mRNA_S-ischiensis_contig102.1742.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig102.1742.1
Unique NamemRNA_S-ischiensis_contig102.1742.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig102.1742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig102contigS-ischiensis_contig102:99458..103460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size472
Cds size471
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig102.1742.1prot_S-ischiensis_contig102.1742.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig102 99458..103459 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815551.967748-CDS-S-ischiensis_contig102:99457..994831622815551.967748-CDS-S-ischiensis_contig102:99457..99483Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 99458..99483 +
1695739764.9156258-CDS-S-ischiensis_contig102:99457..994831695739764.9156258-CDS-S-ischiensis_contig102:99457..99483Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 99458..99483 +
1622815551.9838612-CDS-S-ischiensis_contig102:99598..997521622815551.9838612-CDS-S-ischiensis_contig102:99598..99752Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 99599..99752 +
1695739764.9266102-CDS-S-ischiensis_contig102:99598..997521695739764.9266102-CDS-S-ischiensis_contig102:99598..99752Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 99599..99752 +
1622815551.9992635-CDS-S-ischiensis_contig102:103168..1034591622815551.9992635-CDS-S-ischiensis_contig102:103168..103459Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 103169..103459 +
1695739764.9353945-CDS-S-ischiensis_contig102:103168..1034591695739764.9353945-CDS-S-ischiensis_contig102:103168..103459Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 103169..103459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig102.1742.1

>prot_S-ischiensis_contig102.1742.1 ID=prot_S-ischiensis_contig102.1742.1|Name=mRNA_S-ischiensis_contig102.1742.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=157bp
PPPPRSPRSSSTLYCVYNDQTKLLRPCSQGESSTLVKWLFEPSKKSEGAE
GGDDGADPSQSTSESGSGSLLTSMKRMSGRFKKGLGIDDDDATAAAAAAA
AGGEGAPAAPTTQGADEGSEAPSGASTLLFGPGGGSALSRGGSSRKVVRP
AGSAPVV
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mRNA from alignment at S-ischiensis_contig102:99458..103460+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig102.1742.1 ID=mRNA_S-ischiensis_contig102.1742.1|Name=mRNA_S-ischiensis_contig102.1742.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4003bp|location=Sequence derived from alignment at S-ischiensis_contig102:99458..103460+ (Schizocladia ischiensis KU_0333)
CCGCCGCCGCCGCGGAGCCCGCGCAGGTCAGTGTCGCGTGATGTGATGTG
AGGTGATGTGGCGTGACGTGACGTTTTTTGCGATTCTCGGCCGAGGAGGA
ATCCTCACTCCTACTTCGCACTGTCTGTTCTGGCACGTCAGTAGTAGTAC
ATTGTACTGTGTGTATAATGACCAAACCAAACTTTTGCGCCCCTGTTCAC
AGGGCGAGTCCTCGACACTGGTGAAGTGGCTGTTCGAGCCGTCCAAGAAG
TCTGAGGGCGCAGAGGGAGGAGACGATGGCGCGGATCCATCACAGGTGCC
CCCACCCATACTATGGATCTACTTGGAAGTATGTACTTGGAAGTACCCGG
TACTTCCAAGAAAGTATAGTATGAGAACAGTACTTCTGTGCTTGCGCCGT
ACTGCGCAGTTCATCTCTGCAAGCCAAAGCCGGGGCAACTACTGTACAGT
AGTAGCGCTACAGCAGCCGCGGTCGCTGTCGCTCGCCTCGTAAAGGCTGT
TTACCGCAAAGCCAAGCGCCCCCCGCCCGGCCGGCCTCGGCGCGCCGCCG
CACCGCCCTTTTTCACGCCTGCAGGCGGCCATTATTGCTGCTGCAGAGGC
GCAACAACAAGCCCTTATGGAGGCATTTGCACAGCCGCGGCCGGGCGGGG
CGGCGGCACCCTTGGGGATGATGAATTCAACGCTGTCGGGTGGGGGGGGG
GGGCACGACGACGTGTGGTTCTTGTAGAGTAGAGGAGACGGAAAAGCTTT
TCCCGTGTGTGCTGTATTAACAGGAACACAGGGCGAGGTGCAGGCCACGT
CTGTGTGTATTGTAGGTGTTCGCTGGCACGACGATGTGTGGTTCTTGTAG
AGGGGATGGAATGCTTTTTTTCCAAGGGTGTGTGTTGGATAGAGGTGTTC
CCTGGCGGCAGCGGGTGTACTAGTACTGCAGTTCTTAAAAGTAGAGGGGA
TCCATGGATGCTTCGCTTTTCCACCGTGTTGGGAGGCGTTCGCCGCGGCA
CACTGCTTAACCCTTTTACCCCTGGGGTCCGTGTAGTCATAGGTTCTTAG
TGTGTATGTCCAATTTAGCAGGGGTAAAAGGTTTAAGGTGCTGCTCGTCC
AAATCAGGGACGCCATGCTTGTACATAGAGGGGGTGGAAGGCTTTGCCCG
TCCGTGTGTTTGAGAGATGTTTTGCCGCAGCGCCTCGTAAGCGGGCTGCG
GTAGTACTCGGGCGCGAAGCACGTGGTGGTTCTAGGAGAGACACTTGCGC
TTGCAAGAAATGAGCTGCTATGGTGTAGTGCCTCTAGGAGAGACACTTGC
GCTTGCATGAAAGAAGATGCTATGGTATGGTGCTTCTAGGAGAGATGCTT
GCGCTTGCACTTGCAAGAAAGGAGCTGCTATGGGGAGCTCGAGCGCAATG
CACGTGGTGGTTGTGGTGGTGGTGGTGGTCGTGGCGCTTGCACTTGCATG
GTGGTGGTGGTGGTGGTGGTGGCGGCGGCGGTGCCGCGCGATGGTTCTTG
TAGAGACACTCATCCCGCTGACAAATTGACAGCTTTACGAGGCAAGAGAC
AAGCCTCGGCAGCTGCTGCTGTATGTGGAGCCCAAGTACAGTAGAACTGT
ACTCGTAGAGGTACTGTACCCTACTACTGTACTCGAGTACTGTATGTACC
GAAGAGCATTGTACATGGCTAGCTAGGGGGGATGTACGGTTGTATGTGCT
GAAGCACGGCGCCCGCGCACTGTGCTTTAGTCCCGCGAGAGACAGGTGTT
GGAAACACCCGAGTAGTTCGTTACTCAGGAGACTTTGAGTTGGAGAGAGA
GCGTCGTTCATTCGAAACACCCATTGCAAGTACTTAAGTACTTCAGAAGT
AGTTCTTGCCCTGAGAGAGACCACTGTTCGAAACACCCGAGTAGTTAGTT
GCTCAGGAGACTCCAGTTTGAGAGAAACCCAAGTAGTTTCTCAACCCGAG
AGAGATAATTGTTGGAAACACCCAAGTACATAGTTTGCTACACAGGAGAT
TTGAGTTTGATGAGAGAGACCGTATCGTTCGAAACACCCATTGCATGCAG
TTTCTCAGGAGACGATGTACTCAATAAGCCCAATCACATATTTAAGTACA
GTAGGGGACATTTCAAGATGCCCAAGTACATTACAGAGTTTGGAGACCAT
GTACAGTATACTTCGAAGTAATTGGAAACATGCCTATGTACTCGTGCTCA
CATTGTTCTTGCCGGAGTCACGTGGCGCTGTACTTTACATGCGGTCACTG
CTTGTGACGGGGGGCTCGGTTTGGAGGCTTGGCAGGGTGCCCGGCCGACG
GGGCCAGTGTGTTGTGGTTTGGTGCCCCCCCGGGCGGGGGATCGATCGTC
TTCCCTGCCGGCGCCTGTTTGCGTCGAGCGGAGTGTATTGTGGCAGGAAT
GCGGGGATAATATATTGGAAGAGATGTGTTGGCATCGTCGTGTCAAGTGA
TCGCGGGCAGTCCTAGAGGTTCCGAGCGTTCAACAAGATGGCGGTGCGGT
TTTTTTGTTCCCCCTTTTACCCCTGGGGTCCATGTAATCATAGGGATTTA
GTGTGCAAGTCCAATTTAGCAGGGGTAAAAGGCTTATGTACTGTGTGGAG
GACCTGGACTCGGAAGTGCAGTAGCTGTTGCTGCTTTATTATACTGTATG
TGAGTAGCTGTATTTTTGATGTGACGCTGCGCAATGTGATGTCATGATTC
ATCGAAGTATAAATTGTAACGAGATCCAGTCGCACGTGTGTGAGATTTAG
TGTTCTCCATGTGATGTGAGTGGTGCGATGTCAAACTACAGTACATTAGT
CGGTACACATCACATGGCATGTGATGTGGTGTGTGATGTCAAACTACAGT
ACTTCGAGATGTCAAACTACCGTACTTCGAAGTATATTAGATGATGCTCG
TACACATCACATGACATGTGATGTGAGTGGTGCCATGTCAAACTACAGTA
CATTAGATAGTACACATCACATCACATGTGATGTGGTGGTTGTGATGTCA
AACTACAGTGCATTAGACGGTACACGTCGCATCACGTACGTCATGTCACA
TGGCACTGCGGAAAGACTGCTCAGGCTGTTGCAGTACCCGCACGGTTGCA
GCAGAGCGAGCCATACATGCACCTTGGAAGGCGCTTTCACAGTTGTCGGT
TCGGCCTCGCTGGGCTCGGCAGGCGTTGTCAGCCGACACATAGCTCTACG
CTTGTACTAGAATAACAAGACAACAAAACAAGGAAAAAAAACACGAGAAC
CAACAACAAGAGAAAGTCCTTCGGGGGTCAACTGTTTGAGGGCAACGGAC
GACCCCTTTCGCTGCCCCCCTGCATTTGCGGCATCTCTCTGCCGCTTGTT
TCTCCGTGCCCTGCGAGCGAAAGAAGGGTGAACAGTCTCTTTTGATGAGG
CCCCCACCTTTACTGAGGCGTTGGGATGCCCCCCCCCGCGGGGAACTCGC
AAGCGGTCGCAAATAGTACTCTAGCAGATCAAGCAACCCCACCAGGACAC
TCAATCTAACACACGTGCGATTGTAGCTCGTTACATTTGTTTGTTTTGGA
ATTATTTTTTGACATGCAGTTTTTGTGTGGAAAGAAAAGAAGCGCGTGGA
AAATAGAGGTGATCCTACTTTTGCGAGTTCCGGGCCCCAACACGGCAGCC
CGTGACATGCATTTTTTATGAATCAAAACCGCACCCCACCCCCTCCCCCC
ACAACAAACAGAGCACCTCCGAGTCGGGGTCCGGGTCCCTCCTGACCTCG
ATGAAGCGCATGTCCGGCCGGTTCAAGAAGGGCCTCGGCATCGACGACGA
CGATGCCACCGCCGCCGCCGCCGCTGCCGCCGCGGGGGGCGAGGGAGCCC
CAGCGGCCCCCACAACTCAGGGGGCAGACGAGGGCTCGGAGGCACCATCA
GGGGCTTCAACGCTCTTGTTTGGGCCTGGCGGCGGCTCGGCGCTCTCACG
CGGCGGTAGCAGCAGGAAGGTCGTCCGCCCCGCCGGTTCTGCCCCAGTGG
TGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig102:99458..103460+

>mRNA_S-ischiensis_contig102.1742.1 ID=mRNA_S-ischiensis_contig102.1742.1|Name=mRNA_S-ischiensis_contig102.1742.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=942bp|location=Sequence derived from alignment at S-ischiensis_contig102:99458..103460+ (Schizocladia ischiensis KU_0333)
CCGCCGCCGCCGCGGAGCCCGCGCAGCCGCCGCCGCCGCGGAGCCCGCGC
AGTAGTAGTACATTGTACTGTGTGTATAATGACCAAACCAAACTTTTGCG
CCCCTGTTCACAGGGCGAGTCCTCGACACTGGTGAAGTGGCTGTTCGAGC
CGTCCAAGAAGTCTGAGGGCGCAGAGGGAGGAGACGATGGCGCGGATCCA
TCACAGTAGTAGTACATTGTACTGTGTGTATAATGACCAAACCAAACTTT
TGCGCCCCTGTTCACAGGGCGAGTCCTCGACACTGGTGAAGTGGCTGTTC
GAGCCGTCCAAGAAGTCTGAGGGCGCAGAGGGAGGAGACGATGGCGCGGA
TCCATCACAGAGCACCTCCGAGTCGGGGTCCGGGTCCCTCCTGACCTCGA
TGAAGCGCATGTCCGGCCGGTTCAAGAAGGGCCTCGGCATCGACGACGAC
GATGCCACCGCCGCCGCCGCCGCTGCCGCCGCGGGGGGCGAGGGAGCCCC
AGCGGCCCCCACAACTCAGGGGGCAGACGAGGGCTCGGAGGCACCATCAG
GGGCTTCAACGCTCTTGTTTGGGCCTGGCGGCGGCTCGGCGCTCTCACGC
GGCGGTAGCAGCAGGAAGGTCGTCCGCCCCGCCGGTTCTGCCCCAGTGGT
GAGCACCTCCGAGTCGGGGTCCGGGTCCCTCCTGACCTCGATGAAGCGCA
TGTCCGGCCGGTTCAAGAAGGGCCTCGGCATCGACGACGACGATGCCACC
GCCGCCGCCGCCGCTGCCGCCGCGGGGGGCGAGGGAGCCCCAGCGGCCCC
CACAACTCAGGGGGCAGACGAGGGCTCGGAGGCACCATCAGGGGCTTCAA
CGCTCTTGTTTGGGCCTGGCGGCGGCTCGGCGCTCTCACGCGGCGGTAGC
AGCAGGAAGGTCGTCCGCCCCGCCGGTTCTGCCCCAGTGGTG
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