mRNA_S-ischiensis_contig102.1760.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig102.1760.1
Unique NamemRNA_S-ischiensis_contig102.1760.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig102.1760.1 vs. uniprot
Match: A0A1R1LV75_9MICC (Methyltransf_25 domain-containing protein n=1 Tax=Tersicoccus sp. Bi-70 TaxID=1897634 RepID=A0A1R1LV75_9MICC)

HSP 1 Score: 72.8 bits (177), Expect = 5.850e-13
Identity = 51/109 (46.79%), Postives = 61/109 (55.96%), Query Frame = 1
Query:  115 AAREEQRAFWEGAYKSNPDSVRV----DNRLLRQAISSLAPGEAAGTALDLGCGAGDTALELAAAGWTVTGVDLSEKAVALARAAAEARGLGGKAFFVAGDAAEWPQSG 429
            AA    R FWE  Y+   D  RV     N  + +A+S L PG+A    LDL CG G  A+ LA  GWTVTGVD++  AV  AR AAE RG G  A FVA D  +W  +G
Sbjct:    9 AADRSPRQFWEHRYR---DEQRVWSGRPNPAVVEAVSPLPPGKA----LDLACGEGADAIWLAGRGWTVTGVDIASTAVDRARRAAEDRGQGDVARFVAADLTDWEPAG 110          
BLAST of mRNA_S-ischiensis_contig102.1760.1 vs. uniprot
Match: A0A5B7WX69_9MICC (Class I SAM-dependent methyltransferase n=2 Tax=Glutamicibacter TaxID=1742989 RepID=A0A5B7WX69_9MICC)

HSP 1 Score: 71.2 bits (173), Expect = 2.340e-12
Identity = 48/94 (51.06%), Postives = 54/94 (57.45%), Query Frame = 1
Query:  139 FWEGAY-KSNPDSVRVDNRLLRQAISSLAPGEAAGTALDLGCGAGDTALELAAAGWTVTGVDLSEKAVALARAAAEARGLGGKAFFVAGDAAEW 417
            FWE  Y +S        N  L  A+  LAPG    +ALDLGCG G  AL LAA GW VTGVD+SE AVA AR AA   G+     F+A D AEW
Sbjct:   14 FWESHYGRSERIWSGNVNSTLAAALKDLAPG----SALDLGCGEGGDALWLAARGWQVTGVDISETAVARAREAAAEHGMSESTEFIAVDLAEW 103          
BLAST of mRNA_S-ischiensis_contig102.1760.1 vs. uniprot
Match: A0A4P8HG36_MICLU (Methyltransferase domain-containing protein n=6 Tax=Micrococcus TaxID=1269 RepID=A0A4P8HG36_MICLU)

HSP 1 Score: 70.5 bits (171), Expect = 7.090e-12
Identity = 48/102 (47.06%), Postives = 56/102 (54.90%), Query Frame = 1
Query:  124 EEQRAFWEGAYKSNPDSVRVDNRLLRQAISSLAPGEAAGTALDLGCGAGDTALELAAAGWTVTGVDLSEKAVALARAAAEARGLGGKAFFVAGD----AAEW 417
            E+ RAFWEG Y          N      ++ L  G   G ALDLGCG G   L LA AGW VTG+DLSE AVA AR AA  RG+  +  F+A D    AA+W
Sbjct:   34 EDPRAFWEGRYGGERVWSGKVNATTAALVAGL--GVTPGRALDLGCGEGGDVLHLAEAGWDVTGIDLSEAAVARARDAARERGVTQRTRFLAADLSDPAADW 133          
BLAST of mRNA_S-ischiensis_contig102.1760.1 vs. uniprot
Match: UPI001671EE49 (class I SAM-dependent methyltransferase n=1 Tax=Zhihengliuella salsuginis TaxID=578222 RepID=UPI001671EE49)

HSP 1 Score: 67.0 bits (162), Expect = 1.060e-10
Identity = 43/95 (45.26%), Postives = 52/95 (54.74%), Query Frame = 1
Query:  139 FWEGAYKS--NPDSVRVDNRLLRQAISSLAPGEAAGTALDLGCGAGDTALELAAAGWTVTGVDLSEKAVALARAAAEARGLGGKAFFVAGDAAEW 417
            FWE  ++S     S    N  +      LAPG+A    LD GCG G  AL LAAAGW VTGVDLSE+A+A AR  A A G   +  ++A D   W
Sbjct:   20 FWEEHWESPERGGSTAPPNPYVTDETRDLAPGQA----LDAGCGIGTEALALAAAGWEVTGVDLSERAIATARERARAAGAAKRTRWIAADLTTW 110          
BLAST of mRNA_S-ischiensis_contig102.1760.1 vs. uniprot
Match: A0A3Q9G5V2_9ACTO (Class I SAM-dependent methyltransferase n=1 Tax=Flaviflexus ciconiae TaxID=2496867 RepID=A0A3Q9G5V2_9ACTO)

HSP 1 Score: 66.2 bits (160), Expect = 1.700e-10
Identity = 42/94 (44.68%), Postives = 56/94 (59.57%), Query Frame = 1
Query:  139 FWEGAY-KSNPDSVRVDNRLLRQAISSLAPGEAAGTALDLGCGAGDTALELAAAGWTVTGVDLSEKAVALARAAAEARGLG-GKAFFVAGDAAE 414
            +W+  Y ++ P      N++L    S L PG +    LDLGCG G   + LA  GWT  G+D+SEKA+A AR+AA+  GLG  +A FVAGD  E
Sbjct:   18 YWDRRYGEAEPIWTGKVNKVLADVASGLEPGRS----LDLGCGEGGDVIWLAKNGWTALGIDISEKAIARARSAAQTEGLGEDRARFVAGDLTE 107          
BLAST of mRNA_S-ischiensis_contig102.1760.1 vs. uniprot
Match: UPI000AF675EC (methyltransferase domain-containing protein n=2 Tax=Leucobacter TaxID=55968 RepID=UPI000AF675EC)

HSP 1 Score: 66.2 bits (160), Expect = 2.570e-10
Identity = 44/94 (46.81%), Postives = 53/94 (56.38%), Query Frame = 1
Query:  136 AFWEGAYKSNPDSVRVDNRLLRQAISSLAPGEAAGTALDLGCGAGDTALELAAAGWTVTGVDLSEKAVALARAAAEARGLGGKAFFVAGDAAEW 417
            AFW+  Y  +    R+ +  +  A+  LA     G +LDLGCG G   L LA  GW  TG+DLSE AVA ARAAA  RGL   A F+A D  EW
Sbjct:   39 AFWQQRYGGDD---RIWSGHVNHALGELAADWRPGRSLDLGCGEGGDVLWLAEHGWNATGIDLSEYAVARARAAARERGLDA-ARFIAADLGEW 128          
BLAST of mRNA_S-ischiensis_contig102.1760.1 vs. uniprot
Match: UPI001FD3B234 (FAD-dependent oxidoreductase n=2 Tax=unclassified Leucobacter TaxID=2621730 RepID=UPI001FD3B234)

HSP 1 Score: 65.9 bits (159), Expect = 8.620e-10
Identity = 48/102 (47.06%), Postives = 59/102 (57.84%), Query Frame = 1
Query:  124 EEQRAFWEGAY-KSNPDSVRVDNRLLRQAISSLAPGEAAGTALDLGCGAGDTALELAAAGWTVTGVDLSEKAVALARAAAEARGLGGKAFFVAGDAAEWPQS 426
            E+ R FWE  Y  + P      N  L + +++    +AAG ALDLGCG G  A+ LA  GW  TG+DLSE AVA ARAAA ARG  G A F A D   W ++
Sbjct:  383 EDPRDFWERRYGDAGPVWSGRVNTALAEVVAAW--DDAAGRALDLGCGEGGDAIWLAERGWRATGLDLSETAVARARAAAAARGADG-AEFRATDLGAWAEA 481          
BLAST of mRNA_S-ischiensis_contig102.1760.1 vs. uniprot
Match: A0A7V9J9G8_9ACTN (Class I SAM-dependent methyltransferase n=1 Tax=Nocardioidaceae bacterium TaxID=1871072 RepID=A0A7V9J9G8_9ACTN)

HSP 1 Score: 63.5 bits (153), Expect = 1.850e-9
Identity = 42/91 (46.15%), Postives = 53/91 (58.24%), Query Frame = 1
Query:  136 AFWEGAYKSNPDSVRVDNRLLRQAISSLAPGEAAGTALDLGCGAGDTALELAAAGWTVTGVDLSEKAVALARAAAEARGLGGKAF-FVAGD 405
            A WEGA ++    +  D R   + +     G +A  A+DLGCG G  A+ELA AG+ VTGVD SE A+  AR AAE  GLG     F+AGD
Sbjct:   17 APWEGADRAELRRLVADGRCAPETLRRR--GASAARAIDLGCGTGGVAIELAEAGFDVTGVDFSEVALRKARTAAERHGLGADRIRFIAGD 105          
BLAST of mRNA_S-ischiensis_contig102.1760.1 vs. uniprot
Match: UPI0015631479 (class I SAM-dependent methyltransferase n=1 Tax=unclassified Rathayibacter TaxID=2609250 RepID=UPI0015631479)

HSP 1 Score: 62.8 bits (151), Expect = 5.530e-9
Identity = 50/105 (47.62%), Postives = 56/105 (53.33%), Query Frame = 1
Query:  133 RAFWEGAYKSNPDSVRV----DNRLLRQAISSLAPGEAAGTALDLGCGAGDTALELAAAGWTVTGVDLSEKAVALARAAAEARGLGGKAFFV--AGDAAEWPQSG 429
            R  WE  Y    D+ RV     N  L   +  L PG A    LDLGCG G   L LAA GW+VTG+DLSE A+  ARA A+ARGL   A  V  A   AEWP  G
Sbjct:   55 REHWEARYS---DADRVWSGRPNATLVDVVRDLTPGRA----LDLGCGEGGDVLWLAAQGWSVTGLDLSETALGRARAEADARGL---AIDVRQADLGAEWPVEG 149          
BLAST of mRNA_S-ischiensis_contig102.1760.1 vs. uniprot
Match: A0A0Q5AVJ7_9MICO (Methyltransf_25 domain-containing protein n=6 Tax=Rathayibacter TaxID=33886 RepID=A0A0Q5AVJ7_9MICO)

HSP 1 Score: 62.0 bits (149), Expect = 5.750e-9
Identity = 48/103 (46.60%), Postives = 55/103 (53.40%), Query Frame = 1
Query:  133 RAFWEGAYKSNPDSVRV----DNRLLRQAISSLAPGEAAGTALDLGCGAGDTALELAAAGWTVTGVDLSEKAVALARAAAEARGLGGKAFFVAGDAAEWPQSG 429
            R  WE  Y    DS R+     N  L   +  L PG A    LDLGCG G  AL LA  GW+VTG+DLSE A+A AR  AE RGL    F  A   A+WP +G
Sbjct:    5 RDHWEARYA---DSDRIWSGRPNAALVDLVRDLPPGRA----LDLGCGEGGDALWLAEQGWSVTGLDLSETALARARQEAERRGLAID-FRQADLGADWPTAG 99          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig102.1760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1R1LV75_9MICC5.850e-1346.79Methyltransf_25 domain-containing protein n=1 Tax=... [more]
A0A5B7WX69_9MICC2.340e-1251.06Class I SAM-dependent methyltransferase n=2 Tax=Gl... [more]
A0A4P8HG36_MICLU7.090e-1247.06Methyltransferase domain-containing protein n=6 Ta... [more]
UPI001671EE491.060e-1045.26class I SAM-dependent methyltransferase n=1 Tax=Zh... [more]
A0A3Q9G5V2_9ACTO1.700e-1044.68Class I SAM-dependent methyltransferase n=1 Tax=Fl... [more]
UPI000AF675EC2.570e-1046.81methyltransferase domain-containing protein n=2 Ta... [more]
UPI001FD3B2348.620e-1047.06FAD-dependent oxidoreductase n=2 Tax=unclassified ... [more]
A0A7V9J9G8_9ACTN1.850e-946.15Class I SAM-dependent methyltransferase n=1 Tax=No... [more]
UPI00156314795.530e-947.62class I SAM-dependent methyltransferase n=1 Tax=un... [more]
A0A0Q5AVJ7_9MICO5.750e-946.60Methyltransf_25 domain-containing protein n=6 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig102contigS-ischiensis_contig102:221543..222884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score65.5
Seed ortholog evalue2.4e-08
Seed eggNOG ortholog1122175.ATXU01000003_gene604
KEGG rclassRC00013,RC02518,RC02873
KEGG koko:K00384
KEGG ReactionR02016,R03596,R09372
KEGG Pathwayko00450,map00450
EggNOG free text desc.Pyridine nucleotide-disulphide oxidoreductase
EggNOG OGs2GIXN@201174,4FMYR@85023,COG0492@1,COG0492@2,COG0500@1,COG0500@2
EC1.8.1.9
COG Functional cat.O
Best tax levelMicrobacteriaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons3
Model size432
Cds size429
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig102.1760.1prot_S-ischiensis_contig102.1760.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig102 221543..222882 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815555.099737-CDS-S-ischiensis_contig102:221542..2215681622815555.099737-CDS-S-ischiensis_contig102:221542..221568Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 221543..221568 +
1695739766.7462525-CDS-S-ischiensis_contig102:221542..2215681695739766.7462525-CDS-S-ischiensis_contig102:221542..221568Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 221543..221568 +
1622815555.116351-CDS-S-ischiensis_contig102:222217..2223521622815555.116351-CDS-S-ischiensis_contig102:222217..222352Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 222218..222352 +
1695739766.7568884-CDS-S-ischiensis_contig102:222217..2223521695739766.7568884-CDS-S-ischiensis_contig102:222217..222352Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 222218..222352 +
1622815555.1263444-CDS-S-ischiensis_contig102:222614..2228821622815555.1263444-CDS-S-ischiensis_contig102:222614..222882Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 222615..222882 +
1695739766.7677393-CDS-S-ischiensis_contig102:222614..2228821695739766.7677393-CDS-S-ischiensis_contig102:222614..222882Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 222615..222882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig102.1760.1

>prot_S-ischiensis_contig102.1760.1 ID=prot_S-ischiensis_contig102.1760.1|Name=mRNA_S-ischiensis_contig102.1760.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=143bp
GKPASAPRWPVPATYETTSTTRRETTTRGTAKATMSSPAAREEQRAFWEG
AYKSNPDSVRVDNRLLRQAISSLAPGEAAGTALDLGCGAGDTALELAAAG
WTVTGVDLSEKAVALARAAAEARGLGGKAFFVAGDAAEWPQSG
back to top

mRNA from alignment at S-ischiensis_contig102:221543..222884+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig102.1760.1 ID=mRNA_S-ischiensis_contig102.1760.1|Name=mRNA_S-ischiensis_contig102.1760.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1342bp|location=Sequence derived from alignment at S-ischiensis_contig102:221543..222884+ (Schizocladia ischiensis KU_0333)
GGCAAGCCGGCTTCAGCTCCACGCTGGTGAGGTTGTTTCTGGTGTTTACG ATGAGGCGCGCCGCCCATAAAACCCTTGTGCGCGAATGCTGACACATTCC TTGTATGCAGCACGCGAGGGGGGCGGACGCATTGCTTGAAGTTGGCAAGT GAACCCCAAGTTCAAGCAGAGCGGAGCCGCGGAGATGCGCCCCACCAGCG GATACCCTCCCCGCAACCACCCCCGCCCCCACGAATGACTTGCAAAGGCC ACCCTGTCGTATTAGGTCGCCATCATCCAGTGTAAGCCCGTGCACAGCAC ACGCTTGCTCACTGGGTAGAGCCCCGCCCCCCCCGACGCCCAGGGGCAAC GTCGCTGCTGGGCTCGGCTAGCCTGTGCCCCAGTAGCAACAATGCACTCG AAAGCGCTTTAAAATGTGCTTCCACGGTCTTGGTCCGCCACCGTGGCCGC CACCATGTCCGCAGCGCTGCGTCCGTGGCCCCCGTCCGTGCCCGTGGCGC CAGTTGACACTTGGAGGTTAATTGCTTGTACAACAATTGTAGGGCCTAAT TAGCCTTCAGTTTAGGTCTAATTGCCCCTATTTACCCCTAATTGAGGGCC TGAAAGGGCACCACTTAGGGGTTAAGTGCCAACCCTGCATGGCGCCCCTG CCGCCGGCTGCCGCCCGACCTTCAGGCCAGTGCCCGCTACCTACGAAACA ACTTCAACAACAAGGAGAGAAACAACAACAAGAGGGACAGCCAAGGCCAC CATGAGCTCGCCTGCTGCCCGGGAGGAGCAGCGGGCCTTCTGGGAGGGCG CCTACAAGAGGTGCAGCGTGTGCACATTGTGTTTTTTTGGTATGTACTTC GTCCATACTCTGAGTACTTCTTCTACAGGACAGAGTACTGTTGTGTACCG TACACGAGTACGAGTACACAACGGCCATACTTGGAACCCGAAACGCTGCC AATACTGTAGCAACGGAATGCACCTTTTCGCAAATGCAAACGCCGTGGGT ATACTCGTACATACCCCCCCCCCCCCCCTCTCTATCTCTTGCGCGCCCGC CTCCCCTCCCGCCCGCCCGCAGCAACCCGGACAGCGTCCGCGTCGACAAC CGCCTCCTCCGCCAGGCCATCTCCAGTCTCGCCCCGGGTGAAGCCGCGGG CACGGCCCTGGATCTCGGCTGCGGTGCTGGAGACACCGCCCTCGAGCTCG CGGCGGCCGGGTGGACGGTCACCGGGGTAGACCTCTCGGAGAAGGCCGTG GCGCTCGCGCGGGCGGCGGCGGAGGCGCGCGGGCTGGGTGGGAAGGCGTT CTTTGTGGCCGGGGACGCGGCCGAGTGGCCGCAGAGTGGCGG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig102:221543..222884+

>mRNA_S-ischiensis_contig102.1760.1 ID=mRNA_S-ischiensis_contig102.1760.1|Name=mRNA_S-ischiensis_contig102.1760.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=858bp|location=Sequence derived from alignment at S-ischiensis_contig102:221543..222884+ (Schizocladia ischiensis KU_0333)
GGCAAGCCGGCTTCAGCTCCACGCTGGGCAAGCCGGCTTCAGCTCCACGC
TGGCCAGTGCCCGCTACCTACGAAACAACTTCAACAACAAGGAGAGAAAC
AACAACAAGAGGGACAGCCAAGGCCACCATGAGCTCGCCTGCTGCCCGGG
AGGAGCAGCGGGCCTTCTGGGAGGGCGCCTACAAGAGGCCAGTGCCCGCT
ACCTACGAAACAACTTCAACAACAAGGAGAGAAACAACAACAAGAGGGAC
AGCCAAGGCCACCATGAGCTCGCCTGCTGCCCGGGAGGAGCAGCGGGCCT
TCTGGGAGGGCGCCTACAAGAGCAACCCGGACAGCGTCCGCGTCGACAAC
CGCCTCCTCCGCCAGGCCATCTCCAGTCTCGCCCCGGGTGAAGCCGCGGG
CACGGCCCTGGATCTCGGCTGCGGTGCTGGAGACACCGCCCTCGAGCTCG
CGGCGGCCGGGTGGACGGTCACCGGGGTAGACCTCTCGGAGAAGGCCGTG
GCGCTCGCGCGGGCGGCGGCGGAGGCGCGCGGGCTGGGTGGGAAGGCGTT
CTTTGTGGCCGGGGACGCGGCCGAGTGGCCGCAGAGTGGCCAACCCGGAC
AGCGTCCGCGTCGACAACCGCCTCCTCCGCCAGGCCATCTCCAGTCTCGC
CCCGGGTGAAGCCGCGGGCACGGCCCTGGATCTCGGCTGCGGTGCTGGAG
ACACCGCCCTCGAGCTCGCGGCGGCCGGGTGGACGGTCACCGGGGTAGAC
CTCTCGGAGAAGGCCGTGGCGCTCGCGCGGGCGGCGGCGGAGGCGCGCGG
GCTGGGTGGGAAGGCGTTCTTTGTGGCCGGGGACGCGGCCGAGTGGCCGC
AGAGTGGC
back to top