mRNA_S-ischiensis_contig103.1781.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig103.1781.1
Unique NamemRNA_S-ischiensis_contig103.1781.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig103.1781.1 vs. uniprot
Match: D7FHC9_ECTSI (Vesicle transport protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHC9_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 1.560e-56
Identity = 98/162 (60.49%), Postives = 120/162 (74.07%), Query Frame = 3
Query:   21 INIPGITR-QEPTFADEMCEACPTLTYQQRVIGFVVCVGVGYVFSFLGSMMLIGGGIREFAALYVLGSLIALSATGFLIGPKSQCKKMFKPTRRIACIVYLTLLVVVFAVAIAGLPVGLVLILLIIQCIAAVWYMASYIPYGRKMIKSVCCPCLKDLEEEGG 503
            +NIPG  R QEPT A+EMCE CP+LT+QQRV GFV C+ +GY+ SFL ++ML  G +  FA +Y LGSLIA+ AT FLIGP+ QC KMF   RRIAC++YL LL  V  +A  G P G++L++LI+Q  AAVWY ASYIPYGR MIK   CPCLKDLE + G
Sbjct:   35 VNIPGFRREQEPTLANEMCEMCPSLTFQQRVGGFVACLALGYLLSFLSTVMLWSGDLSSFALIYCLGSLIAIGATSFLIGPRRQCGKMFHKKRRIACVIYLVLLFAVIILAFLGTPAGIILLVLIVQMCAAVWYTASYIPYGRAMIKGTLCPCLKDLENQDG 196          
BLAST of mRNA_S-ischiensis_contig103.1781.1 vs. uniprot
Match: A0A835YKD4_9STRA (Vesicle transport protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKD4_9STRA)

HSP 1 Score: 186 bits (473), Expect = 9.650e-52
Identity = 101/167 (60.48%), Postives = 120/167 (71.86%), Query Frame = 3
Query:   21 INIPGITRQEPTF-----ADEMCEACPTLTYQQRVIGFVVCVGVGYVFSFLGSMMLIGGG---IREFAALYVLGSLIALSATGFLIGPKSQCKKMFKPTRRIACIVYLTLLVVVFAVAIAGLPVGLVLILLIIQCIAAVWYMASYIPYGRKMI-KSVCCPCLKDLEE 494
            I++PG     P       AD+MC  CPTLTYQQRVIGFV  + VGY+ SF+G+++LIGGG   IR FA LYVLG+LIALS TGFLIGPKS CKKMF   RR A I YL +L+VVF  A+AG  V +VL+LL+IQCIAAVWY ASYIPYGR MI  + C PC    ++
Sbjct:    7 ISVPGFRNTAPANEGGFNADDMCACCPTLTYQQRVIGFVTTMIVGYILSFVGTLLLIGGGPAGIRGFAVLYVLGNLIALSGTGFLIGPKSHCKKMFHKNRRFAAIFYLVMLLVVFIAAVAGAFVAIVLVLLVIQCIAAVWYTASYIPYGRTMIINTFCGPCKDSFKD 173          
BLAST of mRNA_S-ischiensis_contig103.1781.1 vs. uniprot
Match: F0Y4B6_AURAN (Vesicle transport protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4B6_AURAN)

HSP 1 Score: 169 bits (429), Expect = 1.500e-45
Identity = 87/154 (56.49%), Postives = 114/154 (74.03%), Query Frame = 3
Query:   45 QEPTFADEMCEACPTLTYQQRVIGFVVCVGVGYVFSFLGSMMLIGGG-----IREFAALYVLGSLIALSATGFLIGPKSQCKKMFKPTRRIACIVYLTLLVVVFAVAIAGLPVGLVLILLIIQCIAAVWYMASYIPYGRKMI----KSVCC-PC 476
            QE +F DE C+ CP LTYQQR+IGF  C G GY+ SF+G+MML  GG     IR FA LY++G+ IA++AT FL+GP+SQCKKMF  TRR + I +L  L+V FAVA+AG+ VG+V++L+ +Q  A++WY ASYIPYGR+MI    +S CC PC
Sbjct:    9 QEQSFEDEACDGCPKLTYQQRIIGFCACCGFGYLLSFMGTMMLAVGGPDAETIRNFATLYIVGNFIAIAATLFLLGPRSQCKKMFDKTRRFSTIFWLLTLIVTFAVAVAGVNVGVVVMLIFVQIGASIWYSASYIPYGRRMIVKIFQSTCCSPC 162          
BLAST of mRNA_S-ischiensis_contig103.1781.1 vs. uniprot
Match: A0A8J2WZP9_9STRA (Vesicle transport protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WZP9_9STRA)

HSP 1 Score: 166 bits (420), Expect = 3.170e-44
Identity = 81/141 (57.45%), Postives = 104/141 (73.76%), Query Frame = 3
Query:   48 EPTFADEMCEACPTLTYQQRVIGFVVCVGVGYVFSFLGSMMLIGGG-----IREFAALYVLGSLIALSATGFLIGPKSQCKKMFKPTRRIACIVYLTLLVVVFAVAIAGLPVGLVLILLIIQCIAAVWYMASYIPYGRKMI 455
            +PTF DEMC  CP++TYQQR+IGF +C G GY  SF+G++ML+        +  FA LYV G+ IA++ATGFLIGP+ QCKKMF  TRR ACI +L +LVV FA+ ++G+ VG VL+ L IQ  A +WY ASYIPYGR+MI
Sbjct:   14 QPTFEDEMCSMCPSMTYQQRLIGFCICCGCGYALSFMGTLMLLSKDPWKKRVTNFAILYVFGNFIAIAATGFLIGPRRQCKKMFSKTRRFACIFWLLMLVVTFALGLSGVDVGWVLLALFIQVCAGIWYSASYIPYGRRMI 154          
BLAST of mRNA_S-ischiensis_contig103.1781.1 vs. uniprot
Match: W7TZX0_9STRA (Vesicle transport protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZX0_9STRA)

HSP 1 Score: 160 bits (404), Expect = 6.960e-41
Identity = 84/146 (57.53%), Postives = 111/146 (76.03%), Query Frame = 3
Query:   27 IPGITRQEPTFADEMCEACPTLTYQQRVIGFVVCVGVGYVFSFLGSMMLIG---GGIREFAALYVLGSLIALSATGFLIGPKSQCKKMFKPTRRIACIVYLTLLVVVFAVAIAGLPVGLVLILLIIQCIAAVWYMASYIPYGRKMI 455
            +PG   QE +  +E+C  CP+LTYQQR+IGFV C  +GY+ SF+G++ LI     GIR FAALYV+G++IAL +TGFL+GPKSQCKKMF  TRR + I+Y+ +L+VVFAVA+A   V LVL LLIIQ + AVWY  SY+P+GR+ +
Sbjct:   23 LPGA--QEESVTEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTADGIRNFAALYVVGNIIALCSTGFLVGPKSQCKKMFDKTRRYSTILYIIMLIVVFAVALARQNVFLVLFLLIIQVLVAVWYTLSYVPFGRQAV 166          
BLAST of mRNA_S-ischiensis_contig103.1781.1 vs. uniprot
Match: H3H035_PHYRM (Vesicle transport protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H035_PHYRM)

HSP 1 Score: 139 bits (350), Expect = 2.770e-34
Identity = 76/138 (55.07%), Postives = 98/138 (71.01%), Query Frame = 3
Query:   60 ADEMCEACPTLTYQQRVIGFVVCVGVGYVFSFLGSMMLIGGGIR--EFAALYVLGSLIALSATGFLIGPKSQCKKMFKPTRRIACIVYLTLLVVVFAVAIAGLPVGLVLILLI-IQCIAAVWYMASYIPYGRKMIKSV 464
            +D +   CP+LT QQR++GFV C  +GY+ SF  +  LI G     +F   Y LG++I+L  +GFL+GPK Q K MFKP RRIA IVYL ++VVVF VAIA   +GLV++LL+ IQC AAVWY ASY+PYGRK+I  V
Sbjct:   47 SDSLPSTCPSLTKQQRMVGFVSCFVLGYLVSFGSTFALIAGSDNGTKFGITYTLGNIISLCGSGFLVGPKQQVKLMFKPVRRIATIVYLLMIVVVFTVAIAAPELGLVVLLLVLIQCAAAVWYSASYVPYGRKIIAGV 184          
BLAST of mRNA_S-ischiensis_contig103.1781.1 vs. uniprot
Match: A0A6A4CF76_9STRA (Vesicle transport protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A4CF76_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.330e-32
Identity = 74/137 (54.01%), Postives = 97/137 (70.80%), Query Frame = 3
Query:   63 DEMCEACPTLTYQQRVIGFVVCVGVGYVFSFLGSMMLIGGGIR--EFAALYVLGSLIALSATGFLIGPKSQCKKMFKPTRRIACIVYLTLLVVVFAVAIAGLPVGLVLILL-IIQCIAAVWYMASYIPYGRKMIKSV 464
            D +   CP+LT +QR+IGFV C  +GY+ SF  +  LI G     +F   Y LG++I+L  +GFL+GPK Q K MFKP RRIA I+YL ++VVV  VAIA   +GLV++LL IIQC AAVWY ASY+PYGRK++ S+
Sbjct:   51 DALTSTCPSLTKKQRMIGFVSCFVLGYLVSFGSTFALIAGSDNGTKFGITYTLGNIISLCGSGFLVGPKQQVKLMFKPVRRIATIIYLLMIVVVLTVAIAAPRLGLVVLLLVIIQCGAAVWYSASYVPYGRKILTSI 187          
BLAST of mRNA_S-ischiensis_contig103.1781.1 vs. uniprot
Match: A0A3R7HSX0_9STRA (Vesicle transport protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HSX0_9STRA)

HSP 1 Score: 132 bits (332), Expect = 8.550e-32
Identity = 70/138 (50.72%), Postives = 99/138 (71.74%), Query Frame = 3
Query:   60 ADEMCEACPTLTYQQRVIGFVVCVGVGYVFSFLGSMMLIGGGIR--EFAALYVLGSLIALSATGFLIGPKSQCKKMFKPTRRIACIVYLTLLVVVFAVAIAGLPVGLVLILLI-IQCIAAVWYMASYIPYGRKMIKSV 464
            +D +  +CP+LT +QR+IGF  C  +GY+ SF  +  LI G     +F   Y LG++I+L  +GFL+GPK Q K MFKP RR+A ++YL ++VVV +VAIA   +GLV++LL+ IQ +AAVWY ASYIPYGRK++ S+
Sbjct:   49 SDSLTSSCPSLTKRQRMIGFASCFCLGYLISFGSTFALIAGSDNGAKFGITYSLGNIISLCGSGFLVGPKQQVKLMFKPVRRVATVIYLLMIVVVLSVAIAAPELGLVVLLLVFIQLLAAVWYSASYIPYGRKILASI 186          
BLAST of mRNA_S-ischiensis_contig103.1781.1 vs. uniprot
Match: A0A1V9ZRH9_9STRA (Vesicle transport protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZRH9_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.430e-31
Identity = 74/161 (45.96%), Postives = 102/161 (63.35%), Query Frame = 3
Query:   15 SGINIPGITRQEPTFADEMCEACPTLTYQQRVIGFVVCVGVGYVFSFLGSMMLIGGGI--REFAALYVLGSLIALSATGFLIGPKSQCKKMFKPTRRIACIVYLTLLVVVFAVAIAGLPVGL-VLILLIIQCIAAVWYMASYIPYGRKMIKSVCCPCLKDL 488
            + I +PG T  + +  +  C  C  LT +QR+ GF  C  +GY+ SF+ +  LI G     +F  LY LG++IAL  +GFL+GP  Q K M KP RRIA  +Y+ ++V+V  VAI    +GL +L+L+IIQ  AAVWY ASYIPYGRKMIK++   C K +
Sbjct:   20 ANIKVPGTTASDSSMEEASC-GCQKLTKKQRMYGFGTCFVLGYIISFVSTFALISGSRDGAKFGILYSLGNVIALCGSGFLVGPAQQIKLMMKPVRRIAAALYVLMIVLVLVVAILAPHLGLLILLLVIIQFCAAVWYSASYIPYGRKMIKTLGSKCFKSM 179          
BLAST of mRNA_S-ischiensis_contig103.1781.1 vs. uniprot
Match: A0A0P1A5L8_PLAHL (Vesicle transport protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A5L8_PLAHL)

HSP 1 Score: 131 bits (329), Expect = 2.070e-31
Identity = 74/157 (47.13%), Postives = 103/157 (65.61%), Query Frame = 3
Query:    3 TSRTSGINIPGITRQEPTFADEMCEACPTLTYQQRVIGFVVCVGVGYVFSFLGSMMLIGGGIR--EFAALYVLGSLIALSATGFLIGPKSQCKKMFKPTRRIACIVYLTLLVVVFAVAIAGLPVGLVLILLII-QCIAAVWYMASYIPYGRKMIKSV 464
            T++TS  N   +        D     CP LT +QR+IGF+ C  +G++ SF  +  LI G     +F   Y LG++I+L  +GFL+GPK Q K MFKP RRIA I+YL ++VVV  VA+    +GLV++LL+I QC+AAVWY ASYIP+GRK++KS+
Sbjct:   36 TNKTSASNASSL--------DMFNSTCPNLTKKQRMIGFISCFVLGFLVSFGSTFALIVGSDNGTKFGITYSLGNIISLCGSGFLVGPKQQVKLMFKPLRRIATIIYLAMIVVVLVVALTAPQLGLVVLLLVIVQCVAAVWYSASYIPFGRKVLKSI 184          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig103.1781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHC9_ECTSI1.560e-5660.49Vesicle transport protein n=2 Tax=Ectocarpus TaxID... [more]
A0A835YKD4_9STRA9.650e-5260.48Vesicle transport protein n=1 Tax=Tribonema minus ... [more]
F0Y4B6_AURAN1.500e-4556.49Vesicle transport protein n=1 Tax=Aureococcus anop... [more]
A0A8J2WZP9_9STRA3.170e-4457.45Vesicle transport protein n=1 Tax=Pelagomonas calc... [more]
W7TZX0_9STRA6.960e-4157.53Vesicle transport protein n=2 Tax=Monodopsidaceae ... [more]
H3H035_PHYRM2.770e-3455.07Vesicle transport protein n=1 Tax=Phytophthora ram... [more]
A0A6A4CF76_9STRA1.330e-3254.01Vesicle transport protein n=2 Tax=Phytophthora Tax... [more]
A0A3R7HSX0_9STRA8.550e-3250.72Vesicle transport protein n=3 Tax=Phytophthora ker... [more]
A0A1V9ZRH9_9STRA1.430e-3145.96Vesicle transport protein n=1 Tax=Achlya hypogyna ... [more]
A0A0P1A5L8_PLAHL2.070e-3147.13Vesicle transport protein n=1 Tax=Plasmopara halst... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig103contigS-ischiensis_contig103:142942..148816 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score175.6
Seed ortholog evalue1.7e-41
Seed eggNOG ortholog2880.D7FHC9
EggNOG free text desc.vesicle-mediated transport
EggNOG OGsCOG5102@1,KOG2887@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionVesicle transport protein, Got1/SFT2-like
Ec32 orthologEc-03_003950.1
Exons4
Model size2067
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig103.1781.1prot_S-ischiensis_contig103.1781.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig103 144497..146735 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815558.0301576-UTR-S-ischiensis_contig103:142941..1444961622815558.0301576-UTR-S-ischiensis_contig103:142941..144496Schizocladia ischiensis KU_0333UTRS-ischiensis_contig103 142942..144496 -
1695739768.7284684-UTR-S-ischiensis_contig103:142941..1444961695739768.7284684-UTR-S-ischiensis_contig103:142941..144496Schizocladia ischiensis KU_0333UTRS-ischiensis_contig103 142942..144496 -
1622815558.0758195-UTR-S-ischiensis_contig103:146735..1467561622815558.0758195-UTR-S-ischiensis_contig103:146735..146756Schizocladia ischiensis KU_0333UTRS-ischiensis_contig103 146736..146756 -
1695739768.7708812-UTR-S-ischiensis_contig103:146735..1467561695739768.7708812-UTR-S-ischiensis_contig103:146735..146756Schizocladia ischiensis KU_0333UTRS-ischiensis_contig103 146736..146756 -
1622815558.0878198-UTR-S-ischiensis_contig103:148769..1488161622815558.0878198-UTR-S-ischiensis_contig103:148769..148816Schizocladia ischiensis KU_0333UTRS-ischiensis_contig103 148770..148816 -
1695739768.7796216-UTR-S-ischiensis_contig103:148769..1488161695739768.7796216-UTR-S-ischiensis_contig103:148769..148816Schizocladia ischiensis KU_0333UTRS-ischiensis_contig103 148770..148816 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815558.0418808-CDS-S-ischiensis_contig103:144496..1446521622815558.0418808-CDS-S-ischiensis_contig103:144496..144652Schizocladia ischiensis KU_0333CDSS-ischiensis_contig103 144497..144652 -
1695739768.7419477-CDS-S-ischiensis_contig103:144496..1446521695739768.7419477-CDS-S-ischiensis_contig103:144496..144652Schizocladia ischiensis KU_0333CDSS-ischiensis_contig103 144497..144652 -
1622815558.0517497-CDS-S-ischiensis_contig103:145075..1451871622815558.0517497-CDS-S-ischiensis_contig103:145075..145187Schizocladia ischiensis KU_0333CDSS-ischiensis_contig103 145076..145187 -
1695739768.7504258-CDS-S-ischiensis_contig103:145075..1451871695739768.7504258-CDS-S-ischiensis_contig103:145075..145187Schizocladia ischiensis KU_0333CDSS-ischiensis_contig103 145076..145187 -
1622815558.0651255-CDS-S-ischiensis_contig103:146559..1467351622815558.0651255-CDS-S-ischiensis_contig103:146559..146735Schizocladia ischiensis KU_0333CDSS-ischiensis_contig103 146560..146735 -
1695739768.7615578-CDS-S-ischiensis_contig103:146559..1467351695739768.7615578-CDS-S-ischiensis_contig103:146559..146735Schizocladia ischiensis KU_0333CDSS-ischiensis_contig103 146560..146735 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig103.1781.1

>prot_S-ischiensis_contig103.1781.1 ID=prot_S-ischiensis_contig103.1781.1|Name=mRNA_S-ischiensis_contig103.1781.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=148bp
MCEACPTLTYQQRVIGFVVCVGVGYVFSFLGSMMLIGGGIREFAALYVLG
SLIALSATGFLIGPKSQCKKMFKPTRRIACIVYLTLLVVVFAVAIAGLPV
GLVLILLIIQCIAAVWYMASYIPYGRKMIKSVCCPCLKDLEEEGGSG*
back to top

mRNA from alignment at S-ischiensis_contig103:142942..148816-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig103.1781.1 ID=mRNA_S-ischiensis_contig103.1781.1|Name=mRNA_S-ischiensis_contig103.1781.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5875bp|location=Sequence derived from alignment at S-ischiensis_contig103:142942..148816- (Schizocladia ischiensis KU_0333)
GGACAAGTCGCACGTCGGGCATCAACATACCCGGCATCACACGGCAGGTG CGGTTGTTAGCGGCATTGGTCTGAACACCGTCCCAGACCCTCGGAGTGCG GGAAGATAATATGCGTGTGGCTAGTCTCGGGCGGCTTTGGGCAGCAACTT GCAAATCAAGTCTTGGCTGGGCCTTGCGGAAAGCGCTCAGGCATCTTGGG CCAGGGCATCATGGCAGGCAAACGCAAGTAGTACTGTACTGCCGAACATG AGTCGCCTGCTGCGACGAATTACCCTTGCATGGGCTACTTTTCCTGTGAA TCCATGTTGGACCATTGCCATTACCACCGATCAGCCCCCGAGGTCCGCAG GGTGTAGGCCGTTGGCCTCGCATCCCTACTATGCCGGGACGAAGCACGCC AGTTTTTCTCCGGCCAGACTGCTTATACCATGCGCTGCTACTACTGTAGT ACTCCGTCTCGGTTGAGGCGCGTGGTCAATGGTCTCAGGAATACGGCAAG CACAACATGAGTACATGCATATACGAAGTATATATATAGTAGTACTATAT GCATGTAGAAGTACTCGTGCTTGCCGTGTATATATGCATATACTCATGTT GTGCTGGCCGTAGTCCCGAGACCATTGACCACGCGCCTCGGTCGAGACGG AGCAATACACGCATACAACCTACAGAAAGTATGTTCACTGTACAGTACAG CGGTACTGCGCAGTACTGTGTGCTTCGAAGTACTACCTGTACGTAGTAGA CTCAATAGTGTCGCCCTGCCGTCTGCACCAAATCAGCGACGTTGTTGGTT GGCGTGTATGTGGCGTGAGCTTTCTTTTATTTTTCTTTCCGCTGCCAATG CAGTGCGGTACACGTCTCACCGCGGATCGATTCTTATGTTCTCTTGGTCT GAGCTGTACAGTATATATGTATGTACTCACGTTGTGCTTGCCGTCGTCCC GAGACCATTGAGCACGCGCCTCGGTCGAGACGGAGCAGGTCTGAGCTGTA CAGTACATAATCTACTGCGCGCTTAGTGCTTCGCACGATCAGAGTACTGT ACAGTGTTACGTAAATATCAATTGTTATACGGGCCACCATCCTGCTACTT GCAGTACGAGTACAGTACAAGACAGAACCGTATGTACTGAACAGTTTGTA TATGTATATGAACAGTTTGTACTGTAGTATTTTAAGAAACAGCACAGGGC GAGGTGCGGGCCATGTCACTAGAGACCTCAACAAGGGCCCTTCCTTAGCT CGCCAGGGCAAAGTTGTGTGGGGAAGGGGGAGGTGGACGGGGTAATCGCG CAATAGCCATGCACTGCACTGTGCTGTGCTGTACAGTAGTCGTGTTTGGC CTTAAGGGATTCCGTTAAGTTCAGTTCAATTCAATTCAATTCAATTCTTC CTTGGCGAGGGCGAAGGCTGTGCCTCTACCATCACACTTTTGCACAGCAT GTTTGTTAGAAAGCATGGTTGTCTCCCCCATGTCATGTGATGTGATTTGG TGCCATGTGCGTTTGTGCTACAGTAGTACCGGTACGAGTACGCAAAAATT CAGTTTCGATACCACATCACATCAACACATAAATAGAGTACTCCTGTCGG AGGGCAAAACCCGAATTTTCGTCTTGGGGCTGTCGGCAAAGCACGCAAGG TTATGTCGCAACACAAGCCAGTGAGTGCATATACTCGTATGAAGTACATA TATACCATAGTTCTCCGTCTCGACCGAGGTGCGTTGTCAATGGTCTCGGG ACTACGGCAAGCACACCGTGAGTACTCGCACATATATATATGCATCACGT CACATCTCATCACACGGCACCGCGCGACATCCGCCACCCCGCCCCGCACC AGTGATGGAATACCTACGCAAATGAACCTATTTGTCGACAGCACTGATCT ATACATCTATCGATAGTCGATATTCGATCATTTGACCCACACTAAATCCA AGTACTTTGTAGTTAGCAACGCCACCCACAAAATCAGCCGAGCCCCATAG CCATCTACAGTACTGATCGATATTCCATCCCTGTCCACCACCCCACCCCC CCATCACCAGGAGCCCACGTTCGCCGATGAGATGTGCGAGGCGTGCCCCA CGCTGACGTACCAGCAAAGGGTCATTGGCTTTGTGGTCTGCGTGGGCGTG GGATACGTCTTCTCCTTCCTTGGGTCTATGATGCTCATCGGGGGCGGGAT CCGGGAGTTTGCAGCCTTGTACGTCCTGGGCTCCTTGATTGCGCTTTCCG CCACGGGGTGAGTGAGTGAGATGGTGATTCATATAAATTTTGCTTCCGGA AGTAATGATTGCGGCCTTGTAAGTCCTGGGCTCCTTGATTGCGCTTTCTG CCACGGGGTGAGTTCGGGAGATGGTGATTCATATGCATTGTAACGAGGTG CAATTGCACGTGCATGAGATTGAGTGTTCTCGTATTAGTGGTTGTCAGTG AGTGAGGGAGGCTCGGCCAGGCGGTCAGGTCAGGTCAGGTCTGGTCTGGT CGGGGGGCTACTAGTATGGCATGCGGCCGAGCTGTGACCTTGGTAGGATA CATGACCTCCTCTTTCTGTTAGATGGATGCGAGTATAATGTTGCTACAGT ATGTACTGCTCGTAGCAACGCCTTGTGACCTTGGTATGTGGCCTCCTCTT TCTGTTGGATATATATACATAATTATATGTACTCACGTGGTGCGTGCCGT GGTCCCGAGACCATTGACCACGTGACTTGGTCGAGACGGAGCAGGCATAC TCTGCAAGTACAATGTTTCTACAGTATGTAATGCTTGTAGCAAGGCTTTG TGCGTTGGATGTATTGTGTGCACGAGTACAGTATACCTACGGTAGTGTAT TTCCAAGCGTGGAGTGGGGCTAGTCGGATGTGCAGGAGGGCGCCCGCATT TCGCTTGTGACAGCCGTGCTTGTTCCCAGCACTCGTGGAGCCATGACAGC CCGACCATGCCGCTGTCAGCTCTTCGCAGCCGAAGTATTACGTGGGGTGA TGTGTACAGTACTCGTGGAAACGTCCGGTATGTACTACTGTAGAGCTCTA CTACGGTACTCGATTATATATATATGTACTCACGTGGTGCTTGCCGTAGT CCCGAGACCATTGACCCCGCGCCTCGTGCGAGACGGAGCAGTACTCGATT GCCGTATTAATGTACTACTCGTACTGTAGAGCTCTACTACTGTACTGTAC TCGAGTACTACTATGCATTGCTGTACTACTGTACTTGAGTGCAGTGCTAC TGTACTCGAGTCTCCACTACAAACCGTACTGTACAGTACTTTAAAGTGGG GATGCGTGGTCTTGGTTAGCCCGTGCCTGCGGGGGTATTGCTGGTACTGA TCGGTGGTACATCAGGGAGCATACTGGGCCGACAGTCGGTGGCATGCATG CACAGGACATGGGGTCATAGCCCTGTCCGACGTGACTATTCTACATGCTG TGATGCGATGTGATGTGTACTCTATTTTACTTTATTTTCACATCAAGAGA TAAGCCCAAGCCAACCCCCTTCCCACCTGCCCTGCTCCCTCCCGCTCTCG TCCCTCCCCTCGCTTGCCTTGGTTTCCATCCTGGGCTCGGGCACCTGGTC TGTCTGATTGGTCAACTGGTTGACTGAAGCTTCCTGATTGGGCCCAAGAG TCAGTGCAAGAAAATGTTCAAGCCAACAAGACGGATCGCGTGCATCGTGT ACCTGACGCTCCTTGTCGTTGTCTTCGCCGTCGCGATAGCGGTGAGTGGC TCGGTTCGCGGTGTTGTGTCTGTGTGTGTTCATGTGTTTCTACAGTAGCG CTTGTGTGTGTATGTGTGCACGTGTGCGTGTGTGTGTGTGTACGTGTGTA CATGTGTGTGTGTGTACGTGTGTACATGTGTGTGTTTACGAGTATGTGTG GGCACGCGGCTGAACCTGCCACACCACCTACTGCACTGCACCATCCACCC GGCTACCAGCGATGGAATATTTTAGCAAGTCAACCTGTGTATCGACAGTA CGGATCTACGAAGTATATATCTATGGATAGTCGGTATTCGATAGTTTGAC CCACACTAAATCCAAGTACTTTGAAGTAGTTGGTAATGCCACCAACAAAA TCAGTCGAGCCCGATAACTATCTACTGATCGATATTCCATCACTGCCGGC TACCCGGTGCACAGGGGCTGCCGGTTGGACTGGTGCTCATCCTGCTCATC ATCCAGTGCATAGCCGCCGTGTGGTACATGGCTAGCTACATCCCCTACGG GCGCAAGATGATCAAGAGCGTGTGCTGCCCCTGCCTAAAGGACCTGGAGG AAGAGGGCGGCTCAGGATAACGCCGCATACCACACCGTGAAACCCTCGCC CCCCGGGGTACAACACAATACTTCCAAGCACGGTATACTTCCTCTAGCGT ACTCTAGGGTGCTGTTGTGCACTCCAGTGCCCCTGCCCAAGGGCCCTGGA GGAAGAGGGCGGCTCAGGAAAACGCCGCGTAGTACACCGTGCAAACCCTC GCCCCCCCGAGGTACAACACAGTACCTCCAAGCACAGTAGAGTACACTTC CTCTGGTGTACTCTAGTGTGCTCTTGTGCAAGAGTTCCCGTGTAGAGTAC TGCCATCCGCTTCCTACTGCGGTTGCAAAGGCCAAAGCGGTTGTTTTGCC CTGGCCCTTGTGGCCGCCGCTTGTTGGACAAAGGCAGGGGGTGGGGCAAG GAGCCGCCAGTTACCCCCTCCAAGCTCGAGCTTGTCTTGCCCTAGGCTAA GGCATTGCCGCAAGTACAGTACAAGCACTGTATGTGTAGTATACCTAGTA CAAGTACTTCCGAGTGGCTAAGTAGGAGTGTGGGAAGATAGAGCTAGGTG GCGTTTTCCGTGGTGTGCGTGTACCGCTTCCGGGGGCGGCGGACGTGTGC ACTACACTGCCACTGTGGGCCATGTGCACTACAATGCCACTGTACAGCCG GGTCGCTCAGTGTGTTCAAGCCGGCGTCACGAGTGAATTCCGCGCGCGCA TGGCGTACGTGCGGCACTGCGAGCTTGCAGCTGTACTCGTACATGTGCTT CGAAGTGCATGATGGCATGCCTGTAGATGTACTCGTACTCGAACTCGAGT ACTCGTACAAGAAGGTCATGATGGCATGTCTGTAGATACTGGTAGACACC TGCCGGGCTCCTGATCCTGCCACCGCTGCCGCCACGGCCGCCCCGCCGGC AAAAGTTGCCTCTCTCCCTGTTTCAAGGCAGTGCTGCAATTGCAGTGTAG CATGGCCAGGGCTGGGGTTCTCTCGCTGGGAGCGCGGCCACCGTAAGTAA ATAGTACTCGTACCTGGATGCGGTGCCTCCCAAACCGTCAGCGGGGAGGG ACTGCAGGCCAAGTGTCTTTCTTGGAAACATATCCTGCACCTTTCGGTGC CTGCGCTATACACCTGCTGTACGTGTAAGTGTACAATGTCGTGGCCTTGG GTGCAATGGTACTCAACAAGTACAAGGTGCCACTATACTGGTCAGCTGTG GGATGCTCCGTGGATGCTGTATATGGTTTCGTCATGTACTGTAGTACTTC GAAGTATTGAGCAGAGCACTGGAGTGTTGGACTGGGCCGGGTGTTGATTC ATATAAATTGTAACGAGGCACAATCACACTGGGCCGGGTGTGTCGTGGGG CTCCGGGCCCCCCCCCCTCTTTGACGAGATAAGCCAGGAGCCCTCGGCAC AAAGACGATGGCTATGGAGGTCACTACTGTACAGTATCCCCCTCTTGAAA GCATATGGCCGACTGTGACGTGAACGGCTGGGTGGGACCGCAAGACCTCC AGTGCTTTGCAGGACTCGCCATCACCTTGGACTTACAGCACGAGTTCGCA ACAATCAAACACACAATTTCAGGCG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig103:142942..148816-

>mRNA_S-ischiensis_contig103.1781.1 ID=mRNA_S-ischiensis_contig103.1781.1|Name=mRNA_S-ischiensis_contig103.1781.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=888bp|location=Sequence derived from alignment at S-ischiensis_contig103:142942..148816- (Schizocladia ischiensis KU_0333)
ATGTGCGAGGCGTGCCCCACGCTGACGTACCAGCAAAGGGTCATTGGCTT
TGTGGTCTGCGTGGGCGTGGGATACGTCTTCTCCTTCCTTGGGTCTATGA
TGCTCATCGGGGGCGGGATCCGGGAGTTTGCAGCCTTGTACGTCCTGGGC
TCCTTGATTGCGCTTTCCGCCACGGGATGTGCGAGGCGTGCCCCACGCTG
ACGTACCAGCAAAGGGTCATTGGCTTTGTGGTCTGCGTGGGCGTGGGATA
CGTCTTCTCCTTCCTTGGGTCTATGATGCTCATCGGGGGCGGGATCCGGG
AGTTTGCAGCCTTGTACGTCCTGGGCTCCTTGATTGCGCTTTCCGCCACG
GGCTTCCTGATTGGGCCCAAGAGTCAGTGCAAGAAAATGTTCAAGCCAAC
AAGACGGATCGCGTGCATCGTGTACCTGACGCTCCTTGTCGTTGTCTTCG
CCGTCGCGATAGCGCTTCCTGATTGGGCCCAAGAGTCAGTGCAAGAAAAT
GTTCAAGCCAACAAGACGGATCGCGTGCATCGTGTACCTGACGCTCCTTG
TCGTTGTCTTCGCCGTCGCGATAGCGGGGCTGCCGGTTGGACTGGTGCTC
ATCCTGCTCATCATCCAGTGCATAGCCGCCGTGTGGTACATGGCTAGCTA
CATCCCCTACGGGCGCAAGATGATCAAGAGCGTGTGCTGCCCCTGCCTAA
AGGACCTGGAGGAAGAGGGCGGCTCAGGATAAGGGCTGCCGGTTGGACTG
GTGCTCATCCTGCTCATCATCCAGTGCATAGCCGCCGTGTGGTACATGGC
TAGCTACATCCCCTACGGGCGCAAGATGATCAAGAGCGTGTGCTGCCCCT
GCCTAAAGGACCTGGAGGAAGAGGGCGGCTCAGGATAA
back to top