mRNA_S-ischiensis_contig103.1784.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig103.1784.1
Unique NamemRNA_S-ischiensis_contig103.1784.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig103.1784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig103contigS-ischiensis_contig103:229283..229939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size657
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig103.1784.1prot_S-ischiensis_contig103.1784.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig103 229470..229877 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815556.5901241-UTR-S-ischiensis_contig103:229282..2294691622815556.5901241-UTR-S-ischiensis_contig103:229282..229469Schizocladia ischiensis KU_0333UTRS-ischiensis_contig103 229283..229469 +
1695739767.7645884-UTR-S-ischiensis_contig103:229282..2294691695739767.7645884-UTR-S-ischiensis_contig103:229282..229469Schizocladia ischiensis KU_0333UTRS-ischiensis_contig103 229283..229469 +
1622815556.6177964-UTR-S-ischiensis_contig103:229877..2299391622815556.6177964-UTR-S-ischiensis_contig103:229877..229939Schizocladia ischiensis KU_0333UTRS-ischiensis_contig103 229878..229939 +
1695739767.7895992-UTR-S-ischiensis_contig103:229877..2299391695739767.7895992-UTR-S-ischiensis_contig103:229877..229939Schizocladia ischiensis KU_0333UTRS-ischiensis_contig103 229878..229939 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815556.6040184-CDS-S-ischiensis_contig103:229469..2298771622815556.6040184-CDS-S-ischiensis_contig103:229469..229877Schizocladia ischiensis KU_0333CDSS-ischiensis_contig103 229470..229877 +
1695739767.7778342-CDS-S-ischiensis_contig103:229469..2298771695739767.7778342-CDS-S-ischiensis_contig103:229469..229877Schizocladia ischiensis KU_0333CDSS-ischiensis_contig103 229470..229877 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig103.1784.1

>prot_S-ischiensis_contig103.1784.1 ID=prot_S-ischiensis_contig103.1784.1|Name=mRNA_S-ischiensis_contig103.1784.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=136bp
MHTATTSEARELALPALGGRQPRNGTYHPPLRPSCVLPDLLTTCHGALTF
IMMLRVNKPGLGPGKLSERKTGLVGTMLPAVSWSQLECTSLPIDHQGQRL
TDACVYYMLGACRPRKQGHHLAVYPSTRRTLYYMH*
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mRNA from alignment at S-ischiensis_contig103:229283..229939+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig103.1784.1 ID=mRNA_S-ischiensis_contig103.1784.1|Name=mRNA_S-ischiensis_contig103.1784.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=657bp|location=Sequence derived from alignment at S-ischiensis_contig103:229283..229939+ (Schizocladia ischiensis KU_0333)
GGGTTTTTAGGGTGCGCTTATACCTTTGTATTTAGGGGCACTGCGGCAAG
AGGTCAAGTACTCCAACCTACTTGCCCGCCTTGCGTACGCCCCCGAGAGC
CTCTATTCTGCTCGGCTTGAGGGAGGAGCCAGCCTGCCAAGCAGCTAACA
AAAACGTTTGTAACTTGAAGGAGGACCACGCCAGCACATGCATACAGCAA
CAACGTCGGAAGCACGGGAACTGGCCCTGCCAGCGCTTGGAGGGAGGCAG
CCCCGGAACGGTACTTATCACCCACCACTACGACCTTCGTGCGTTTTGCC
CGACCTCTTGACAACCTGTCACGGCGCCCTTACATTTATTATGATGCTCA
GAGTGAACAAGCCAGGTTTGGGGCCTGGTAAATTGTCAGAGCGCAAAACT
GGCCTAGTGGGAACCATGCTGCCTGCAGTTAGCTGGTCACAGCTTGAATG
CACCAGCCTACCCATTGACCACCAGGGCCAGAGGTTAACTGACGCATGCG
TATACTATATGCTGGGCGCATGCCGCCCCAGAAAGCAGGGACATCACCTA
GCCGTATACCCATCGACTCGCCGGACACTGTACTACATGCACTAGTCTAT
GCATTGATTGGCCGGCCGCCCGGCATCATCCTGCTCGAGCCGGCTGGTGG
CCAAAGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig103:229283..229939+

>mRNA_S-ischiensis_contig103.1784.1 ID=mRNA_S-ischiensis_contig103.1784.1|Name=mRNA_S-ischiensis_contig103.1784.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=816bp|location=Sequence derived from alignment at S-ischiensis_contig103:229283..229939+ (Schizocladia ischiensis KU_0333)
ATGCATACAGCAACAACGTCGGAAGCACGGGAACTGGCCCTGCCAGCGCT
TGGAGGGAGGCAGCCCCGGAACGGTACTTATCACCCACCACTACGACCTT
CGTGCGTTTTGCCCGACCTCTTGACAACCTGTCACGGCGCCCTTACATTT
ATTATGATGCTCAGAGTGAACAAGCCAGGTTTGGGGCCTGGTAAATTGTC
AGAGCGCAAAACTGGCCTAGTGGGAACCATGCTGCCTGCAGTTAGCTGGT
CACAGCTTGAATGCACCAGCCTACCCATTGACCACCAGGGCCAGAGGTTA
ACTGACGCATGCGTATACTATATGCTGGGCGCATGCCGCCCCAGAAAGCA
GGGACATCACCTAGCCGTATACCCATCGACTCGCCGGACACTGTACTACA
TGCACTAGATGCATACAGCAACAACGTCGGAAGCACGGGAACTGGCCCTG
CCAGCGCTTGGAGGGAGGCAGCCCCGGAACGGTACTTATCACCCACCACT
ACGACCTTCGTGCGTTTTGCCCGACCTCTTGACAACCTGTCACGGCGCCC
TTACATTTATTATGATGCTCAGAGTGAACAAGCCAGGTTTGGGGCCTGGT
AAATTGTCAGAGCGCAAAACTGGCCTAGTGGGAACCATGCTGCCTGCAGT
TAGCTGGTCACAGCTTGAATGCACCAGCCTACCCATTGACCACCAGGGCC
AGAGGTTAACTGACGCATGCGTATACTATATGCTGGGCGCATGCCGCCCC
AGAAAGCAGGGACATCACCTAGCCGTATACCCATCGACTCGCCGGACACT
GTACTACATGCACTAG
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