mRNA_S-ischiensis_contig103.1773.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig103.1773.1 vs. uniprot
Match: D7FHC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHC4_ECTSI) HSP 1 Score: 108 bits (271), Expect = 2.320e-24 Identity = 84/203 (41.38%), Postives = 113/203 (55.67%), Query Frame = 1
Query: 190 GVPAQGVTTGRTPEVRATACRLGRD-GRNAWVTAVSCQG--KLPVSWLSR--HGGLGVRGGS---DDPFTARVQYMITRNMRKVLVDDLNYLPEEVDDMEPQIAAVVIQKNLPRPRSGMPIAWRKSIRQRPPPS-PLSRLAAAV---------SSVVLSPFRALRAG-----ARNAGKAAVPLATLAGAGAAVVLLTSDAAAG 729
GV +G+ +T ++ A R G A C +L ++ SR LG+RGG+ D + AR+Q +ITRNMRKVL+D+L Y +EVDDM+PQIAAVVI+K+LPRPR+GMPIAWR+SIRQ S P+ LA AV +V +S F + AG A+ G + LA + VL+TS A G
Sbjct: 2 GVLGKGIAAAKTSQLAVPAAESARPRGNLGSERACGCGSARRLHRAFASRGRRAALGLRGGAPAVSDRYNARMQVIITRNMRKVLMDELGYAADEVDDMDPQIAAVVIEKSLPRPRAGMPIAWRRSIRQTGSSSNPVQLLAGAVLAAVGAVVNGAVAVSAFPFVAAGKGIGAAKAGGVKGAAVTLLALSVVTAVLVTSSALGG 204
BLAST of mRNA_S-ischiensis_contig103.1773.1 vs. uniprot
Match: A0A6H5K5S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5S7_9PHAE) HSP 1 Score: 101 bits (251), Expect = 3.210e-20 Identity = 59/100 (59.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query: 328 RHGGLGVRGGS---DDPFTARVQYMITRNMRKVLVDDLNYLPEEVDDMEPQIAAVVIQKNLPRPRSG---MPIAWRKSIRQRPPPS-PLSRLAAAVSSVV 606
R LG+RGG+ D + AR+Q MITRNMRKVL+D+L Y +EVDDM+PQIAAVVI+K+LPRPR+G MPIAWR+SIRQ S P+ LA V + V
Sbjct: 157 RRVALGLRGGALAVSDRYNARMQVMITRNMRKVLMDELGYAADEVDDMDPQIAAVVIEKSLPRPRAGEECMPIAWRRSIRQTGSSSNPVQLLAGVVLAAV 256
BLAST of mRNA_S-ischiensis_contig103.1773.1 vs. uniprot
Match: A0A7S3MDN6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MDN6_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 7.700e-17 Identity = 47/101 (46.53%), Postives = 65/101 (64.36%), Query Frame = 1
Query: 355 GSDDPFTARVQYMITRNMRKVLVDDLNYLPEEVDDMEPQIAAVVIQKNLPRPRSGMPIAWRKSIRQRPPPSPLSRLAAAVSSVVLSPFRALRAGARNAGKA 657
G D +A+VQ+MIT M+ L D+L YLPEEV+DMEPQIA+VVI+++L RP+ GMP++WR+S + P+ +VLS R R R+ GKA
Sbjct: 55 GEDQSNSAKVQFMITNKMKATLKDELGYLPEEVEDMEPQIASVVIERSLTRPKKGMPVSWRRSYAAKAKPN----------IIVLSLQRLRRTVQRSYGKA 145
BLAST of mRNA_S-ischiensis_contig103.1773.1 vs. uniprot
Match: A0A835YK24_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK24_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 2.490e-16 Identity = 50/94 (53.19%), Postives = 62/94 (65.96%), Query Frame = 1
Query: 406 MRKVLVDDLNYLPEEVDDMEPQIAAVVIQKNLPRPRSGMPIAWRKSIRQRPPPS--PLSRLAAAVSSVVLSPFRALRAGARNAGKAAVPLATLA 681
MRK L D L+Y EEV+DMEPQIAA+VI+K LPRPR+GMPIAWRKS R+R S P SR AA+ V P + A + A+P+A +A
Sbjct: 1 MRKTLTDSLHYTEEEVNDMEPQIAAIVIEKGLPRPRAGMPIAWRKSFRRRESASRGPSSRALAAIRGVAAGPVAVFSSTAAVLRRVALPVAAVA 94
BLAST of mRNA_S-ischiensis_contig103.1773.1 vs. uniprot
Match: A0A7S2XQL8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XQL8_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 3.210e-11 Identity = 36/63 (57.14%), Postives = 42/63 (66.67%), Query Frame = 1
Query: 346 VRGGSDDPFTARVQYMITRNMRKVLVDDLNYLPEEVDDMEPQIAAVVIQKNLPRPRSGMPIAW 534
++ S T VQYMIT NMR+VLVD+L YLP EV M P +AAVV+ K L RP SGMP W
Sbjct: 114 IQEDSPSTTTTSVQYMITLNMRRVLVDELGYLPREVKHMRPDVAAVVVDKMLKRPSSGMPTPW 176
BLAST of mRNA_S-ischiensis_contig103.1773.1 vs. uniprot
Match: A0A7S2P8A3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P8A3_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 6.860e-11 Identity = 37/78 (47.44%), Postives = 55/78 (70.51%), Query Frame = 1
Query: 382 VQYMITRNMRKVLVDDLNYLPEEVDDMEPQIAAVVIQKNLPRPRSGMPIAW---RKSIRQRPPPSPLSRLAAAVSSVV 606
VQ++ITR MRK+L+ +LNY P EVD M ++AAVVI+K+L RP SGMP AW R S + + P+ + ++ ++SV+
Sbjct: 193 VQFVITRRMRKMLIYELNYTPSEVDQMRAEVAAVVIEKHLKRPPSGMPAAWAEIRDSYQSKKQPTLVPKVKKIIASVL 270
BLAST of mRNA_S-ischiensis_contig103.1773.1 vs. uniprot
Match: W7TF16_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TF16_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 6.650e-9 Identity = 31/64 (48.44%), Postives = 44/64 (68.75%), Query Frame = 1
Query: 364 DPFTARVQYMITRNMRKVLVDDLNYLPEEVDDMEPQIAAVVIQKNLPRPRSGMPIAWRKSIRQR 555
D + A++Q++IT M+KVL ++L+Y EV+ M P +AAVVI K+L RP+ GMP WRK R
Sbjct: 210 DKYNAKMQWLITNKMKKVLREELHYEAAEVEAMMPDVAAVVINKHLERPKRGMPAEWRKDFHLR 273
BLAST of mRNA_S-ischiensis_contig103.1773.1 vs. uniprot
Match: A0A7S0S7R1_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0S7R1_9CHLO) HSP 1 Score: 57.4 bits (137), Expect = 1.430e-6 Identity = 27/58 (46.55%), Postives = 42/58 (72.41%), Query Frame = 1
Query: 373 TARVQYMITRNMRKVLVDDLNYLPEEVDDMEPQIAAVVIQKNLPRP--RSGMPIAWRK 540
TA +Q+MIT M+ L+D+L +LPEEV+ M+P++A VI+K + RP + MP AW++
Sbjct: 5 TASLQFMITNAMKGTLIDELGFLPEEVEVMKPEVAKEVIEKRMNRPFGKRPMPDAWKR 62
BLAST of mRNA_S-ischiensis_contig103.1773.1 vs. uniprot
Match: A0A7S4IQ15_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IQ15_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 2.400e-6 Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 1
Query: 367 PFTARVQYMITRNMRKVLVDDLNYLPEEVDDMEPQIAAVVIQKNLPRPRSGMP 525
P A VQY ITRNMR++LV +L Y EV+ M+P +AAV+ K L RP GMP
Sbjct: 193 PSIATVQYAITRNMRRLLVQELGYTRHEVERMKPDVAAVLTTKRLRRPGGGMP 245
BLAST of mRNA_S-ischiensis_contig103.1773.1 vs. uniprot
Match: A0A7S0KVL4_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KVL4_MICPS) HSP 1 Score: 56.6 bits (135), Expect = 2.730e-6 Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 1
Query: 382 VQYMITRNMRKVLVDDLNYLPEEVDDMEPQIAAVVIQKNLPRPRSG--MPIAWRK 540
+Q+MIT MR L+D+L + PEEVD M P++AA +I+K + RP MP AW+K
Sbjct: 6 IQFMITSAMRATLIDELEFKPEEVDVMRPEVAAELIEKKMKRPFGNREMPDAWKK 60 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig103.1773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig103.1773.1 >prot_S-ischiensis_contig103.1773.1 ID=prot_S-ischiensis_contig103.1773.1|Name=mRNA_S-ischiensis_contig103.1773.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=304bp DEGVARAQDTLGSRVPSHGRETMVCSPSRSMLAVGAATVLASLASASASAback to top mRNA from alignment at S-ischiensis_contig103:49296..54952+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig103.1773.1 ID=mRNA_S-ischiensis_contig103.1773.1|Name=mRNA_S-ischiensis_contig103.1773.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5657bp|location=Sequence derived from alignment at S-ischiensis_contig103:49296..54952+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig103:49296..54952+ >mRNA_S-ischiensis_contig103.1773.1 ID=mRNA_S-ischiensis_contig103.1773.1|Name=mRNA_S-ischiensis_contig103.1773.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1824bp|location=Sequence derived from alignment at S-ischiensis_contig103:49296..54952+ (Schizocladia ischiensis KU_0333)back to top |