mRNA_S-ischiensis_contig102.1741.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig102.1741.1
Unique NamemRNA_S-ischiensis_contig102.1741.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig102.1741.1 vs. uniprot
Match: D8LFA4_ECTSI (PX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFA4_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 3.020e-33
Identity = 75/195 (38.46%), Postives = 116/195 (59.49%), Query Frame = 2 
Query:  218 RRGSLRSQSNASDESVAVANLEITGVLTPES--GPALYQTTFSRGGWSWKTTHRYSDWFALKDQLQAEYQTERLPPAGDFPPKGTPLSVLGNVLTSCKP----GERPEG-LDARRKGLEKYFSKLLQEHRDVWEESEAVKLFFSPGPPTAYNRA--RRLSAVQRKDQAQA-EAXXXXXXXSSSTMAKLKGLFEPS 772
            R+GS   + +  +  +  A+LE+     P +  GP +Y   ++RGGW W+T+HRYSDW +LK++LQA++    LP    FP K    +++  VL+SC+     G R  G L+ RR+GL+ YFS++L E R++W+ S  +K FFSPGPPT+Y+ A  RR S   ++++ +A EA       + S  + L  LFE S
Sbjct:   14 RKGSGAKRGSEDEGIIGTASLEVLCAAKPNTNTGPTMYDVAYTRGGWIWRTSHRYSDWLSLKERLQADFGKRNLPDDELFPQKEDVGAIIVKVLSSCQGCREGGGRAVGHLEERRRGLQAYFSQVLDEQRELWDSSADIKAFFSPGPPTSYSAALSRRRSEQLKEEKLKAKEASSAASMMACSLKSTLGSLFETS 208
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BLAST of mRNA_S-ischiensis_contig102.1741.1 vs. uniprot
Match: A0A6H5KH88_9PHAE (PX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH88_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 1.130e-32
Identity = 66/183 (36.07%), Postives = 114/183 (62.30%), Query Frame = 2 
Query:  203 RMDYIRRGSLRSQSNASDESVAVANLEIT---------GVLTPESGPALYQTTFSRGGWSWKTTHRYSDWFALKDQLQAEYQTERLPPAGDFPPKGTPLSVLGNVLTSCKP----GERPEG-LDARRKGLEKYFSKLLQEHRDVWEESEAVKLFFSPGPPTAYNRA--RRLSAVQRKDQAQAE 703
            R+   R+GS   + +  + ++A A+L++           +L   +GP +Y+  ++RGGW W+T+HRYSDW +LK++L+A++    LP    FP K    +++G VL+SC+     G R  G ++ RR+GL+ YFS++L E R++W+ S  ++ FFSPGPPT+Y+ A  RR S   ++++ +A+
Sbjct:    9 RLRSPRKGSGAKRGSEDEGAIATASLQVLCAAATEPRPNLLATSAGPTMYEAVYTRGGWIWRTSHRYSDWLSLKERLRADFGKRNLPDDELFPQKEDVGAIIGKVLSSCQGCREGGSRAVGHIEERRRGLQAYFSQVLDEQRELWDSSADIEAFFSPGPPTSYSAALSRRRSEQLKEEKLKAK 191
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig102.1741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFA4_ECTSI3.020e-3338.46PX domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KH88_9PHAE1.130e-3236.07PX domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig102contigS-ischiensis_contig102:94242..99375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPhox homologous domain
Ec32 orthologEc-01_004240.1
Exons5
Model size798
Cds size591
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig102.1741.1prot_S-ischiensis_contig102.1741.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig102 94447..99375 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815553.4225879-UTR-S-ischiensis_contig102:94241..944461622815553.4225879-UTR-S-ischiensis_contig102:94241..94446Schizocladia ischiensis KU_0333UTRS-ischiensis_contig102 94242..94446 +
1695739765.8023608-UTR-S-ischiensis_contig102:94241..944461695739765.8023608-UTR-S-ischiensis_contig102:94241..94446Schizocladia ischiensis KU_0333UTRS-ischiensis_contig102 94242..94446 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815553.4352021-CDS-S-ischiensis_contig102:94446..945921622815553.4352021-CDS-S-ischiensis_contig102:94446..94592Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 94447..94592 +
1695739765.8104086-CDS-S-ischiensis_contig102:94446..945921695739765.8104086-CDS-S-ischiensis_contig102:94446..94592Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 94447..94592 +
1622815553.5737236-CDS-S-ischiensis_contig102:95386..955041622815553.5737236-CDS-S-ischiensis_contig102:95386..95504Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 95387..95504 +
1695739765.8198233-CDS-S-ischiensis_contig102:95386..955041695739765.8198233-CDS-S-ischiensis_contig102:95386..95504Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 95387..95504 +
1622815553.5837927-CDS-S-ischiensis_contig102:96130..962141622815553.5837927-CDS-S-ischiensis_contig102:96130..96214Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 96131..96214 +
1695739765.8305244-CDS-S-ischiensis_contig102:96130..962141695739765.8305244-CDS-S-ischiensis_contig102:96130..96214Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 96131..96214 +
1622815553.5944085-CDS-S-ischiensis_contig102:98169..983371622815553.5944085-CDS-S-ischiensis_contig102:98169..98337Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 98170..98337 +
1695739765.8413696-CDS-S-ischiensis_contig102:98169..983371695739765.8413696-CDS-S-ischiensis_contig102:98169..98337Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 98170..98337 +
1622815553.604935-CDS-S-ischiensis_contig102:99300..993751622815553.604935-CDS-S-ischiensis_contig102:99300..99375Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 99301..99375 +
1695739765.8546035-CDS-S-ischiensis_contig102:99300..993751695739765.8546035-CDS-S-ischiensis_contig102:99300..99375Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 99301..99375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig102.1741.1

>prot_S-ischiensis_contig102.1741.1 ID=prot_S-ischiensis_contig102.1741.1|Name=mRNA_S-ischiensis_contig102.1741.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=197bp
MDYIRRGSLRSQSNASDESVAVANLEITGVLTPESGPALYQTTFSRGGWS
WKTTHRYSDWFALKDQLQAEYQTERLPPAGDFPPKGTPLSVLGNVLTSCK
PGERPEGLDARRKGLEKYFSKLLQEHRDVWEESEAVKLFFSPGPPTAYNR
ARRLSAVQRKDQAQAEAAAAAQEESSSTMAKLKGLFEPSSKKQEGGG
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mRNA from alignment at S-ischiensis_contig102:94242..99375+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig102.1741.1 ID=mRNA_S-ischiensis_contig102.1741.1|Name=mRNA_S-ischiensis_contig102.1741.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5134bp|location=Sequence derived from alignment at S-ischiensis_contig102:94242..99375+ (Schizocladia ischiensis KU_0333)
CTTTGCTTGGCCGGTGGCGCGCTGCAGCTCCGCCGCAACCTAAGGCCGTA
CACGGACCCATACCAGGCACCACGGCATCCCGCCGGCCGAGCACGCATTG
CCGGGCTGCTAACGTAGATGTCCCACTCCCCTTCCCTTTAAGCCGGCCAC
GGGGAACTTGCGGGAAAAAAAGGCAGTGTACTTGTAGACAGACCGGAGAA
GGAGGATGGACTACATTAGGCGGGGCTCCCTGCGGTCTCAATCCAATGCC
TCAGATGAATCCGTGGCCGTGGCGAACCTGGAAATAACCGGCGTCCTCAC
GCCGGAGTCTGGCCCCGCCTTGTACCAGACGACTTTCTCGCGTGGAGGCT
GGTGAGTTCTGCTCAACCTGCCGGAAACAGCGACGGGGTGTTGACCCGGC
TAGGTGGAGAAGTGGAGTAATTGGTTATGTTCCATCCTCAGTCCGCCCCC
GCTGCCTCTCTTTATGCCCGGCCGCCAAATATCGGAGAGTTTGTGTACAA
CGCACCCTCGTGCCTTGTAGGTGAATCCTTCATGGGCTGGGCGTTGTTTC
TCACTGCATCTCCTGCTACCAAATTGCGTGCGGAGCCGTGTGGTTCAGTT
CAACCCCCTCCCCTCGTTTGCATCGTCTCCCAGCACACATCCTTTTCCCC
CTCCCCCCACTACATCCTAAGTAACTTAGCTATACTACCTCTCCACGTCT
CACCCAGCTACTTGCATGGCATTTTCTCATGCACCAGGCATTGCCATTTT
TCGAAAATGTGCCCGGCCCCGAATTGGCTGTACTAGGATATGCCGCCACC
AAACACGTCGGCCGGGCTCAAACCGCCCCCCCGCCCTCCGTCCTTCCTTC
CCGCTGTCTGTCTTGGCATGTGCCGGAACGGCGCGGCGCGGCGCGTTCGT
TGCCGGGCGGTGTGTCTGTCCGGCGGCGGTGGCGCGGGCGGTGGCGGCGC
GGGCGGTGCCCCCCCCCCCCCTCCCCCCCTTTCTTTCACCTTTCCTTGTT
TTTAGTTCCTTCATGTCATCATCGCTAGTAGAGCCTACAAGAACACTCGA
TTCTTGAATGGGACACCTACTAACACGAGAACAGCCAATCTCACACACGT
GCGATTGTACCTCTTTACAATTTATGTGAATCAACCCCCGGGCAGGTCTT
GGAAAACTACGCACCGGTACAGCGATTGGTTCGCCCTCAAGGACCAACTG
CAGGCGGAGTACCAGACAGAACGCCTCCCCCCCGCCGGCGACTTCCCGCC
CAAGGGCACCCCGGTGAGTGAGGACATTGGTGTGGAGCTTGCGCCTGGGC
TACTTAACCCTTTTACCCTTCTTCCGTATAATCATAGGGCTTTAGTGTGT
AAGTCCAATTTTACCAGGGGTAAAAGGGCTAAGTGTGCGGTGTGCACGGC
AGTGGATTGTTTCTTCTGTTCTCGCCGCTTATTGGCGCGCGGGGTGGTCT
CTGTTCCCTCTGCTCGGATGCCTGTACACACTTCTCCAAGTACACTTTGA
GAGTACTGTACTGTATTTCGAAGTACATTGCTACGTTGCGTTGCCTAGTT
CCCCGAGCATATGAGTACTGTATGTGCTGCTCGCTCGCGCTGTCCTTGTT
GCCGTGGTCCCGATTCATTTCGCGCGGTACTGCTCCGTCTCGATCGAGGC
GCATGGTCAATGGTCTCAGGCCTACGGCAAGCACAACGTGAGTACATACG
AAGTATTGGATGGTGAGCCTGACTTTCCGTGCTGGCCGGTCTCTCTTGTC
GCCCCCCCTCTCTGTGTACTGTGCGGTACTCCTGTGTGTTGGGTGTTGTA
TGTGAACGTGTGTGTGTGTGTGTGCGCGCGCATGCGTGTGCATGTGCGTG
TGCGTGTGTGTGTGCATCTCTTGCTTGAAAACGGAGCAGCTGTCGGTGCT
GGGCAATGTGCTAACGTCCTGCAAGCCGGGGGAGCGGCCGGAGGGCCTGG
ACGCCAGGAGAAAGGGGCTGGAGGTAAGCATGGCACAAGAGTGCGATCTT
TTTGCCCAAATAGTTTCATGGGATATCGATTGACGTGTTGCTCGGCCCAT
GTGATGTTGTGGTACGAAAGCTATAGCGCAAATGAACGTACTTGTCGAGC
TCTTTCATTTGTCGAAATTTCACGGTCATCCGATGCGTCCTTCACAAGCT
TAGGGCGGCCCGGGCACCAAAGATAGGGATCGCACTTTTGGGCCATGGTT
AGCTGGAGGTTAGGCTCTGTTGTCTGTGGCCTGCCGCATTCGTCAGAGAG
ATCTTGCCATGCCAATCTTCCCGAGAGGGCAGTTCTCGCCGACAACTGGT
CGGATTCGCGCAGGAAAAAATCGGAAATTCTCCGCAATTCAGGACCTTCC
CGGCTAGAAATATTCCCCCGAGAATTGGCCCATGCGAGCAAAATCTGCGC
GAGGGCAATTCTCGCCCGGTAATACTGGTCGTATTCGCGAGTACGGGCAA
ACTCGGGAAAATCCCCTCGTGACCTGGAGGAATTAGTCCGGGGGATTTCG
GGACGATTCGGAACCTAGGTATTGTGCTCCGCGATATGTATGATGTGATG
TAATCGATGTGATGTGATGTGGTGTGTACTCCATGGTACTGTAGTTTGAC
ATCACATCATGTCACATCACAGTAGTGTCCTGTCGGCCCTCAAAGGGTTA
AGCCTAGCCCTTGGACGACAACGGGACACTCATGTGACGTGATGTGATGT
GATTTGATGCCAAACTACAGTACGTTTGAGTACACAACACATCACATCGC
AGCTCAGTACGCCGCATCATAGTAGCATCCCGTCGTCCTCCAAAGGTTAA
CCCCTTTCCCCCTGGGGTCTGTATTTTCATAGGGTTGTATGGGAGGGGCA
GACGCCAGTTAGGCGGAGTGCAACTCCTTTCGTAGGGGGGTCGCACGTGG
AAGGCGTGCGGATTTTTCCCGGCAGGGTGCATTTCGGCGAGGATGTTCGT
CCGTAGTGACGCTTTTTGGCGGCCTCGACGCCAAGTTCTCGCGCTGTGGT
GCACTGTTCGCGATGCGCCCGGCGCCAAAAGAAAGATAAAAATTAGCGGC
ACCTTACACAAGTTGAAACGCCGTTTGAAGCGCACTGTGGCGCGAGTAGT
GTCGCCTGAGGTGGCCAATTTAATCTCGAGATTTGCACCGCGACAGAGCC
GGTACCAGTAATTTGACAGCGGCGACCATCGGGAATTGCACCGCGATAGA
GCCTGTACCGGTAGTTTGACAGCCTACTGCAGGTACGGAGGGGCGTCCCT
CCCATATTTCCAATCTCGTACTGTGTAAGTCAATATAGCAGGGGTAATAG
GGTTAAGAGGGAGCCTCACCGCAGCGAGGGATCGTATTACTTCCCGCGGC
CCCCGGATGGCCGACGGCCGCCCCAGTCTGTGGGTGCTTGCGCCCATAAC
AGGGTTGATTAGGATTATGGTTTTTCCTTGTGTTTTTAATGCTGTGATGG
TATGCGAGTTCCGGGCCCCGTCCCGAAACCGAAAAGTGGGGACCTCACCA
GAAGCCCTTCTTGTCGCTCGCAGGGCACAAAATTCAAGCAAAGAAGCAAC
AATTTTTCCTTCTCGTTTTATCGAACACGTTCAGGTGCTATAACCTGACG
AAGCACCGCTTGCGAAGAGGGCTGACCCCCCCCCCCCTTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCCCCCCCCC
CTCCTTCTCTCTCTCTCTCCCTCTCCCTCTCTCTCTCTCTCTCTCCCCCT
CTCCCTCCCTCCCTCCCTCCCGCCCTCCCCCCCTCTCTCTCTTTCTCCCT
CTCGCTCTCTCTCTCGCTCTCTCTCTCTCTCCCTCTCCCTCTTCCTCCCT
CTCTCCCTCCCTCCCTCCCTCCCTCTCCCTCCCTCCGTCCCCCCCCCACC
CCTCTCTGTCCGTGTTGTGGTATATCAGAAGTACTTCTCCAAGCTCCTCC
AGGAGCACCGGGACGTGTGGGAGGAGAGCGAGGCGGTCAAGCTCTTCTTC
TCACCGGGCCCGCCCACGGCGTACAACCGGGCCCGGCGGCTCAGCGCCGT
CCAGCGGAAGGACCAGGCGCAGGCGGAGGCGGCGGCGGCGGCACAGGTAT
GCGCCGCACGCAGGCATGCACACACGCACGCACGCACACACACACCCAAG
GCAGTGCCGAGATTTCCCACTGCTGTATGTAGTAGGCGGAGGCGGCGGCA
CAGGTATGGTATGCGCCGCAGGCATGCATGCACGCGTGCACGCACACACA
CACACACACACACACACACACAAGGCAGTGCCGAGATTTCGCACTACCGT
ATCCTACATACGTTGCTTCCTGTGGGAGACTCGGGTACTGAGTCGTACGC
TAACCACCGCGGTAAGGCCCCTGCACAGCCCCCCCATGTGTCGTTTCGTT
TCTCTGCTCTCACGCCTCGCGAGTGAGTGAAGGGAGGGTCAAATCTTCTG
GTGCGGTCCCAAGTGTTGATGTGATGCCACCCTACAGTAAACTAGGGTGC
TCCCTTGTTGCAAGGGCGAGGGGAGGGGGGGCGGTTCGTAGGTACGAAGT
AGTACTTGGCGCTTGGGTGATAGGATTTTGCTTCTTATGCCACCCACCGT
GATTGGCGGCAGGAGGAGTCGTCCTCCTCCACCATGGCCAGGCTCAAGGG
CCTTTATTAGGGGTAATTAGACCTGAAGTGAAGGCTAATTAGGCCCTAAC
TAGGTAATTAGATCTAAAATGAAGGCTACTTTGCGCTAGTTGACCTGTAC
AGGAGGAGTCGTCCTCGTCCACCATGGCCAAGCTCAAGGGCCTATTTGAG
CCGTCGTCCAAGAACCCCGAGGGAGGGGGGTCGTCCAGAAGCTCGCTGGG
GGGTAATTGTACCTAAAATGAAGGCTAATTTGCCCTAGTTAGCCTCTAAT
TAACCTGTACAGAAGGAGTCGTCCTCCACCATGGCCAAGCTCAAGGGCCT
TCATTTTGGGTCAAATTACCCCTAATTACCTCTAATTGAGGCTAATTTGC
CCTAGTTAACCTCTAATAACCTCTAACTAAGGCTAATTTGCCCTAATTAA
CCTCTGCAGGAGGAGTCGTCCTCCACCATGGCCAAGCTGAAGGGCCTGTT
TGAGCCATCCTCCAAGAAGCAAGAGGGAGGGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig102:94242..99375+

>mRNA_S-ischiensis_contig102.1741.1 ID=mRNA_S-ischiensis_contig102.1741.1|Name=mRNA_S-ischiensis_contig102.1741.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1182bp|location=Sequence derived from alignment at S-ischiensis_contig102:94242..99375+ (Schizocladia ischiensis KU_0333)
ATGGACTACATTAGGCGGGGCTCCCTGCGGTCTCAATCCAATGCCTCAGA
TGAATCCGTGGCCGTGGCGAACCTGGAAATAACCGGCGTCCTCACGCCGG
AGTCTGGCCCCGCCTTGTACCAGACGACTTTCTCGCGTGGAGGCTGATGG
ACTACATTAGGCGGGGCTCCCTGCGGTCTCAATCCAATGCCTCAGATGAA
TCCGTGGCCGTGGCGAACCTGGAAATAACCGGCGTCCTCACGCCGGAGTC
TGGCCCCGCCTTGTACCAGACGACTTTCTCGCGTGGAGGCTGGTCTTGGA
AAACTACGCACCGGTACAGCGATTGGTTCGCCCTCAAGGACCAACTGCAG
GCGGAGTACCAGACAGAACGCCTCCCCCCCGCCGGCGACTTCCCGCCCAA
GGGCACCCCGGTCTTGGAAAACTACGCACCGGTACAGCGATTGGTTCGCC
CTCAAGGACCAACTGCAGGCGGAGTACCAGACAGAACGCCTCCCCCCCGC
CGGCGACTTCCCGCCCAAGGGCACCCCGCTGTCGGTGCTGGGCAATGTGC
TAACGTCCTGCAAGCCGGGGGAGCGGCCGGAGGGCCTGGACGCCAGGAGA
AAGGGGCTGGAGCTGTCGGTGCTGGGCAATGTGCTAACGTCCTGCAAGCC
GGGGGAGCGGCCGGAGGGCCTGGACGCCAGGAGAAAGGGGCTGGAGAAGT
ACTTCTCCAAGCTCCTCCAGGAGCACCGGGACGTGTGGGAGGAGAGCGAG
GCGGTCAAGCTCTTCTTCTCACCGGGCCCGCCCACGGCGTACAACCGGGC
CCGGCGGCTCAGCGCCGTCCAGCGGAAGGACCAGGCGCAGGCGGAGGCGG
CGGCGGCGGCACAGAAGTACTTCTCCAAGCTCCTCCAGGAGCACCGGGAC
GTGTGGGAGGAGAGCGAGGCGGTCAAGCTCTTCTTCTCACCGGGCCCGCC
CACGGCGTACAACCGGGCCCGGCGGCTCAGCGCCGTCCAGCGGAAGGACC
AGGCGCAGGCGGAGGCGGCGGCGGCGGCACAGGAGGAGTCGTCCTCCACC
ATGGCCAAGCTGAAGGGCCTGTTTGAGCCATCCTCCAAGAAGCAAGAGGG
AGGGGGGGAGGAGTCGTCCTCCACCATGGCCAAGCTGAAGGGCCTGTTTG
AGCCATCCTCCAAGAAGCAAGAGGGAGGGGGG
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