mRNA_S-ischiensis_contig100.1689.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig100.1689.1
Unique NamemRNA_S-ischiensis_contig100.1689.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig100.1689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig100contigS-ischiensis_contig100:333922..334224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size164
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815545.5898888-CDS-S-ischiensis_contig100:333921..3340251622815545.5898888-CDS-S-ischiensis_contig100:333921..334025Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 333922..334025 +
1695739760.8838906-CDS-S-ischiensis_contig100:333921..3340251695739760.8838906-CDS-S-ischiensis_contig100:333921..334025Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 333922..334025 +
1622815545.606077-CDS-S-ischiensis_contig100:334166..3342241622815545.606077-CDS-S-ischiensis_contig100:334166..334224Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 334167..334224 +
1695739760.8967474-CDS-S-ischiensis_contig100:334166..3342241695739760.8967474-CDS-S-ischiensis_contig100:334166..334224Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 334167..334224 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig100.1689.1prot_S-ischiensis_contig100.1689.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig100 333922..334224 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig100.1689.1

>prot_S-ischiensis_contig100.1689.1 ID=prot_S-ischiensis_contig100.1689.1|Name=mRNA_S-ischiensis_contig100.1689.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=54bp
RKTGFARTNTTFTRRKTGFARRSCASCHLRSPLPCHREHLFTSVKGSLFP
RGHG
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mRNA from alignment at S-ischiensis_contig100:333922..334224+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig100.1689.1 ID=mRNA_S-ischiensis_contig100.1689.1|Name=mRNA_S-ischiensis_contig100.1689.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=303bp|location=Sequence derived from alignment at S-ischiensis_contig100:333922..334224+ (Schizocladia ischiensis KU_0333)
AGAAAGACCGGCTTCGCGAGGACAAACACGACCTTCACGAGAAGGAAAAC
CGGCTTCGCGAGGAGAAGCTGCGCCTCATGCCATCTCCGCAGCCCGCTGC
CCTGGTGCGAACCAAAAAGAACCACGAAGAACCAGGAAGAACCAAAAAGA
ACCACTGACCGAAATGTGGCGACCGCGACCACGCGAGCTTACGGCCCCCG
TTCCATCCGTATCTTCGTTCCTGCCATCGACCAATGGCCTTGAAGCCATC
GTGAGCACCTTTTCACCAGCGTGAAGGGCTCTCTGTTCCCGCGGGGCCAT
GGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig100:333922..334224+

>mRNA_S-ischiensis_contig100.1689.1 ID=mRNA_S-ischiensis_contig100.1689.1|Name=mRNA_S-ischiensis_contig100.1689.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=324bp|location=Sequence derived from alignment at S-ischiensis_contig100:333922..334224+ (Schizocladia ischiensis KU_0333)
AGAAAGACCGGCTTCGCGAGGACAAACACGACCTTCACGAGAAGGAAAAC
CGGCTTCGCGAGGAGAAGCTGCGCCTCATGCCATCTCCGCAGCCCGCTGC
CCTGAGAAAGACCGGCTTCGCGAGGACAAACACGACCTTCACGAGAAGGA
AAACCGGCTTCGCGAGGAGAAGCTGCGCCTCATGCCATCTCCGCAGCCCG
CTGCCCTGCCATCGTGAGCACCTTTTCACCAGCGTGAAGGGCTCTCTGTT
CCCGCGGGGCCATGGCCCATCGTGAGCACCTTTTCACCAGCGTGAAGGGC
TCTCTGTTCCCGCGGGGCCATGGC
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