mRNA_S-ischiensis_contig102.1748.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig102.1748.1
Unique NamemRNA_S-ischiensis_contig102.1748.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig102.1748.1 vs. uniprot
Match: D7FQB3_ECTSI (Glucosidase 2 subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB3_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 1.240e-38
Identity = 84/171 (49.12%), Postives = 105/171 (61.40%), Query Frame = 1 
Query:   46 ALTRYQQGGLPALSRSLDYRRYPALRSVRMWLDSYLSYDSPAWWGGRPLLVMWDAPLLLYHSLFPEMDENYQRPEAALLREGIAAAQE-------------ARARSRREWDKAREEANRMLALDLGPGRAYAALADKCLEMTEGEYKYSVCLFREAKQGSSSLGRWDGWGP 519
            AL  Y+  GLP +S  LDYRRYP LRSV +  D +L  +      G+ LLVMWDAP+ L+   FP  D+ ++RPEAA+LREGIA A+               R + RRE      EA R+  LDLG G  +AALA+KCL++ EG Y YS+C F+EAKQ   SLGRW GWGP
Sbjct:  497 ALEGYRDRGLPGISPHLDYRRYPTLRSVVLHWDEFLHGN------GKSLLVMWDAPVALWDFCFPYRDDKHERPEAAMLREGIARARAILQEKKPDTAGRGGRGKRRRE----ESEAKRLSGLDLGEGSRFAALAEKCLDLEEGGYLYSLCPFKEAKQDKHSLGRWRGWGP 657
[Close]
BLAST of mRNA_S-ischiensis_contig102.1748.1 vs. uniprot
Match: A0A6H5JF29_9PHAE (MRH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF29_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 1.050e-36
Identity = 82/168 (48.81%), Postives = 102/168 (60.71%), Query Frame = 1 
Query:   46 ALTRYQQGGLPALSRSLDYRRYPALRSVRMWLDSYLSYDSPAWWGGRPLLVMWDAPLLLYHSLFPEMDENYQRPEAALLREGIAAAQEARARSRREWDKA-----------REEANRMLALDLGPGRAYAALADKCLEMTEGEYKYSVCLFREAKQGSSSLGRWDGWG 516
            AL  Y+  GLP +S  LDYRRYP LRSV +  D +L  +      G+ LLVMWDAP+ L+   FP  D+ Y+RPEAA+LREGIA A+       R+ D A             EA R+  LDLG G  +AALA KCL++ EG Y YS+C F++AKQ   SLGRW GWG
Sbjct:  251 ALEDYRDRGLPGISPHLDYRRYPTLRSVVLRWDEFLHGN------GKFLLVMWDAPVALWDFCFPYRDDEYERPEAAMLREGIARARAIL--QERKPDTAGGXXXXXXXXEESEAKRLSGLDLGEGSRFAALAGKCLDLEEGGYLYSLCPFKDAKQDKHSLGRWRGWG 410
[Close]
BLAST of mRNA_S-ischiensis_contig102.1748.1 vs. uniprot
Match: A0A3M6VER9_9STRA (MRH domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VER9_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.200e-15
Identity = 54/160 (33.75%), Postives = 80/160 (50.00%), Query Frame = 1 
Query:   76 PALSRSLDYRRYPALRSVRMWLDSYLSYDSP--AWWGGRPLLVMWDAPLLLYHSLFPEMDENYQRPEAALLREGIAAAQEARARSRREWDKAREEANRMLALDLGPGRAYAALADKCLE------------MTEGEYKYSVCLFREAKQGSSSLGRWDGW 513
            P LSRS+ +RR          L   + ++S   A WG +   V+WDAP+ +YH LFP +D   + P A  LR  +   +   A+  ++ ++ RE    M  +D GP RAY AL   C+E            + + +Y+Y  C F E KQ  + LG+WDGW
Sbjct:  104 PPLSRSVWFRR----------LGGGIVFNSYRLATWGAQ---VVWDAPVYVYHYLFPTLDNEVKLPTAESLRTVLHEIESDIAKLEKDGNEKRE----MAEMDYGPDRAYFALKKNCIEKRVEDAARSKRGLCKQKYEYKFCAFGEVKQDQTKLGKWDGW 246
[Close]
BLAST of mRNA_S-ischiensis_contig102.1748.1 vs. uniprot
Match: A0A425CFK2_9STRA (Glucosidase 2 subunit beta n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A425CFK2_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.530e-15
Identity = 55/160 (34.38%), Postives = 78/160 (48.75%), Query Frame = 1 
Query:   76 PALSRSLDYRRYPALRSVRMWLDSYLSYDSP--AWWGGRPLLVMWDAPLLLYHSLFPEMDENYQRPEAALLREGIAAAQEARARSRREWDKAREEANRMLALDLGPGRAYAALADKCLE------------MTEGEYKYSVCLFREAKQGSSSLGRWDGW 513
            P LSRS+ +RR          L   + ++S   A WG +   V+WDAP+ +YH LFP +D   + P A  LR  +   +   A+     +K R E   M  +D GP RAY AL   C+E            + + +Y+Y  C F E KQ  + LG+WDGW
Sbjct:  358 PPLSRSVWFRR----------LGGGIVFNSYRLATWGAQ---VVWDAPVYVYHYLFPTLDNEVKLPTAESLRTVLHEIESDIAK----LEKDRNEKREMAEMDYGPDRAYFALKKNCIEKRVEDAARSKRGLCKQKYQYKFCAFGEVKQDQTKLGKWDGW 500
[Close]
BLAST of mRNA_S-ischiensis_contig102.1748.1 vs. uniprot
Match: A0A7S2RAT4_9STRA (Glucosidase 2 subunit beta n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RAT4_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.970e-6
Identity = 35/109 (32.11%), Postives = 52/109 (47.71%), Query Frame = 1 
Query:  196 VMWDAPLLLYHSLF--PEMDENYQRPEAA-LLREGIAAAQEARARSRREWDKAREEANRMLALDLGPGRAYAALADKCLEMTEGEYKYSVCLFREAKQGSSSLGRWDGW 513
            + WDA   LY  LF  PE D   + P     LR+G +   +       + D       R L +D GP R Y  L D+C E     Y + +C ++EA+QG++S+G +  W
Sbjct:  480 LFWDASPTLYFYLFGTPEADVLNKLPRHLNFLRQGESKVND----MLHQVDSGISSLERRLKMDYGPSREYLILVDECFEKEVHGYMWKLCHYKEAQQGTTSIGTFSAW 584
[Close]
BLAST of mRNA_S-ischiensis_contig102.1748.1 vs. uniprot
Match: A0A812PYB9_SYMPI (PSL4 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812PYB9_SYMPI)

HSP 1 Score: 55.5 bits (132), Expect = 4.860e-6
Identity = 21/39 (53.85%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:  397 YAALADKCLEMTEGEYKYSVCLFREAKQGSSSLGRWDGW 513
            Y+ L  +C+E + GEYKY +C F  AKQ S+S+GRW GW
Sbjct:  115 YSGLDGRCIEKSIGEYKYKICFFDNAKQDSTSVGRWQGW 153
[Close]
BLAST of mRNA_S-ischiensis_contig102.1748.1 vs. uniprot
Match: A0A137NYP4_CONC2 (Glucosidase 2 subunit beta (Fragment) n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137NYP4_CONC2)

HSP 1 Score: 56.6 bits (135), Expect = 4.890e-6
Identity = 28/61 (45.90%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:  349 EEANRMLALDLGPGRAYAALADKCLEMTEGEYKYSVCLFREAKQGSS------SLGRWDGW 513
            ++ N  L  D+GP   Y+AL+DKC E+  GEY YSVC+F EA Q S+      SLG +  W
Sbjct:  335 DDLNTKLNRDMGPDGEYSALSDKCFELDNGEYVYSVCMFGEANQKSNKNHDSVSLGHFSEW 395
[Close]
BLAST of mRNA_S-ischiensis_contig102.1748.1 vs. uniprot
Match: A0A812XV59_9DINO (Glucosidase 2 subunit beta n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812XV59_9DINO)

HSP 1 Score: 56.2 bits (134), Expect = 6.750e-6
Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:  397 YAALADKCLEMTEGEYKYSVCLFREAKQGSSSLGRWDGW 513
            Y+ L  +C+E + GEYKY +C F +AKQ S+S+GRW GW
Sbjct:  386 YSGLDGRCIEKSIGEYKYKICFFDDAKQDSTSIGRWKGW 424
[Close]
BLAST of mRNA_S-ischiensis_contig102.1748.1 vs. uniprot
Match: A0A812NR70_9DINO (PSL4 protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812NR70_9DINO)

HSP 1 Score: 55.8 bits (133), Expect = 1.010e-5
Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:  397 YAALADKCLEMTEGEYKYSVCLFREAKQGSSSLGRWDGW 513
            Y+ L  +C+E + GEYKY +C F +AKQ S+S+GRW GW
Sbjct:  655 YSGLDGRCIEKSIGEYKYKICFFDDAKQDSTSVGRWKGW 693
[Close]
BLAST of mRNA_S-ischiensis_contig102.1748.1 vs. uniprot
Match: A0A1Q9CHN1_SYMMI (Uncharacterized protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9CHN1_SYMMI)

HSP 1 Score: 55.8 bits (133), Expect = 1.160e-5
Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:  397 YAALADKCLEMTEGEYKYSVCLFREAKQGSSSLGRWDGW 513
            Y+ L  +C+E + GEYKY +C F +AKQ S+S+GRW GW
Sbjct:  818 YSGLDGRCIEKSIGEYKYKICFFDDAKQDSTSVGRWKGW 856
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig102.1748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7FQB3_ECTSI1.240e-3849.12Glucosidase 2 subunit beta n=1 Tax=Ectocarpus sili... [more]
A0A6H5JF29_9PHAE1.050e-3648.81MRH domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A3M6VER9_9STRA1.200e-1533.75MRH domain-containing protein n=1 Tax=Peronospora ... [more]
A0A425CFK2_9STRA1.530e-1534.38Glucosidase 2 subunit beta n=1 Tax=Peronospora eff... [more]
A0A7S2RAT4_9STRA3.970e-632.11Glucosidase 2 subunit beta n=1 Tax=labyrinthulid q... [more]
A0A812PYB9_SYMPI4.860e-653.85PSL4 protein n=1 Tax=Symbiodinium pilosum TaxID=29... [more]
A0A137NYP4_CONC24.890e-645.90Glucosidase 2 subunit beta (Fragment) n=1 Tax=Coni... [more]
A0A812XV59_9DINO6.750e-653.85Glucosidase 2 subunit beta n=1 Tax=Symbiodinium sp... [more]
A0A812NR70_9DINO1.010e-553.85PSL4 protein n=1 Tax=Symbiodinium sp. CCMP2456 Tax... [more]
A0A1Q9CHN1_SYMMI1.160e-553.85Uncharacterized protein n=1 Tax=Symbiodinium micro... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig102contigS-ischiensis_contig102:150428..154111 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.5
Seed ortholog evalue2e-34
Seed eggNOG ortholog2880.D7FQB3
Preferred nameGNPTG
KEGG koko:K04246,ko:K05546,ko:K08288,ko:K10087
KEGG ReactionR05980,R05981
KEGG Pathwayko00510,ko01100,ko01522,ko04141,ko04142,ko04915,map00510,map01100,map01522,map04141,map04142,map04915
KEGG ModuleM00073,M00074
GOsGO:0000139,GO:0000271,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005794,GO:0005975,GO:0005976,GO:0006464,GO:0006486,GO:0006487,GO:0006491,GO:0006605,GO:0006622,GO:0006623,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0007034,GO:0007041,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016051,GO:0016256,GO:0016310,GO:0017177,GO:0019538,GO:0031090,GO:0031974,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034645,GO:0036211,GO:0042742,GO:0042802,GO:0042803,GO:0042886,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046835,GO:0046907,GO:0046983,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0061462,GO:0070013,GO:0070085,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072665,GO:0072666,GO:0098542,GO:0098588,GO:0098791,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.N-glycan processing
EggNOG OGsKOG2397@1,KOG2397@2759
EC3.2.1.84
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04030,ko04091
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionalpha-Glucosidase II, beta subunit
Ec32 orthologEc-01_006760.1
Exons5
Model size589
Cds size588
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig102.1748.1prot_S-ischiensis_contig102.1748.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig102 150429..154111 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815554.1180868-CDS-S-ischiensis_contig102:150428..1505781622815554.1180868-CDS-S-ischiensis_contig102:150428..150578Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 150429..150578 -
1695739766.1331515-CDS-S-ischiensis_contig102:150428..1505781695739766.1331515-CDS-S-ischiensis_contig102:150428..150578Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 150429..150578 -
1622815554.1298077-CDS-S-ischiensis_contig102:151881..1520491622815554.1298077-CDS-S-ischiensis_contig102:151881..152049Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 151882..152049 -
1695739766.14441-CDS-S-ischiensis_contig102:151881..1520491695739766.14441-CDS-S-ischiensis_contig102:151881..152049Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 151882..152049 -
1622815554.139535-CDS-S-ischiensis_contig102:152414..1525771622815554.139535-CDS-S-ischiensis_contig102:152414..152577Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 152415..152577 -
1695739766.1526992-CDS-S-ischiensis_contig102:152414..1525771695739766.1526992-CDS-S-ischiensis_contig102:152414..152577Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 152415..152577 -
1622815554.1492221-CDS-S-ischiensis_contig102:153676..1537271622815554.1492221-CDS-S-ischiensis_contig102:153676..153727Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 153677..153727 -
1695739766.1611264-CDS-S-ischiensis_contig102:153676..1537271695739766.1611264-CDS-S-ischiensis_contig102:153676..153727Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 153677..153727 -
1622815554.157739-CDS-S-ischiensis_contig102:154055..1541111622815554.157739-CDS-S-ischiensis_contig102:154055..154111Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 154056..154111 -
1695739766.174161-CDS-S-ischiensis_contig102:154055..1541111695739766.174161-CDS-S-ischiensis_contig102:154055..154111Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 154056..154111 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig102.1748.1

>prot_S-ischiensis_contig102.1748.1 ID=prot_S-ischiensis_contig102.1748.1|Name=mRNA_S-ischiensis_contig102.1748.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=196bp
ATSAARAWRWNGAADALTRYQQGGLPALSRSLDYRRYPALRSVRMWLDSY
LSYDSPAWWGGRPLLVMWDAPLLLYHSLFPEMDENYQRPEAALLREGIAA
AQEARARSRREWDKAREEANRMLALDLGPGRAYAALADKCLEMTEGEYKY
SVCLFREAKQGSSSLGRWDGWGPSRNPDNSHGLAPPAGRADGASGG
back to top

mRNA from alignment at S-ischiensis_contig102:150428..154111-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig102.1748.1 ID=mRNA_S-ischiensis_contig102.1748.1|Name=mRNA_S-ischiensis_contig102.1748.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3684bp|location=Sequence derived from alignment at S-ischiensis_contig102:150428..154111- (Schizocladia ischiensis KU_0333)
GCGACCAGCGCGGCGAGGGCGTGGCGGTGGAACGGGGCGGCGGACGCCCT
GACCAGGTGATCTAGGTGCTGCCTACTGCGGCAACTCGAAGTATTTTGGT
ACGAGTTGTAGATGTATGAGGCGCGTGGTCCATGGTCTCGGGACTACGGC
AAGCACAAGGTGAGTACATATATATATATACTTCCATGCACACTCACAGC
ACTTCGGCCATCGACTTGGGCCCTAGCATACAAAAAATCGGGCTTCGGAG
CGCGTCGGCCCTAGCCATCACATTTTATATACTCGCCGACCACTACAGTA
CGTACGTCTGTACCTTACGTCTGCGCCTTCTTTTTTTATTGTGCCGTGAA
CGCCTGCCACCGCCGCCGAAACCCGACCAAGCAGGTACCAGCAAGGCGGG
CTTCCGGCCCTGAGCCGCTCGCTGGACTACCGCCGGTGAGTCTTTTAGCC
CTTTTACCCCTGGTAAATTGGAGTTCCACACTAAAACCCTATGATAGTAC
GGACCCAGGGGTAAAAGGGTTGAGACCGTACACTGATGTGATGTGATGTG
ATGTCAAACTACTGTACATCAGTGGCTTCTTCAGTTCTCAGTGTACTCGT
ACATGTTGGACACCTCTTGTTTCCCACTCGCTTGTTTGTCTTCTTGCAAG
AAACTGTATTTTTTTGCGCACACATCACACACAATCTCCCAATACGAATT
TAGCTAACCTGCGTCCGCACATCACTCCCCCCCCCCCCCCCCGGCCGGCA
GTGATGGAATATCTAAGCAAATCAACCTGTTTACCGACAATACTGATTTT
AAGTGTTTTTGATGGCATGCGAGTTCCGACAGTACTGATTTATGTATCAA
TCGATAGTCGATATTCGATAGTTTGACCCACACTAAATCTAAGTACTTCG
AAGTAGTTAGTAACACGACGCACAGAATCAGTCGAGCCCGATAACTACAA
CACTGATCGATATTCCATAACTGCCGGTTTTCTGCTCCGTGTGCCCTGCG
AGTGAAGGCGCGTGAAAAGATGGGCTTCCGGGGAAGGGGGCCCTGAACTC
GCGTAAGTAGGAACACCTCCTCTTTCCCATTTTCTTTTTATCTTCACGCC
AACAACTGCCGGCTGGTACCCCGCGTTGCGATCGGTGAGGATGTGGCTGG
ACTCCTACCTTTCCTACAACAGCTCGGCGTGGTGGGGGGGGCTAATATCT
AAGCAAATCAACCTATTTATCGACAGTGCTGATCTACACATCCATCGATA
GTCGATATTCGATAGTTTGACCCACACTAAATCCAAGTATTATCAGCAAC
AACACGGGGCGAGGTGCGGGCCATGTCACTAGAGACCTCAGCAATGGCCC
TTCCTTAGCTCGCCAGGGGAAATGTGAGTAGCTACATACTGTAGTAACGC
CACCCACAAATCAGTCGAGCCCGAAAACTACAGTATCTACTGATCGATAT
TCCATCACTGAGGGCCACTGCTGAGATCTTTAGTGACGTGGCCCGCGCCT
CGCCCCGTGTTGTTCCTGTTGCCACTGCCGGCAGGTACCCTGCCTTGCGA
TCGGTGAGGATGTGGCTGGACTCGTATCTTTCCTACGACAGCCCGGCCTG
GTGGGGGGGGCGGCCCCTGCTGGTCATGTGGGACGCCCCCCTGCTGCTGT
ACCACAGCCTCTTCCCCGAGATGGACGAGAACTACCAACGGCCAGAGGTG
AGTTTACAGTACAAACATGTACATCGTTGGCGGTTTTTCTCGTGTTTCTC
TTTTGGTGCGCCCCCCCTGCTGCTGTACCGCAGGCTCTTTCCCGAGATGG
ACGAGAGCTACCAGCGGCCAGAGGTGAGTCTACAGTACAGTGTCGAACTA
CAGCGCACTAGAGTGCATGCCACATCAAATCGTGTCACATCACATCGCAT
CACATCACATCCGCCTATCGTAACCGCCGGAGAGATTCTCATGCGGTATG
GTATCGACTGCTTCCAAGTACACACAGCACATTGGAGTAAGTTACACATC
ACCATAGTTCACAGACGCAGTCCGGACTCTTGCCTCCCTCGCCCAAACCA
ATCATTGGGCAGGCGGCGCTGCTGCGGGAGGGCATCGCCGCAGCCCAGGA
GGCGCGGGCCCGGTCCCGGCGGGAGTGGGACAAGGCCAGGGAGGAGGCAA
ACAGGATGCTGGCGCTCGATCTGGGCCCGGGGCGGGCGTACGCTGCGCTG
GCCGACAAATGCCTGGAGATGACGGAGGGGGTGAGAACCCGGGTGGGGCT
GGTGGTGGTGGGTGGTGGGGGGAGGGCGTATTGGTGGTGGTGGTGTGGAG
GTGGTGGTGGTGCGTGGTGGTGGTGGTGGCGGCGGCGGTGGTGGTGGTGG
TGGTGGTGGTGGTGGTGGTGGTGGTGGTGGCGATGGTGGCGGTGCCGGTG
GTGGTCGTAGTAGTGGTGGTCAGGGCTTAGGGCTATAGGTGTTAAACGTC
AGGGTGTCGCGCTGCCACTATACCCGAGCGCTGTGTGCACCTTCCGCAGG
AAGTGGTTTTCTGGAGTGAATTGCACTGTGCTACACGTGCACCTCTCCTA
TGAGCTTACAATCGACCTGCAGCAATTTCGAGTCGCACAGCTACAAAGCT
TGACACTAGGTTAGGTTTTGATGCGGCCAACGACGCTGGCACTAGATCAC
GACAGGGCCGATATGGGCGGGAAGCCACAGGGATGGAGGCGGAGGCATTT
ACCCCCCCCCCCCGCCTCCCCTTCCCGCGCATACACCGCCCTGCCCACCT
GCTACATGCTTTGGCGCACTATCACAGGAGCTACTGTTTCCCGCAAGAGG
TTGCTTGCTCACCTCGTTAGTCGCCCCCAACTCCTGTACAGTAGAATAGG
GCGAGATCGTACAGTACCCATACCCCCCCCCCCCCCCCAACCCCCACCTC
GCCAGGAGTACAAGTACCCGGTGTACCTGTTTTGTTCTGCTCGAGAGTTA
CGAATTAGGATATATACTTGCTCCGTCTCGAACGAGGCGCGTGGTCAATG
GTCTCGGGACTACGGCAAGCACCGCGTGAGTACATACATATATATATACT
ACTTCGAAGTACTCGTTCAAGTAGGAAACGGGGGAAGCAACCCAGGTCAA
CTCGGGCCGGCTGCCTCGCCCCCCGCTTCCTACAAGTACTCATACCCCCC
CCCCCAACGGCCACCTCGTTGCCAGGAGTACAAGTACTTGGTGTGCCTCT
TCCGGGAGGCCAAGCAGGGGAGCAGCAGTTGGCGCTACTAGCTGCTTGGA
TTTAGTGTGTGTCAAATATCGAATATCAACTACTGTACTTATCGATAGAC
ATAGAGATCAGTACTATATCCCGCCCTTTTCCTTCTTTATTTTTTGTTTT
CTTTTTGCCCTGCGAGGGGAAGAAGGGCTCCGTTGAGTCCCATTTCGGGA
CGAGCCTTTTGGCACGGGGCCTGGAACTCGCCGCTTATCTACCACTCAAA
ACAGATCAGTACTGTCGATAAATGGGTTGATTTGCTTGCCGTAGAAATTC
CATCACCGCCCCCAACCCCCACCTCGTTGCCAGGAGTACAAGTACTCGGT
GTGCCTCTTCCGGGAGGCCAAGCAGGGGAGCAGCAGCCTGGGCCGCTGGG
ACGGATGGGGCCCGAGCCGCAACCCCGACAATAGCCACGGTCTTGCCCCC
CCCGCCGGGCGTGCTGACGGGGCAAGTGGTGGCG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig102:150428..154111-

>mRNA_S-ischiensis_contig102.1748.1 ID=mRNA_S-ischiensis_contig102.1748.1|Name=mRNA_S-ischiensis_contig102.1748.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1176bp|location=Sequence derived from alignment at S-ischiensis_contig102:150428..154111- (Schizocladia ischiensis KU_0333)
GCGACCAGCGCGGCGAGGGCGTGGCGGTGGAACGGGGCGGCGGACGCCCT
GACCAGGCGACCAGCGCGGCGAGGGCGTGGCGGTGGAACGGGGCGGCGGA
CGCCCTGACCAGGTACCAGCAAGGCGGGCTTCCGGCCCTGAGCCGCTCGC
TGGACTACCGCCGGTACCAGCAAGGCGGGCTTCCGGCCCTGAGCCGCTCG
CTGGACTACCGCCGGTACCCTGCCTTGCGATCGGTGAGGATGTGGCTGGA
CTCGTATCTTTCCTACGACAGCCCGGCCTGGTGGGGGGGGCGGCCCCTGC
TGGTCATGTGGGACGCCCCCCTGCTGCTGTACCACAGCCTCTTCCCCGAG
ATGGACGAGAACTACCAACGGCCAGAGGTACCCTGCCTTGCGATCGGTGA
GGATGTGGCTGGACTCGTATCTTTCCTACGACAGCCCGGCCTGGTGGGGG
GGGCGGCCCCTGCTGGTCATGTGGGACGCCCCCCTGCTGCTGTACCACAG
CCTCTTCCCCGAGATGGACGAGAACTACCAACGGCCAGAGGCGGCGCTGC
TGCGGGAGGGCATCGCCGCAGCCCAGGAGGCGCGGGCCCGGTCCCGGCGG
GAGTGGGACAAGGCCAGGGAGGAGGCAAACAGGATGCTGGCGCTCGATCT
GGGCCCGGGGCGGGCGTACGCTGCGCTGGCCGACAAATGCCTGGAGATGA
CGGAGGGGGCGGCGCTGCTGCGGGAGGGCATCGCCGCAGCCCAGGAGGCG
CGGGCCCGGTCCCGGCGGGAGTGGGACAAGGCCAGGGAGGAGGCAAACAG
GATGCTGGCGCTCGATCTGGGCCCGGGGCGGGCGTACGCTGCGCTGGCCG
ACAAATGCCTGGAGATGACGGAGGGGGAGTACAAGTACTCGGTGTGCCTC
TTCCGGGAGGCCAAGCAGGGGAGCAGCAGCCTGGGCCGCTGGGACGGATG
GGGCCCGAGCCGCAACCCCGACAATAGCCACGGTCTTGCCCCCCCCGCCG
GGCGTGCTGACGGGGCAAGTGGTGGCGAGTACAAGTACTCGGTGTGCCTC
TTCCGGGAGGCCAAGCAGGGGAGCAGCAGCCTGGGCCGCTGGGACGGATG
GGGCCCGAGCCGCAACCCCGACAATAGCCACGGTCTTGCCCCCCCCGCCG
GGCGTGCTGACGGGGCAAGTGGTGGC
back to top