mRNA_S-ischiensis_contig102.1738.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig102.1738.1
Unique NamemRNA_S-ischiensis_contig102.1738.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig102.1738.1 vs. uniprot
Match: A0A4D9DB22_9STRA (Archease domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DB22_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 2.760e-11
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 2 
Query:    2 LAKHPQGTEVKAITYSNMQIHEEEGRTDLYVIVDI 106
            L+KHPQGTEVKAITYS MQIHE EGR DLYVI+DI
Sbjct:  162 LSKHPQGTEVKAITYSAMQIHENEGRADLYVIIDI 196
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BLAST of mRNA_S-ischiensis_contig102.1738.1 vs. uniprot
Match: UPI00077F84CF (protein archease-like n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI00077F84CF)

HSP 1 Score: 63.9 bits (154), Expect = 3.660e-11
Identity = 28/35 (80.00%), Postives = 33/35 (94.29%), Query Frame = 2 
Query:    2 LAKHPQGTEVKAITYSNMQIHEEEGRTDLYVIVDI 106
            L KHPQGTEVKAITYSNMQ+HE EG+T+L+VI+DI
Sbjct:  138 LDKHPQGTEVKAITYSNMQVHENEGKTELFVIIDI 172
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BLAST of mRNA_S-ischiensis_contig102.1738.1 vs. uniprot
Match: A0A7R9PZW5_9ACAR (Hypothetical protein n=1 Tax=Medioppia subpectinata TaxID=1979941 RepID=A0A7R9PZW5_9ACAR)

HSP 1 Score: 62.0 bits (149), Expect = 4.190e-11
Identity = 28/35 (80.00%), Postives = 33/35 (94.29%), Query Frame = 2 
Query:    2 LAKHPQGTEVKAITYSNMQIHEEEGRTDLYVIVDI 106
            L KHPQGTEVKAIT+SNMQIHE+ GR+D+YVI+DI
Sbjct:   63 LDKHPQGTEVKAITFSNMQIHEKVGRSDVYVIIDI 97
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BLAST of mRNA_S-ischiensis_contig102.1738.1 vs. uniprot
Match: A0A6H5KVM3_9PHAE (Archease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVM3_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 5.840e-11
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 2 
Query:    2 LAKHPQGTEVKAITYSNMQIHE-EEGRTDLYVIVDI 106
            L+KHPQGTEVKAITYSNMQI+E  +GRTD+YVIVDI
Sbjct:   18 LSKHPQGTEVKAITYSNMQINEGPDGRTDIYVIVDI 53
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BLAST of mRNA_S-ischiensis_contig102.1738.1 vs. uniprot
Match: W7TI59_9STRA (Archease domain protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TI59_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 7.870e-11
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 2 
Query:    2 LAKHPQGTEVKAITYSNMQIHEEEGRTDLYVIVDI 106
            L KHPQGTEVKAITYS MQIHE EGR DLYVI+DI
Sbjct:  220 LTKHPQGTEVKAITYSAMQIHENEGRADLYVIIDI 254
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BLAST of mRNA_S-ischiensis_contig102.1738.1 vs. uniprot
Match: A0A7R9KQ39_9ACAR (Hypothetical protein n=2 Tax=Oppiidae TaxID=229795 RepID=A0A7R9KQ39_9ACAR)

HSP 1 Score: 62.0 bits (149), Expect = 1.600e-10
Identity = 28/35 (80.00%), Postives = 33/35 (94.29%), Query Frame = 2 
Query:    2 LAKHPQGTEVKAITYSNMQIHEEEGRTDLYVIVDI 106
            L KHPQGTEVKAIT+SNMQIHE+ GR+D+YVI+DI
Sbjct:  125 LDKHPQGTEVKAITFSNMQIHEKVGRSDVYVIIDI 159
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BLAST of mRNA_S-ischiensis_contig102.1738.1 vs. uniprot
Match: A0A183E0W6_9BILA (Archease domain-containing protein n=1 Tax=Gongylonema pulchrum TaxID=637853 RepID=A0A183E0W6_9BILA)

HSP 1 Score: 60.1 bits (144), Expect = 1.750e-10
Identity = 27/35 (77.14%), Postives = 32/35 (91.43%), Query Frame = 2 
Query:    2 LAKHPQGTEVKAITYSNMQIHEEEGRTDLYVIVDI 106
            LAKHPQGTE+KAITYSNMQ+HE   R+D++VIVDI
Sbjct:   50 LAKHPQGTEIKAITYSNMQVHETPLRSDIFVIVDI 84
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BLAST of mRNA_S-ischiensis_contig102.1738.1 vs. uniprot
Match: UPI0013906AA3 (protein archease-like n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI0013906AA3)

HSP 1 Score: 61.6 bits (148), Expect = 1.940e-10
Identity = 26/35 (74.29%), Postives = 32/35 (91.43%), Query Frame = 2 
Query:    2 LAKHPQGTEVKAITYSNMQIHEEEGRTDLYVIVDI 106
            L KHPQGTEVKAITYSNMQ+H+ EG+ ++YVI+DI
Sbjct:  117 LEKHPQGTEVKAITYSNMQVHDNEGKAEVYVIIDI 151
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BLAST of mRNA_S-ischiensis_contig102.1738.1 vs. uniprot
Match: A0A1D1VZH1_RAMVA (Archease domain-containing protein n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1VZH1_RAMVA)

HSP 1 Score: 60.5 bits (145), Expect = 2.250e-10
Identity = 27/35 (77.14%), Postives = 32/35 (91.43%), Query Frame = 2 
Query:    2 LAKHPQGTEVKAITYSNMQIHEEEGRTDLYVIVDI 106
            LAKHPQGTEVKAITYSN+Q+H +EG  ++YVIVDI
Sbjct:   75 LAKHPQGTEVKAITYSNLQVHNKEGMHEVYVIVDI 109
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BLAST of mRNA_S-ischiensis_contig102.1738.1 vs. uniprot
Match: A0A2J7PUZ6_9NEOP (Protein archease n=2 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7PUZ6_9NEOP)

HSP 1 Score: 61.2 bits (147), Expect = 2.840e-10
Identity = 25/35 (71.43%), Postives = 33/35 (94.29%), Query Frame = 2 
Query:    2 LAKHPQGTEVKAITYSNMQIHEEEGRTDLYVIVDI 106
            + KHPQGTEVKAITYSNMQ+HE EG+++++VI+DI
Sbjct:  119 IGKHPQGTEVKAITYSNMQVHENEGKSEVFVIIDI 153
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig102.1738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4D9DB22_9STRA2.760e-1185.71Archease domain-containing protein n=1 Tax=Nannoch... [more]
UPI00077F84CF3.660e-1180.00protein archease-like n=1 Tax=Parasteatoda tepidar... [more]
A0A7R9PZW5_9ACAR4.190e-1180.00Hypothetical protein n=1 Tax=Medioppia subpectinat... [more]
A0A6H5KVM3_9PHAE5.840e-1183.33Archease domain-containing protein n=1 Tax=Ectocar... [more]
W7TI59_9STRA7.870e-1185.71Archease domain protein n=1 Tax=Nannochloropsis ga... [more]
A0A7R9KQ39_9ACAR1.600e-1080.00Hypothetical protein n=2 Tax=Oppiidae TaxID=229795... [more]
A0A183E0W6_9BILA1.750e-1077.14Archease domain-containing protein n=1 Tax=Gongylo... [more]
UPI0013906AA31.940e-1074.29protein archease-like n=1 Tax=Nematostella vectens... [more]
A0A1D1VZH1_RAMVA2.250e-1077.14Archease domain-containing protein n=1 Tax=Ramazzo... [more]
A0A2J7PUZ6_9NEOP2.840e-1071.43Protein archease n=2 Tax=Cryptotermes secundus Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig102contigS-ischiensis_contig102:67607..68402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size184
Cds size144
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig102.1738.1prot_S-ischiensis_contig102.1738.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig102 67607..68364 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815551.9000754-CDS-S-ischiensis_contig102:67606..676641622815551.9000754-CDS-S-ischiensis_contig102:67606..67664Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 67607..67664 +
1695739764.8850288-CDS-S-ischiensis_contig102:67606..676641695739764.8850288-CDS-S-ischiensis_contig102:67606..67664Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 67607..67664 +
1622815551.9128234-CDS-S-ischiensis_contig102:68278..683641622815551.9128234-CDS-S-ischiensis_contig102:68278..68364Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 68279..68364 +
1695739764.895638-CDS-S-ischiensis_contig102:68278..683641695739764.895638-CDS-S-ischiensis_contig102:68278..68364Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 68279..68364 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815551.9263813-UTR-S-ischiensis_contig102:68364..684021622815551.9263813-UTR-S-ischiensis_contig102:68364..68402Schizocladia ischiensis KU_0333UTRS-ischiensis_contig102 68365..68402 +
1695739764.9048629-UTR-S-ischiensis_contig102:68364..684021695739764.9048629-UTR-S-ischiensis_contig102:68364..68402Schizocladia ischiensis KU_0333UTRS-ischiensis_contig102 68365..68402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig102.1738.1

>prot_S-ischiensis_contig102.1738.1 ID=prot_S-ischiensis_contig102.1738.1|Name=mRNA_S-ischiensis_contig102.1738.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=48bp
PGQAPPGHGGQGNHLLQHADSRGGRTDGPVRHRGHLIAAAAEHLRSE*
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mRNA from alignment at S-ischiensis_contig102:67607..68402+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig102.1738.1 ID=mRNA_S-ischiensis_contig102.1738.1|Name=mRNA_S-ischiensis_contig102.1738.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=796bp|location=Sequence derived from alignment at S-ischiensis_contig102:67607..68402+ (Schizocladia ischiensis KU_0333)
CCTGGCCAAGCACCCCCAGGGCACGGAGGTCAAGGCAATCACCTACTCCA
ACATGCAGGTAGGGCCTAAGGTGCCAAATGAACAGAGACATCCCCCTCTT
CCCCACCTAGTCACGATCACCTACAGCGGTATACTTCGTGACACGCAGGT
ACAGCAGGCAAATACGTTGCGACCAGCGTCGGTGATAGCACCAAGCGCTG
GCGAACCCAACCAAGAGGTTCACCGCCGACTTGGACCCCTTGCCCCTCCC
AAGCCCCCCCTTCCCCGTCCCGTAGGCTCACCCCTGTGATGTGATGTGAT
GTGATGATGTCAAACTACAGCACGTTAGAGTGCACATCACATCACTTACT
TCGAAGTACTTCGAAGTACATCATTTCACATCACATCTCGCAGGCTCACC
CCTGTGGGACTGGGACACGTGGTCAATGGCCTCCCCGACAAGGAGAGGCT
GGCCGTAGCCAGCCCCCCCAACACGGAGAGGTTGGCCGTAGCCAGCCTCC
CCAAGAACAGAGGAAACAGAGCTCCATCCCGTAGGGCCACCCCTGTGAGA
CGCGTAGTCAATGGTCACATGACTATACCTACGGCAGACAACTCTTGAGT
ACCCCCCCCCTTCTCCACTTCCCCCGCTCGGGTCCTGTCTTTTTCGCCCC
CTGGTCATTCTCTCTGCGGCAGATTCACGAGGAGGAAGGACGGACGGACC
TGTACGTCATCGTGGACATTTGATCGCGGCTGCTGCTGAACACTTGAGGA
GCGAATAAACAATCCTCTAGCCTAATAATAATATTGCTTCGCAATA
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Coding sequence (CDS) from alignment at S-ischiensis_contig102:67607..68402+

>mRNA_S-ischiensis_contig102.1738.1 ID=mRNA_S-ischiensis_contig102.1738.1|Name=mRNA_S-ischiensis_contig102.1738.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=288bp|location=Sequence derived from alignment at S-ischiensis_contig102:67607..68402+ (Schizocladia ischiensis KU_0333)
CCTGGCCAAGCACCCCCAGGGCACGGAGGTCAAGGCAATCACCTACTCCA
ACATGCAGCCTGGCCAAGCACCCCCAGGGCACGGAGGTCAAGGCAATCAC
CTACTCCAACATGCAGATTCACGAGGAGGAAGGACGGACGGACCTGTACG
TCATCGTGGACATTTGATCGCGGCTGCTGCTGAACACTTGAGGAGCGAAT
AAATTCACGAGGAGGAAGGACGGACGGACCTGTACGTCATCGTGGACATT
TGATCGCGGCTGCTGCTGAACACTTGAGGAGCGAATAA
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