZZZ)

HSP 1 Score: 72.4 bits (176), Expect = 1.320e-13
Identity = 48/110 (43.64%), Postives = 57/110 (51.82%), Query Frame = 1
Query:    4 HRLVYRTWVGHFPTNESAVNGKMAERFVLDHKDDNKANNHADNLDFVSHTANSRKRAGRNTNNSSGVNGVAWHNRGGKWMAYIPVKGKRRNLGYFDDKRDAEKARLDAQK 333
            HRLV+    G+FP NE            +DH D NK NNH +NL  VS T NSR   G   +N SGV GV  +    KW A+I V GK   LGYF    DA  AR + +K
Sbjct:   60 HRLVWLYHYGYFPENE------------IDHIDQNKLNNHINNLREVSSTCNSRN-CGNRKDNISGVKGVVPYKSRSKWRAHITVSGKMITLGYFVKFVDAVMARYEKEK 156          
BLAST of mRNA_S-ischiensis_contig103.1788.1 vs. uniprot
Match: A5H1L2_9CAUD (p42.1 n=1 Tax=Xanthomonas virus Xop411 TaxID=470314 RepID=A5H1L2_9CAUD)

HSP 1 Score: 71.2 bits (173), Expect = 4.380e-13
Identity = 43/113 (38.05%), Postives = 62/113 (54.87%), Query Frame = 1
Query:    1 VHRLVYRTWVGHFPTNESAVNGKMAERFVLDHKDDNKANNHADNLDFVSHTANSRKRAGRNTNNSSGVNGVAWHNRGGKWMAYIPVKGKRRNLGYFDDKRDAEKARLDAQKTY 339
            VHRL +    G +P  +            LDH +  + +N  +NL   S+  NS+ R G+ +NN+SGV GV+W+ R GKW A I + GK  +LGYFD   +A  AR  A++ Y
Sbjct:   59 VHRLAWLLHTGSWPIQQ------------LDHINRVRDDNRIENLRECSNAENSQNR-GKQSNNTSGVTGVSWYKRSGKWQALIKLNGKHIHLGYFDTIEEAATARSAAKRKY 158          
BLAST of mRNA_S-ischiensis_contig103.1788.1 vs. uniprot
Match: UPI000D359814 (HNH endonuclease n=2 Tax=Enterobacteriaceae TaxID=543 RepID=UPI000D359814)

HSP 1 Score: 66.6 bits (161), Expect = 2.290e-11
Identity = 43/109 (39.45%), Postives = 58/109 (53.21%), Query Frame = 1
Query:    1 VHRLVYRTWVGHFPTNESAVNGKMAERFVLDHKDDNKANNHADNLDFVSHTANSRKRAGRNTNNSSGVNGVAWHNRGGKWMAYIPVKGKRRNLGYFDDKRDAEKARLDA 327
            VHR++   W  H        NG +     +DH D N  NN   NL  V+H  N R +  R+TN  SG  GV+W+ +  KW A I + GK + LG+FDD +DA +AR  A
Sbjct:   52 VHRII---WEMH--------NGAIDSGMYVDHIDGNTFNNRLSNLRLVTHQDNHRNQKTRSTN-KSGYLGVSWNKQHQKWQASIKLSGKVKYLGWFDDIKDAARARKAA 148          
BLAST of mRNA_S-ischiensis_contig103.1788.1 vs. uniprot
Match: UPI0007351C76 (HNH endonuclease n=7 Tax=Enterobacterales TaxID=91347 RepID=UPI0007351C76)

HSP 1 Score: 63.9 bits (154), Expect = 2.680e-10
Identity = 40/115 (34.78%), Postives = 62/115 (53.91%), Query Frame = 1
Query:    4 HRLVYRTWVGHFPTNESAVNGKMAERFVLDHKDDNKANNHADNLDFVSHTANSRKRAGRNTNNSSGVNGVAWHNRGGKWMAYIPVKGKRRNLGYFDDKRDAEKARLDAQKTYWGD 348
            HR+ +    G +P +             +DH + N  +N   NL  V+   N+  R+   +NN+SGV GV++  R GKW A+I V GK ++LGYF  K DA  AR   ++T++G+
Sbjct:   59 HRIAFLLMTGSWPKS------------YIDHINRNPRDNRFCNLREVTPLQNTMNRSVA-SNNTSGVAGVSYEERRGKWRAHIKVNGKMKSLGYFKQKEDAIAARKKGEETHFGE 160          
BLAST of mRNA_S-ischiensis_contig103.1788.1 vs. uniprot
Match: A0A5U1N0Y7_SALER (HNH endonuclease n=13 Tax=Enterobacteriaceae TaxID=543 RepID=A0A5U1N0Y7_SALER)

HSP 1 Score: 63.9 bits (154), Expect = 3.750e-10
Identity = 39/109 (35.78%), Postives = 60/109 (55.05%), Query Frame = 1
Query:    4 HRLVYRTWVGHFPTNESAVNGKMAERFVLDHKDDNKANNHADNLDFVSHTANSRKRAGRNTNNSSGVNGVAWHNRGGKWMAYIPVKGKRRNLGYFDDKRDAEKARLDAQ 330
            HR+ +  + G++P  E            +DH   ++++N   NL  V+  AN++     +TN  +GV GV W+   GKW A I V GK +++GYFDD R+A KAR  A+
Sbjct:   71 HRVAWALYYGYWPEQE------------IDHISGDRSDNRIHNLRSVTSAANNKNLRLYSTN-KTGVPGVGWYKARGKWRAKINVSGKVKHIGYFDDFREAVKARKAAE 166          
BLAST of mRNA_S-ischiensis_contig103.1788.1 vs. uniprot
Match: A0A6L5PHZ1_9CAUL (HNH endonuclease n=1 Tax=Brevundimonas sp. SPF441 TaxID=2663795 RepID=A0A6L5PHZ1_9CAUL)

HSP 1 Score: 63.9 bits (154), Expect = 4.070e-10
Identity = 37/112 (33.04%), Postives = 61/112 (54.46%), Query Frame = 1
Query:    4 HRLVYRTWVGHFPTNESAVNGKMAERFVLDHKDDNKANNHADNLDFVSHTANSRKRAGRNTNNSSGVNGVAWHNRGGKWMAYIPVKGKRRNLGYFDDKRDAEKARLDAQKTY 339
            HR+++    G FP ++            +DH +  +A+N  +NL  V++  N R ++    +NSSG NGV+W     +WMAYI + G+ +NLG F    +A +AR +A K +
Sbjct:   78 HRVIWLMQTGRFPEDQ------------IDHINGVRADNRLENLRAVTNAENQRNKS-LQRDNSSGSNGVSWSKTRNRWMAYININGRMKNLGRFKTIEEAIQARSEASKLH 176          
BLAST of mRNA_S-ischiensis_contig103.1788.1 vs. uniprot
Match: A0A2H4PGL0_9CAUD (HNHc domain-containing protein n=1 Tax=Escherichia phage DTL TaxID=2048061 RepID=A0A2H4PGL0_9CAUD)

HSP 1 Score: 63.5 bits (153), Expect = 4.430e-10
Identity = 39/108 (36.11%), Postives = 61/108 (56.48%), Query Frame = 1
Query:    1 VHRLVYRTWVGHFPTNESAVNGKMAERFVLDHKDDNKANNHADNLDFVSHTANSRKRAGRNTNNSSGVNGVAWHNRGGKWMAYIPVKGKRRNLGYFDDKRDAEKARLD 324
            VH++VY    G           K+ +  V+DH D +K+NNH  NL   + + N+R  A R ++N +GV GV + +R GK+ AY   + KR +LG++D+  DA  AR +
Sbjct:   65 VHKIVYEIETGQ----------KVPDEMVVDHIDGDKSNNHISNLRLATWSENTRN-AKRRSDNKTGVTGVCYMSRTGKFAAYARYEKKRYHLGFYDNIDDAIAARAE 161          
BLAST of mRNA_S-ischiensis_contig103.1788.1 vs. uniprot
Match: UPI001FB136EB (HNH endonuclease n=1 Tax=Enterobacter hormaechei TaxID=158836 RepID=UPI001FB136EB)

HSP 1 Score: 61.2 bits (147), Expect = 7.250e-10
Identity = 36/87 (41.38%), Postives = 54/87 (62.07%), Query Frame = 1
Query:   88 LDHKDDNKANNHADNLDFVSHTANSRKRAGRNTNNSSGVNGVAWHNRGGKWMAYIPVKGKRRNLGYFDDKRDAEKARLDAQKTYWGD 348
            +DH + N  +N   NL  V+   N+  R+   +NN+SGV GV++  R GKW A+I V GK ++LGYF  K DA  AR   ++T++G+
Sbjct:   10 IDHINRNPRDNRFCNLREVTPLQNTMNRSVA-SNNTSGVAGVSYEERRGKWRAHIKVNGKMKSLGYFKRKEDAIAARKKGEETHFGE 95          
BLAST of mRNA_S-ischiensis_contig103.1788.1 vs. uniprot
Match: UPI001C712395 (HNH endonuclease n=5 Tax=Enterobacter TaxID=547 RepID=UPI001C712395)

HSP 1 Score: 63.9 bits (154), Expect = 7.820e-10
Identity = 40/115 (34.78%), Postives = 62/115 (53.91%), Query Frame = 1
Query:    4 HRLVYRTWVGHFPTNESAVNGKMAERFVLDHKDDNKANNHADNLDFVSHTANSRKRAGRNTNNSSGVNGVAWHNRGGKWMAYIPVKGKRRNLGYFDDKRDAEKARLDAQKTYWGD 348
            HR+ +    G +P +             +DH + N  +N   NL  V+   N+  R+   +NN+SGV GV++  R GKW A+I V GK ++LGYF  K DA  AR   ++T++G+
Sbjct:  131 HRIAFLLMTGSWPKS------------YIDHINRNPRDNRFCNLREVTPLQNTMNRSVA-SNNTSGVAGVSYEERRGKWRAHIKVNGKMKSLGYFKQKEDAIAARKKGEETHFGE 232          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig103.1788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001BFC594E1.160e-1541.44HNH endonuclease n=3 Tax=Escherichia coli TaxID=56... [more]
A0A0F8YQU9_9ZZZZ1.320e-1343.64HNHc domain-containing protein (Fragment) n=1 Tax=... [more]
A5H1L2_9CAUD4.380e-1338.05p42.1 n=1 Tax=Xanthomonas virus Xop411 TaxID=47031... [more]
UPI000D3598142.290e-1139.45HNH endonuclease n=2 Tax=Enterobacteriaceae TaxID=... [more]
UPI0007351C762.680e-1034.78HNH endonuclease n=7 Tax=Enterobacterales TaxID=91... [more]
A0A5U1N0Y7_SALER3.750e-1035.78HNH endonuclease n=13 Tax=Enterobacteriaceae TaxID... [more]
A0A6L5PHZ1_9CAUL4.070e-1033.04HNH endonuclease n=1 Tax=Brevundimonas sp. SPF441 ... [more]
A0A2H4PGL0_9CAUD4.430e-1036.11HNHc domain-containing protein n=1 Tax=Escherichia... [more]
UPI001FB136EB7.250e-1041.38HNH endonuclease n=1 Tax=Enterobacter hormaechei T... [more]
UPI001C7123957.820e-1034.78HNH endonuclease n=5 Tax=Enterobacter TaxID=547 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig103contigS-ischiensis_contig103:278052..278408 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeViruses
Seed ortholog score73.2
Seed ortholog evalue9.4e-11
Seed eggNOG ortholog424947.U5N0I9_9CAUD
EggNOG free text desc.HNH endonuclease
EggNOG OGs4QAIU@10239,4QPDE@28883,4QUQC@35237
COG Functional cat.S
Best tax levelCaudovirales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size357
Cds size357
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815559.2243547-CDS-S-ischiensis_contig103:278051..2784081622815559.2243547-CDS-S-ischiensis_contig103:278051..278408Schizocladia ischiensis KU_0333CDSS-ischiensis_contig103 278052..278408 +
1695739769.6623445-CDS-S-ischiensis_contig103:278051..2784081695739769.6623445-CDS-S-ischiensis_contig103:278051..278408Schizocladia ischiensis KU_0333CDSS-ischiensis_contig103 278052..278408 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig103.1788.1prot_S-ischiensis_contig103.1788.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig103 278052..278408 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig103.1788.1

>prot_S-ischiensis_contig103.1788.1 ID=prot_S-ischiensis_contig103.1788.1|Name=mRNA_S-ischiensis_contig103.1788.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=119bp
VHRLVYRTWVGHFPTNESAVNGKMAERFVLDHKDDNKANNHADNLDFVSH
TANSRKRAGRNTNNSSGVNGVAWHNRGGKWMAYIPVKGKRRNLGYFDDKR
DAEKARLDAQKTYWGDDC*
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mRNA from alignment at S-ischiensis_contig103:278052..278408+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig103.1788.1 ID=mRNA_S-ischiensis_contig103.1788.1|Name=mRNA_S-ischiensis_contig103.1788.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=357bp|location=Sequence derived from alignment at S-ischiensis_contig103:278052..278408+ (Schizocladia ischiensis KU_0333)
GTGCACAGGCTGGTGTATCGGACGTGGGTAGGCCACTTCCCCACCAACGA GTCGGCGGTGAATGGGAAAATGGCGGAGCGGTTTGTCCTGGACCACAAGG ACGACAACAAGGCCAACAACCATGCCGACAACTTGGATTTCGTGTCCCAC ACGGCCAACAGCCGCAAGCGTGCCGGCCGCAACACCAACAACTCCAGCGG CGTTAACGGCGTGGCCTGGCACAATCGGGGCGGGAAGTGGATGGCCTACA TCCCTGTCAAGGGCAAGCGGAGGAACCTGGGCTACTTCGACGACAAGAGG GACGCCGAGAAAGCCCGTCTCGATGCACAGAAGACGTACTGGGGTGACGA TTGCTAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig103:278052..278408+

>mRNA_S-ischiensis_contig103.1788.1 ID=mRNA_S-ischiensis_contig103.1788.1|Name=mRNA_S-ischiensis_contig103.1788.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=714bp|location=Sequence derived from alignment at S-ischiensis_contig103:278052..278408+ (Schizocladia ischiensis KU_0333)
GTGCACAGGCTGGTGTATCGGACGTGGGTAGGCCACTTCCCCACCAACGA
GTCGGCGGTGAATGGGAAAATGGCGGAGCGGTTTGTCCTGGACCACAAGG
ACGACAACAAGGCCAACAACCATGCCGACAACTTGGATTTCGTGTCCCAC
ACGGCCAACAGCCGCAAGCGTGCCGGCCGCAACACCAACAACTCCAGCGG
CGTTAACGGCGTGGCCTGGCACAATCGGGGCGGGAAGTGGATGGCCTACA
TCCCTGTCAAGGGCAAGCGGAGGAACCTGGGCTACTTCGACGACAAGAGG
GACGCCGAGAAAGCCCGTCTCGATGCACAGAAGACGTACTGGGGTGACGA
TTGCTAGGTGCACAGGCTGGTGTATCGGACGTGGGTAGGCCACTTCCCCA
CCAACGAGTCGGCGGTGAATGGGAAAATGGCGGAGCGGTTTGTCCTGGAC
CACAAGGACGACAACAAGGCCAACAACCATGCCGACAACTTGGATTTCGT
GTCCCACACGGCCAACAGCCGCAAGCGTGCCGGCCGCAACACCAACAACT
CCAGCGGCGTTAACGGCGTGGCCTGGCACAATCGGGGCGGGAAGTGGATG
GCCTACATCCCTGTCAAGGGCAAGCGGAGGAACCTGGGCTACTTCGACGA
CAAGAGGGACGCCGAGAAAGCCCGTCTCGATGCACAGAAGACGTACTGGG
GTGACGATTGCTAG
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