mRNA_S-ischiensis_contig102.1750.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig102.1750.1
Unique NamemRNA_S-ischiensis_contig102.1750.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig102.1750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig102contigS-ischiensis_contig102:170075..170559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size486
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815552.4367168-CDS-S-ischiensis_contig102:170074..1704041622815552.4367168-CDS-S-ischiensis_contig102:170074..170404Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 170075..170404 +
1695739765.153173-CDS-S-ischiensis_contig102:170074..1704041695739765.153173-CDS-S-ischiensis_contig102:170074..170404Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 170075..170404 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815552.4480023-UTR-S-ischiensis_contig102:170404..1705591622815552.4480023-UTR-S-ischiensis_contig102:170404..170559Schizocladia ischiensis KU_0333UTRS-ischiensis_contig102 170405..170559 +
1695739765.1695778-UTR-S-ischiensis_contig102:170404..1705591695739765.1695778-UTR-S-ischiensis_contig102:170404..170559Schizocladia ischiensis KU_0333UTRS-ischiensis_contig102 170405..170559 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig102.1750.1prot_S-ischiensis_contig102.1750.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig102 170075..170404 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig102.1750.1

>prot_S-ischiensis_contig102.1750.1 ID=prot_S-ischiensis_contig102.1750.1|Name=mRNA_S-ischiensis_contig102.1750.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=110bp
APQWQAVPGACLPHRREDAQGPGPAPGHCRLCIRDSGGGRGSPPGPGRGH
GGRPPPPAGCVGRGGAGGGGGWGAVRHRRRRTASILVCEGAAPGHRRLCV
RGSGGQGLH*
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mRNA from alignment at S-ischiensis_contig102:170075..170559+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig102.1750.1 ID=mRNA_S-ischiensis_contig102.1750.1|Name=mRNA_S-ischiensis_contig102.1750.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=485bp|location=Sequence derived from alignment at S-ischiensis_contig102:170075..170559+ (Schizocladia ischiensis KU_0333)
GCGCCTCAATGGCAAGCAGTCCCTGGAGCTTGCCTTCCTCATCGCCGAGA
AGATGCGCAAGGACCAGGGCCTGCCCCCGGTCATTGCCGACTTTGCATAA
GGGACTCTGGCGGTGGCAGGGGCTCTCCCCCGGGGCCCGGCCGCGGCCAT
GGAGGGCGCCCCCCGCCCCCCGCCGGATGTGTGGGAAGAGGGGGGGCCGG
AGGAGGAGGAGGATGGGGGGCAGTTCGTCATCGTCGGCGACGGACGGCGA
GCATACTTGTGTGTGAAGGGGCTGCCCCCGGTCATCGCCGCCTTTGCGTA
AGGGGCTCTGGTGGCCAGGGTTTGCACTGAGGGGTTAATTAGGGCCCAAT
GAGCCTTCATGTGAGGGCTAGTTGCCCCTAATTGCCTCTGATTAAGGGCC
TAAAATGGCACCTCTTAGGGGTTAAGTGCCAACCCTGCTGGCGGCGGCAG
GGGTTCCCCCGGGGCCAGGCCGTGGCCATGGGGTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig102:170075..170559+

>mRNA_S-ischiensis_contig102.1750.1 ID=mRNA_S-ischiensis_contig102.1750.1|Name=mRNA_S-ischiensis_contig102.1750.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=660bp|location=Sequence derived from alignment at S-ischiensis_contig102:170075..170559+ (Schizocladia ischiensis KU_0333)
GCGCCTCAATGGCAAGCAGTCCCTGGAGCTTGCCTTCCTCATCGCCGAGA
AGATGCGCAAGGACCAGGGCCTGCCCCCGGTCATTGCCGACTTTGCATAA
GGGACTCTGGCGGTGGCAGGGGCTCTCCCCCGGGGCCCGGCCGCGGCCAT
GGAGGGCGCCCCCCGCCCCCCGCCGGATGTGTGGGAAGAGGGGGGGCCGG
AGGAGGAGGAGGATGGGGGGCAGTTCGTCATCGTCGGCGACGGACGGCGA
GCATACTTGTGTGTGAAGGGGCTGCCCCCGGTCATCGCCGCCTTTGCGTA
AGGGGCTCTGGTGGCCAGGGTTTGCACTGAGCGCCTCAATGGCAAGCAGT
CCCTGGAGCTTGCCTTCCTCATCGCCGAGAAGATGCGCAAGGACCAGGGC
CTGCCCCCGGTCATTGCCGACTTTGCATAAGGGACTCTGGCGGTGGCAGG
GGCTCTCCCCCGGGGCCCGGCCGCGGCCATGGAGGGCGCCCCCCGCCCCC
CGCCGGATGTGTGGGAAGAGGGGGGGCCGGAGGAGGAGGAGGATGGGGGG
CAGTTCGTCATCGTCGGCGACGGACGGCGAGCATACTTGTGTGTGAAGGG
GCTGCCCCCGGTCATCGCCGCCTTTGCGTAAGGGGCTCTGGTGGCCAGGG
TTTGCACTGA
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