mRNA_S-ischiensis_contig102.1730.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig102.1730.1
Unique NamemRNA_S-ischiensis_contig102.1730.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig102.1730.1 vs. uniprot
Match: A0A225VSG9_9STRA (Radial spoke protein 11 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VSG9_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.130e-8
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 2 
Query:   50 MEANRIFMPEQIEVHPDLPRILKEYTKAVIREDPGTIEHIVAFSADYFRRK 202
            M+ NRIF  EQI V PDLP++LK++TKAVIRE+PG +   VAFS  +F+ K
Sbjct:    1 MDVNRIFSAEQIAVPPDLPQVLKDWTKAVIRENPGDV---VAFSQQWFQDK 48
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BLAST of mRNA_S-ischiensis_contig102.1730.1 vs. uniprot
Match: A0A812MQM2_9DINO (Hcn4 protein n=2 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812MQM2_9DINO)

HSP 1 Score: 60.8 bits (146), Expect = 6.790e-8
Identity = 33/64 (51.56%), Postives = 40/64 (62.50%), Query Frame = 2 
Query:   38 PSATMEANRIFMPEQIEVHPDLPRILKEYTKAVIREDPGTIEH----IVAFSADYFRRKSGAEG 217
            P   ME NRIF  EQI V P+LP ILK++TKAVIREDP         +  +S DYF++K G  G
Sbjct:  424 PIMAMEVNRIFCAEQINVPPELPDILKDFTKAVIREDPSAGASAKMKLYQWSRDYFKKKLGEVG 487
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BLAST of mRNA_S-ischiensis_contig102.1730.1 vs. uniprot
Match: A0A3R7D617_9STRA (EF-hand domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7D617_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 5.120e-7
Identity = 27/56 (48.21%), Postives = 37/56 (66.07%), Query Frame = 2 
Query:   50 MEANRIFMPEQIEVHPDLPRILKEYTKAVIREDPGTIEHIVAFSADYFRRKSGAEG 217
            M+ NRIF  EQIEV PDLP +LKE+TK VIR  P   + +  FS  +F+ ++  +G
Sbjct:    1 MDVNRIFSAEQIEVPPDLPLVLKEWTKDVIRTSP---DDLAVFSLQWFKDRANEQG 53
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BLAST of mRNA_S-ischiensis_contig102.1730.1 vs. uniprot
Match: A0A813H5N2_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813H5N2_POLGL)

HSP 1 Score: 54.7 bits (130), Expect = 5.480e-7
Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = 2 
Query:   50 MEANRIFMPEQIEVHPDLPRILKEYTKAVIREDP--GTIEHIVA------FSADYFRRK 202
            ME NRIF  EQIEV  +LP ILK++TKAVIREDP  G ++   A      +S DYF+ K
Sbjct:   31 MEINRIFCAEQIEVPGELPDILKDFTKAVIREDPSAGDVDSASARLKLYQWSRDYFKNK 89
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BLAST of mRNA_S-ischiensis_contig102.1730.1 vs. uniprot
Match: A0A8K1CE23_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CE23_PYTOL)

HSP 1 Score: 55.1 bits (131), Expect = 8.150e-7
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 2 
Query:   50 MEANRIFMPEQIEVHPDLPRILKEYTKAVIREDPGTIEHIVAFSADYFRRKS 205
            M+ NRIF  EQI V PDLP ++KE+TK+VIRE+P   E ++ FS  +F+ K+
Sbjct:    1 MDVNRIFSAEQIAVPPDLPHVIKEWTKSVIRENP---EDVLYFSLKWFQDKT 49
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BLAST of mRNA_S-ischiensis_contig102.1730.1 vs. uniprot
Match: A0A2D4C1R7_PYTIN (Radial spoke protein 11 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C1R7_PYTIN)

HSP 1 Score: 54.7 bits (130), Expect = 1.140e-6
Identity = 27/52 (51.92%), Postives = 37/52 (71.15%), Query Frame = 2 
Query:   50 MEANRIFMPEQIEVHPDLPRILKEYTKAVIREDPGTIEHIVAFSADYFRRKS 205
            M+ NRIF  EQI V PDLP +LK++TKAVIR +P   E ++ FS  +F+ K+
Sbjct:    1 MDVNRIFSAEQIAVPPDLPHVLKDWTKAVIRGNP---EDVLQFSLQWFQEKT 49
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BLAST of mRNA_S-ischiensis_contig102.1730.1 vs. uniprot
Match: A0A3F2RFF9_9STRA (EF-hand domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A3F2RFF9_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.430e-6
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 2 
Query:   50 MEANRIFMPEQIEVHPDLPRILKEYTKAVIREDPGTIEHIVAFSADYFRRKS 205
            M+ NRIF  EQI V PDLP++LK++TKAVIRE+P     ++ FS  +F+ K+
Sbjct:    1 MDVNRIFSAEQIAVPPDLPQVLKDWTKAVIRENP---TDLLTFSQQWFQDKA 49
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BLAST of mRNA_S-ischiensis_contig102.1730.1 vs. uniprot
Match: F0W0B7_9STRA (Radial spoke protein 11 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W0B7_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.740e-6
Identity = 30/68 (44.12%), Postives = 41/68 (60.29%), Query Frame = 2 
Query:   38 PSATMEANRIFMPEQIEVHPDLPRILKEYTKAVIREDPGTIEHIVAFSADYFRRKSGAEGTDMYKSKQ 241
            P++ M+ NRIF  EQI V PDLP ILKE+TKAV RE P  +   + FS+ +F+        +  K +Q
Sbjct:   21 PNSYMDINRIFSAEQIAVPPDLPLILKEWTKAVFREHPSDL---LVFSSQWFQEGEKVIQIEKIKEEQ 85
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BLAST of mRNA_S-ischiensis_contig102.1730.1 vs. uniprot
Match: A0A0W8D4I7_PHYNI (Betaine aldehyde dehydrogenase 2 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D4I7_PHYNI)

HSP 1 Score: 55.8 bits (133), Expect = 3.140e-6
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 2 
Query:   50 MEANRIFMPEQIEVHPDLPRILKEYTKAVIREDPGTIEHIVAFSADYFRRKS 205
            M+ NRIF  EQI V PDLP +LK++TKAVIRE+P     ++AFS  +F+ K+
Sbjct:  288 MDVNRIFSAEQIAVPPDLPHVLKDWTKAVIRENP---TDLLAFSQQWFQDKA 336
[Close]
BLAST of mRNA_S-ischiensis_contig102.1730.1 vs. uniprot
Match: A0A8J5J0P0_9STRA (J domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J0P0_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 3.620e-6
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 2 
Query:   41 SATMEANRIFMPEQIEVHPDLPRILKEYTKAVIREDPGTIEHIVAFSADYFRRKS 205
            S  M+ NRIF  EQI V PDLP +LK++TKAVIRE+P     ++AFS  +F+ K+
Sbjct:  867 SNNMDVNRIFSAEQIAVPPDLPHMLKDWTKAVIRENP---TDLLAFSQQWFQDKA 918
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig102.1730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A225VSG9_9STRA1.130e-858.82Radial spoke protein 11 n=1 Tax=Phytophthora megak... [more]
A0A812MQM2_9DINO6.790e-851.56Hcn4 protein n=2 Tax=Symbiodinium sp. CCMP2592 Tax... [more]
A0A3R7D617_9STRA5.120e-748.21EF-hand domain-containing protein n=1 Tax=Aphanomy... [more]
A0A813H5N2_POLGL5.480e-754.24Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
A0A8K1CE23_PYTOL8.150e-751.92Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4C1R7_PYTIN1.140e-651.92Radial spoke protein 11 n=1 Tax=Pythium insidiosum... [more]
A0A3F2RFF9_9STRA1.430e-651.92EF-hand domain-containing protein n=9 Tax=Phytopht... [more]
F0W0B7_9STRA1.740e-644.12Radial spoke protein 11 putative n=1 Tax=Albugo la... [more]
A0A0W8D4I7_PHYNI3.140e-653.85Betaine aldehyde dehydrogenase 2 n=1 Tax=Phytophth... [more]
A0A8J5J0P0_9STRA3.620e-652.73J domain-containing protein n=1 Tax=Phytophthora a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig102contigS-ischiensis_contig102:12242..13123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDimerization-anchoring domain of cAMP-dependent protein kinase, regulatory subunit
Ec32 orthologEc-01_006490.1
Exons2
Model size457
Cds size195
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig102.1730.1prot_S-ischiensis_contig102.1730.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig102 12455..13074 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815552.6305623-UTR-S-ischiensis_contig102:12241..124541622815552.6305623-UTR-S-ischiensis_contig102:12241..12454Schizocladia ischiensis KU_0333UTRS-ischiensis_contig102 12242..12454 -
1695739765.2611995-UTR-S-ischiensis_contig102:12241..124541695739765.2611995-UTR-S-ischiensis_contig102:12241..12454Schizocladia ischiensis KU_0333UTRS-ischiensis_contig102 12242..12454 -
1622815552.6743696-UTR-S-ischiensis_contig102:13074..131231622815552.6743696-UTR-S-ischiensis_contig102:13074..13123Schizocladia ischiensis KU_0333UTRS-ischiensis_contig102 13075..13123 -
1695739765.291491-UTR-S-ischiensis_contig102:13074..131231695739765.291491-UTR-S-ischiensis_contig102:13074..13123Schizocladia ischiensis KU_0333UTRS-ischiensis_contig102 13075..13123 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815552.6466358-CDS-S-ischiensis_contig102:12454..124621622815552.6466358-CDS-S-ischiensis_contig102:12454..12462Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 12455..12462 -
1695739765.2732992-CDS-S-ischiensis_contig102:12454..124621695739765.2732992-CDS-S-ischiensis_contig102:12454..12462Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 12455..12462 -
1622815552.6579993-CDS-S-ischiensis_contig102:12887..130741622815552.6579993-CDS-S-ischiensis_contig102:12887..13074Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 12888..13074 -
1695739765.2825582-CDS-S-ischiensis_contig102:12887..130741695739765.2825582-CDS-S-ischiensis_contig102:12887..13074Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 12888..13074 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig102.1730.1

>prot_S-ischiensis_contig102.1730.1 ID=prot_S-ischiensis_contig102.1730.1|Name=mRNA_S-ischiensis_contig102.1730.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=65bp
MEANRIFMPEQIEVHPDLPRILKEYTKAVIREDPGTIEHIVAFSADYFRR
KSGAEGTDMYKSKQ*
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mRNA from alignment at S-ischiensis_contig102:12242..13123-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig102.1730.1 ID=mRNA_S-ischiensis_contig102.1730.1|Name=mRNA_S-ischiensis_contig102.1730.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=882bp|location=Sequence derived from alignment at S-ischiensis_contig102:12242..13123- (Schizocladia ischiensis KU_0333)
CTTACGCAGGCTCGACGCGCCGGTGCCGTCGCCCACCCCGAGCGCCACGA
TGGAGGCCAACCGGATCTTCATGCCCGAGCAGATCGAGGTGCACCCAGAC
CTCCCGCGTATCTTGAAAGAATACACCAAGGCAGTGATTCGCGAGGACCC
AGGGACGATCGAACACATCGTCGCCTTCTCCGCCGACTACTTCCGCCGGA
AGAGCGGGGCCGAGGGCACCGACATGTACAAAAGCAGTGAGTTCCTACCG
GTTGAGGTATACTTGATTCATTACGAAGTAACAGCTCAACAGATTTTTTA
CCTATGCTTCCGTGTGCTGAGGTGAAACTTCCAGTCATAAGCAGTCGGAC
TTGACCAGTGCAAGGGCGGGCGGGTGTGCAAAGTGGCCGTGTCAAGACAG
ATGAGCGTGATGTTCCCCCCTCAGGCGCTGCTTCCTATTGTGCTTCCCGG
CCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCGCGTCCACCTCCCCCTCCTCCTCTTCTCCCCTTCCCC
ACGCCAATTTCCCCCGGTGAGCTATGAGGAAGGGCCACTGCTGAGGTCTT
TAGTGACGTGGCCTGCACCTCGCCCTGTGTTGTTCCTGTTAATACTGCTC
TTCGCCGGCAGAACAATAAGGGCTTCGGGCGCCACGGTGCATGGATGCGC
GTCGAGGACGATGGCTGCGCTTTGGCCCCCGCTGCAGGCTTCTGCCCTTG
AGGCACACACAGGGCCTACTCTGCAAGTGCCAAAGGAAACAGGCGCAACA
AAGCGGGCGGCGAAGAGGATTGGAAAAGAGCGCAGAACATCCATCAACGC
GCTGGGCTGGGCGCGAGCCGAGCTGATGTTGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig102:12242..13123-

>mRNA_S-ischiensis_contig102.1730.1 ID=mRNA_S-ischiensis_contig102.1730.1|Name=mRNA_S-ischiensis_contig102.1730.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=390bp|location=Sequence derived from alignment at S-ischiensis_contig102:12242..13123- (Schizocladia ischiensis KU_0333)
ATGGAGGCCAACCGGATCTTCATGCCCGAGCAGATCGAGGTGCACCCAGA
CCTCCCGCGTATCTTGAAAGAATACACCAAGGCAGTGATTCGCGAGGACC
CAGGGACGATCGAACACATCGTCGCCTTCTCCGCCGACTACTTCCGCCGG
AAGAGCGGGGCCGAGGGCACCGACATGTACAAAAGCAATGGAGGCCAACC
GGATCTTCATGCCCGAGCAGATCGAGGTGCACCCAGACCTCCCGCGTATC
TTGAAAGAATACACCAAGGCAGTGATTCGCGAGGACCCAGGGACGATCGA
ACACATCGTCGCCTTCTCCGCCGACTACTTCCGCCGGAAGAGCGGGGCCG
AGGGCACCGACATGTACAAAAGCAAACAATAAAACAATAA
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