mRNA_S-ischiensis_contig102.1744.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig102.1744.1
Unique NamemRNA_S-ischiensis_contig102.1744.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig102.1744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig102contigS-ischiensis_contig102:119084..120674 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size465
Cds size465
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig102.1744.1prot_S-ischiensis_contig102.1744.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig102 119084..120674 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815552.037144-CDS-S-ischiensis_contig102:119083..1193131622815552.037144-CDS-S-ischiensis_contig102:119083..119313Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 119084..119313 -
1695739764.945617-CDS-S-ischiensis_contig102:119083..1193131695739764.945617-CDS-S-ischiensis_contig102:119083..119313Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 119084..119313 -
1622815552.0510204-CDS-S-ischiensis_contig102:119783..1199251622815552.0510204-CDS-S-ischiensis_contig102:119783..119925Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 119784..119925 -
1695739764.9560392-CDS-S-ischiensis_contig102:119783..1199251695739764.9560392-CDS-S-ischiensis_contig102:119783..119925Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 119784..119925 -
1622815552.0646572-CDS-S-ischiensis_contig102:120581..1206741622815552.0646572-CDS-S-ischiensis_contig102:120581..120674Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 120582..120674 -
1695739764.9671798-CDS-S-ischiensis_contig102:120581..1206741695739764.9671798-CDS-S-ischiensis_contig102:120581..120674Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 120582..120674 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig102.1744.1

>prot_S-ischiensis_contig102.1744.1 ID=prot_S-ischiensis_contig102.1744.1|Name=mRNA_S-ischiensis_contig102.1744.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=155bp
PLEAVVELVEEHMAGTGTWEEVCGHIPYPVAEVEAQQVEEARKENTQGFT
RSGEARGGCKTTATIISGASGGGDVPRAAATAPTSGATQSSLGAAAAAAD
QETEDSSVFAASGATLTALCGLCAVMGAAIALLAAGQRAFRGTGAGGGGA
IGGAG
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mRNA from alignment at S-ischiensis_contig102:119084..120674-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig102.1744.1 ID=mRNA_S-ischiensis_contig102.1744.1|Name=mRNA_S-ischiensis_contig102.1744.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1591bp|location=Sequence derived from alignment at S-ischiensis_contig102:119084..120674- (Schizocladia ischiensis KU_0333)
CCGCTGGAGGCGGTGGTTGAGCTGGTGGAGGAGCACATGGCGGGGACGGG
GACGTGGGAGGAGGTCTGCGGCCACATCCCCTATCCGGTGGCGGTGAGTA
GTGTTAACCCTTTTACCCGTAGGGTCCGTATAATCATAGGGTTTTACTGT
GTAAGTCCAATTTATCAGGGGTAACAGAGTTAGCAGGAACAGCACAGGGC
GAGGTGCAGGCCACGTCACTAAAGACCTGAGCAGTGGCCCTTTCTTGTAG
GTCGCCAGGGGAAATTTGTGTTTGGAAGCGGAGAAAAGGAGCGGTGAGTA
GTAGTGGTGGTGGCGTCGCCGCGGCGGCGGCGGCGGTGGTGGGGCCGGCG
GGGGGGGGAGGGGTCGGTGGTGGGTCAAACCTGTTGACCAAGGGGTACTT
TTGAAGCACTATGTAATCTGCGTCGATATGCCGACCCTGGACGTGTAACC
GCCACACACGCACACGAAACTGCCAGGTGTATACTCATATGCCACATGCA
GCTGCCACACCTAGGTAGCTGCCACATGTACAGCAACTGCCGCACGTAAC
CGCCTCGGGGCCAAACCTGTTGACCAAGGGGTACTTTTGAAGCATTATGT
AGTCTGCGTCGACGCACCGACCCTGGACGTGTAACCGCCGCACACGCACG
TGAAACTGCCACCTGAATATGCCACATGTAACTGCCACACGAAACTGCCA
GGCCTAACTGCCACACGTAACTGCCATGTGTAACTGCCGAAACCGACAGG
AGGTGGAGGCCCAGCAGGTTGAAGAAGCCCGGAAGGAGAACACCCAAGGC
TTCACCCGTTCGGGGGAGGCGCGGGGCGGTTGCAAGACCACTGCGACCAT
TATCAGTGGTGCCAGCGGCGGCGGCGACGTCCCAAGGGCGGGTATGCACT
GTTATGTACACGTAGTACTGTTAGTACTTTGTACTCGAGTACTCGAGTAC
GCGTCATGTCATTTTTGTTGTGATTCATATAAATTGTGCTTCGAAGTACT
TTGAAGTAACGAGGTACAATCACATGCGTGTGAGATTGAGTGTTCTCGTA
TTAGTAGTTGTCCCATTTAAGAAATGAGTGTTAGTTTTTGTTGTACTGTA
AGCATTTTTTCTGAGGCCGCACGCTACGTCCCGGCTATGTACAGTAGTAG
GGATGCGATTTGAGGCCAATGGGCGAAAAGGCGTCTGTACCCTGCAGGCT
CCACCCTGCGGGCACTGATCGGTGGCGGGTCCTGCAAGCATAGGGAGTGT
ACATACTGGGATGTGATGGGGTGTTTAATGCATCAATCACATCACATCCA
AGTAACCTGCTTCTTCTGTTCCCATGCTCGACATCCGATACATTTCCTTC
AAACGCTGCAGCAGCCACGGCCCCCACCAGCGGCGCCACCCAGTCCAGCC
TGGGAGCAGCAGCGGCGGCGGCCGACCAGGAAACCGAAGATAGTAGCGTC
TTCGCCGCCAGTGGCGCGACCCTCACCGCCCTGTGCGGCCTCTGCGCTGT
CATGGGTGCCGCCATCGCGCTCCTAGCCGCCGGCCAGAGGGCATTCCGGG
GGACGGGTGCCGGCGGCGGCGGAGCCATCGGCGGCGCGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig102:119084..120674-

>mRNA_S-ischiensis_contig102.1744.1 ID=mRNA_S-ischiensis_contig102.1744.1|Name=mRNA_S-ischiensis_contig102.1744.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=930bp|location=Sequence derived from alignment at S-ischiensis_contig102:119084..120674- (Schizocladia ischiensis KU_0333)
CCGCTGGAGGCGGTGGTTGAGCTGGTGGAGGAGCACATGGCGGGGACGGG
GACGTGGGAGGAGGTCTGCGGCCACATCCCCTATCCGGTGGCGCCGCTGG
AGGCGGTGGTTGAGCTGGTGGAGGAGCACATGGCGGGGACGGGGACGTGG
GAGGAGGTCTGCGGCCACATCCCCTATCCGGTGGCGGAGGTGGAGGCCCA
GCAGGTTGAAGAAGCCCGGAAGGAGAACACCCAAGGCTTCACCCGTTCGG
GGGAGGCGCGGGGCGGTTGCAAGACCACTGCGACCATTATCAGTGGTGCC
AGCGGCGGCGGCGACGTCCCAAGGGCGGGAGGTGGAGGCCCAGCAGGTTG
AAGAAGCCCGGAAGGAGAACACCCAAGGCTTCACCCGTTCGGGGGAGGCG
CGGGGCGGTTGCAAGACCACTGCGACCATTATCAGTGGTGCCAGCGGCGG
CGGCGACGTCCCAAGGGCGGCAGCCACGGCCCCCACCAGCGGCGCCACCC
AGTCCAGCCTGGGAGCAGCAGCGGCGGCGGCCGACCAGGAAACCGAAGAT
AGTAGCGTCTTCGCCGCCAGTGGCGCGACCCTCACCGCCCTGTGCGGCCT
CTGCGCTGTCATGGGTGCCGCCATCGCGCTCCTAGCCGCCGGCCAGAGGG
CATTCCGGGGGACGGGTGCCGGCGGCGGCGGAGCCATCGGCGGCGCGGGG
CAGCCACGGCCCCCACCAGCGGCGCCACCCAGTCCAGCCTGGGAGCAGCA
GCGGCGGCGGCCGACCAGGAAACCGAAGATAGTAGCGTCTTCGCCGCCAG
TGGCGCGACCCTCACCGCCCTGTGCGGCCTCTGCGCTGTCATGGGTGCCG
CCATCGCGCTCCTAGCCGCCGGCCAGAGGGCATTCCGGGGGACGGGTGCC
GGCGGCGGCGGAGCCATCGGCGGCGCGGGG
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