mRNA_S-ischiensis_contig102.1751.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig102.1751.1
Unique NamemRNA_S-ischiensis_contig102.1751.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig102.1751.1 vs. uniprot
Match: D7FQ81_ECTSI (DUF4206 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ81_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 3.690e-17
Identity = 53/128 (41.41%), Postives = 69/128 (53.91%), Query Frame = 1 
Query:   79 EYLKEFQAFAGRVSSAAEEKLASVDGGTYNEFLRFYSRTSKQAARLRPTSEPDAPPKDKHWRQFQVLLAGLRDAGASPAVASAPEGSVLCAGPD-------LENLCLSLEKCLFFGGVGHSPDFWAAL 441
            ++ KEFQAFAGR S+ A ++L  VDGGTY  F R Y    +   +   T+       D+  RQ   LL  L+ A  SP + + P+G+VL  G         L  LC++LEKCLFFG  G  PDFW  L
Sbjct:   11 QFSKEFQAFAGRFSAVATDRLDRVDGGTY--FSRLYQVREQVREQTNNTT-------DEEQRQIGTLLEELQLAMESPLLLAPPQGTVLHTGMAEGETGLALARLCVALEKCLFFGAEGPMPDFWRVL 129
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BLAST of mRNA_S-ischiensis_contig102.1751.1 vs. uniprot
Match: A0A6H5KEI0_9PHAE (DUF4206 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEI0_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 4.380e-16
Identity = 52/125 (41.60%), Postives = 65/125 (52.00%), Query Frame = 1 
Query:   88 KEFQAFAGRVSSAAEEKLASVDGGTYNEFLRFYSRTSKQAARLRPTSEPDAPPKDKHWRQFQVLLAGLRDAGASPAVASAPEGSVLCAGPD-------LENLCLSLEKCLFFGGVGHSPDFWAAL 441
            KEFQAFAGR S+ A ++L  VDGGTY  F R Y  ++                 D+  RQ   LL  L+ A  SP + + P+G+VL  G         L  LC++LEKCLFFG  G  PDFW  L
Sbjct:   14 KEFQAFAGRFSAVATDRLDRVDGGTY--FSRLYQTSNTT---------------DEEQRQIVTLLEELQLAMESPLLLAPPQGTVLHTGMAEGETGLALARLCVALEKCLFFGAEGPMPDFWRVL 121
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig102.1751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQ81_ECTSI3.690e-1741.41DUF4206 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KEI0_9PHAE4.380e-1641.60DUF4206 domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig102contigS-ischiensis_contig102:181479..182311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.4
Seed ortholog evalue5.5e-15
Seed eggNOG ortholog2880.D7FQ81
Preferred namePLEKHM2
KEGG koko:K15348
KEGG Pathwayko05132,map05132
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0006996,GO:0007030,GO:0008092,GO:0008150,GO:0009987,GO:0010008,GO:0010256,GO:0012505,GO:0016020,GO:0016043,GO:0019894,GO:0031090,GO:0031410,GO:0031982,GO:0032418,GO:0032879,GO:0032880,GO:0043226,GO:0043227,GO:0043229,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051179,GO:0051640,GO:0051641,GO:0065007,GO:0071840,GO:0097708,GO:0098588,GO:0098805,GO:1903525,GO:1903527,GO:1903729
EggNOG free text desc.positive regulation of ruffle assembly
EggNOG OGsKOG1829@1,KOG1829@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size481
Cds size405
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig102.1751.1prot_S-ischiensis_contig102.1751.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig102 181554..182311 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815554.6005788-UTR-S-ischiensis_contig102:181478..1815531622815554.6005788-UTR-S-ischiensis_contig102:181478..181553Schizocladia ischiensis KU_0333UTRS-ischiensis_contig102 181479..181553 +
1695739766.409065-UTR-S-ischiensis_contig102:181478..1815531695739766.409065-UTR-S-ischiensis_contig102:181478..181553Schizocladia ischiensis KU_0333UTRS-ischiensis_contig102 181479..181553 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815554.6121528-CDS-S-ischiensis_contig102:181553..1817091622815554.6121528-CDS-S-ischiensis_contig102:181553..181709Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 181554..181709 +
1695739766.4223125-CDS-S-ischiensis_contig102:181553..1817091695739766.4223125-CDS-S-ischiensis_contig102:181553..181709Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 181554..181709 +
1622815554.6230352-CDS-S-ischiensis_contig102:182062..1823111622815554.6230352-CDS-S-ischiensis_contig102:182062..182311Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 182063..182311 +
1695739766.4316854-CDS-S-ischiensis_contig102:182062..1823111695739766.4316854-CDS-S-ischiensis_contig102:182062..182311Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 182063..182311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig102.1751.1

>prot_S-ischiensis_contig102.1751.1 ID=prot_S-ischiensis_contig102.1751.1|Name=mRNA_S-ischiensis_contig102.1751.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=135bp
MEYLKEFQAFAGRVSSAAEEKLASVDGGTYNEFLRFYSRTSKQAARLRPT
SEPDAPPKDKHWRQFQVLLAGLRDAGASPAVASAPEGSVLCAGPDLENLC
LSLEKCLFFGGVGHSPDFWAALDPEGRFSPRTPPF
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mRNA from alignment at S-ischiensis_contig102:181479..182311+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig102.1751.1 ID=mRNA_S-ischiensis_contig102.1751.1|Name=mRNA_S-ischiensis_contig102.1751.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=833bp|location=Sequence derived from alignment at S-ischiensis_contig102:181479..182311+ (Schizocladia ischiensis KU_0333)
ATTTGCTCGTTGCCATCCTCGATGAGCGCGCTCCAGCTGTCATGTCCTTG
AGGATGCACTCGGTTGAGATAGGCAATGGAGTATCTGAAAGAGTTCCAGG
CCTTTGCGGGAAGGGTATCTTCCGCGGCCGAGGAGAAGCTGGCCAGTGTT
GATGGAGGCACCTACAACGAGTTCTTGCGCTTCTACTCCAGGACAAGCAA
ACAAGCGGCCCGACTTCGGCCCACTAGCGAGGTGATGCGTACTTTTAGCA
CCAAGTACCGCAGTTTCTCTCCCCTGCTAGACTTGCTACCCTATTCAAGA
TTGAAAGTGCTACCACAGACAACAGACAAGGAGATCGTTGACCTTGGTCT
CACACAGACATTCTCCTAAGATAGGACCTCCCTCGTTTTGCCACATAGAC
TAAGTATTATCAGGACAACACAAGACAAGGCGCAGACCACGTCACTAAAG
ACCTCAGCAGTGTAAGTAGGATCTCCCTCGTTTTTGCCACATCTCTATGT
GCACCACGTCGCGTTCTGACAGTTCCCCTCTCTCTTTCCCCCGCCCCAAC
TCCATGGCCACATGTAACGCCCGCTGGTTAATAGCCCGATGCCCCGCCCA
AGGACAAGCACTGGCGGCAGTTCCAGGTCCTGCTGGCCGGCCTACGCGAC
GCGGGCGCCTCCCCGGCCGTCGCCTCCGCCCCGGAGGGGAGCGTGCTGTG
CGCCGGCCCCGACCTCGAGAACCTCTGCCTCTCCCTGGAGAAGTGCCTCT
TCTTTGGAGGCGTTGGTCACAGCCCCGACTTCTGGGCGGCGCTGGACCCG
GAGGGCCGGTTCTCCCCGCGCACGCCTCCCTTT
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Coding sequence (CDS) from alignment at S-ischiensis_contig102:181479..182311+

>mRNA_S-ischiensis_contig102.1751.1 ID=mRNA_S-ischiensis_contig102.1751.1|Name=mRNA_S-ischiensis_contig102.1751.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=810bp|location=Sequence derived from alignment at S-ischiensis_contig102:181479..182311+ (Schizocladia ischiensis KU_0333)
ATGGAGTATCTGAAAGAGTTCCAGGCCTTTGCGGGAAGGGTATCTTCCGC
GGCCGAGGAGAAGCTGGCCAGTGTTGATGGAGGCACCTACAACGAGTTCT
TGCGCTTCTACTCCAGGACAAGCAAACAAGCGGCCCGACTTCGGCCCACT
AGCGAGATGGAGTATCTGAAAGAGTTCCAGGCCTTTGCGGGAAGGGTATC
TTCCGCGGCCGAGGAGAAGCTGGCCAGTGTTGATGGAGGCACCTACAACG
AGTTCTTGCGCTTCTACTCCAGGACAAGCAAACAAGCGGCCCGACTTCGG
CCCACTAGCGAGCCCGATGCCCCGCCCAAGGACAAGCACTGGCGGCAGTT
CCAGGTCCTGCTGGCCGGCCTACGCGACGCGGGCGCCTCCCCGGCCGTCG
CCTCCGCCCCGGAGGGGAGCGTGCTGTGCGCCGGCCCCGACCTCGAGAAC
CTCTGCCTCTCCCTGGAGAAGTGCCTCTTCTTTGGAGGCGTTGGTCACAG
CCCCGACTTCTGGGCGGCGCTGGACCCGGAGGGCCGGTTCTCCCCGCGCA
CGCCTCCCTTTCCCGATGCCCCGCCCAAGGACAAGCACTGGCGGCAGTTC
CAGGTCCTGCTGGCCGGCCTACGCGACGCGGGCGCCTCCCCGGCCGTCGC
CTCCGCCCCGGAGGGGAGCGTGCTGTGCGCCGGCCCCGACCTCGAGAACC
TCTGCCTCTCCCTGGAGAAGTGCCTCTTCTTTGGAGGCGTTGGTCACAGC
CCCGACTTCTGGGCGGCGCTGGACCCGGAGGGCCGGTTCTCCCCGCGCAC
GCCTCCCTTT
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