Homology
BLAST of mRNA_S-ischiensis_contig100.1685.1 vs. uniprot
Match:
D7FKQ4_ECTSI (Actin-related protein 2/3 complex subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKQ4_ECTSI)
HSP 1 Score: 284 bits (726), Expect = 1.640e-94
Identity = 136/170 (80.00%), Postives = 156/170 (91.76%), Query Frame = 3
Query: 60 MANTLRPYLNTIKGTLDAALCIRNFPSQTVERHNKPEVEVRSSKELLLNPVTICRNEQQERCLIESSVNSVRVSIGVKQADDLEAILCKKFTAFLMQRSEHFIIMRRKPTQGYDISFLITHTHLENMWKHKLMAFVIQFMEDVDKEISAMKIAINARGRIVATEFMKAFV 569
MANTLRPYLN I+GTLDAALC+RNFPSQTVERHNKPEVE RSSKELLLNPVTICRNEQ E+CLIE+SVNSVRVSI VKQAD++E ILC KFT+FLMQR+E F++MRRKP +G+DISFL+TH+HLE +WKHKL+ F+IQFMED+DKEIS MKIAINARGRI+A +FM FV
Sbjct: 1 MANTLRPYLNAIRGTLDAALCLRNFPSQTVERHNKPEVETRSSKELLLNPVTICRNEQ-EKCLIETSVNSVRVSIAVKQADEIETILCHKFTSFLMQRAEQFVVMRRKPAEGFDISFLVTHSHLEKLWKHKLIDFIIQFMEDIDKEISGMKIAINARGRIIAQQFMLQFV 169
BLAST of mRNA_S-ischiensis_contig100.1685.1 vs. uniprot
Match:
A0A836CIE5_9STRA (Actin-related protein 2/3 complex subunit 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIE5_9STRA)
HSP 1 Score: 280 bits (716), Expect = 5.450e-93
Identity = 136/169 (80.47%), Postives = 155/169 (91.72%), Query Frame = 3
Query: 60 MANTLRPYLNTIKGTLDAALCIRNFPSQTVERHNKPEVEVRSSKELLLNPVTICRNEQQERCLIESSVNSVRVSIGVKQADDLEAILCKKFTAFLMQRSEHFIIMRRKPTQGYDISFLITHTHLENMWKHKLMAFVIQFMEDVDKEISAMKIAINARGRIVATEFMKAF 566
MANTLRPYL TI+ TLDA+LC+RNFPSQTVERHNKPEVEV+SSKELLLNP+TICRNEQ ERCL+ESS+NSVRVSIGVKQAD++E+ILC+KFT FLMQRSE FI+MRRK GYDISFLITH HLE MWKHKL+ FVI+FMED+DKEIS MKIAINAR RIVA+E+++ F
Sbjct: 1 MANTLRPYLTTIRHTLDASLCLRNFPSQTVERHNKPEVEVQSSKELLLNPITICRNEQ-ERCLVESSINSVRVSIGVKQADEIESILCRKFTRFLMQRSEQFIVMRRKAAPGYDISFLITHAHLEGMWKHKLVDFVIEFMEDIDKEISGMKIAINARARIVASEYVRQF 168
BLAST of mRNA_S-ischiensis_contig100.1685.1 vs. uniprot
Match:
A0A067C4Y9_SAPPC (Actin-related protein 2/3 complex subunit 4 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C4Y9_SAPPC)
HSP 1 Score: 258 bits (660), Expect = 1.710e-84
Identity = 123/169 (72.78%), Postives = 147/169 (86.98%), Query Frame = 3
Query: 60 MANTLRPYLNTIKGTLDAALCIRNFPSQTVERHNKPEVEVRSSKELLLNPVTICRNEQQERCLIESSVNSVRVSIGVKQADDLEAILCKKFTAFLMQRSEHFIIMRRKPTQGYDISFLITHTHLENMWKHKLMAFVIQFMEDVDKEISAMKIAINARGRIVATEFMKAF 566
MANTL PYLN I+ TLD ALC++NFPSQ VERHNKPEVEVR SKEL+L P+ ICRNE E+C IE S+NS RVSI +KQAD++E+ILC KF+ FLMQR+E FII+RRKP +GYD+SFLITH+HLEN++KHKL+ F+IQFMED+DKEIS MKI +NARGR+VATEFMK F
Sbjct: 1 MANTLAPYLNAIRATLDGALCLQNFPSQVVERHNKPEVEVRMSKELILTPIVICRNEN-EKCCIEPSINSARVSICIKQADEIESILCHKFSRFLMQRAEQFIILRRKPIEGYDMSFLITHSHLENLYKHKLVDFIIQFMEDIDKEISEMKINLNARGRVVATEFMKQF 168
BLAST of mRNA_S-ischiensis_contig100.1685.1 vs. uniprot
Match:
A0A024TP77_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TP77_9STRA)
HSP 1 Score: 258 bits (660), Expect = 9.260e-84
Identity = 126/171 (73.68%), Postives = 145/171 (84.80%), Query Frame = 3
Query: 60 MANTLRPYLNTIKGTLDAALCIRNFPSQTVERHNKPEVEVRSSKELLLNPVTICRNEQQERCLIESSVNSVRVSIGVKQADDLEAILCKKFTAFLMQRSEHFIIMRRKPTQGYDISFLITHTHLENMWKHKLMAFVIQFMEDVDKEISAMKIAINARGRIVATEFMKAFVA 572
MANTL PYLN I+ TLD ALC++NFPSQ VERHNKPEVEV S+ELLLNPV ICRNE ERC IE S+NS RVSI +KQAD++E ILC KF+ FLMQR+E FIIMRRKP +GY ISFLI HTHLEN++KHKL+ F+IQFMED+DKEIS MKI +NARGR+VATEFMK F +
Sbjct: 50 MANTLAPYLNAIRSTLDGALCLQNFPSQVVERHNKPEVEVGLSRELLLNPVVICRNEN-ERCCIEPSINSTRVSICIKQADEIETILCHKFSRFLMQRAEQFIIMRRKPIEGYSISFLIVHTHLENLYKHKLVDFIIQFMEDIDKEISEMKINLNARGRVVATEFMKQFTS 219
BLAST of mRNA_S-ischiensis_contig100.1685.1 vs. uniprot
Match:
W4GJL2_9STRA (Actin-related protein 2/3 complex subunit 4 n=5 Tax=Aphanomyces TaxID=100860 RepID=W4GJL2_9STRA)
HSP 1 Score: 256 bits (654), Expect = 1.450e-83
Identity = 124/171 (72.51%), Postives = 145/171 (84.80%), Query Frame = 3
Query: 60 MANTLRPYLNTIKGTLDAALCIRNFPSQTVERHNKPEVEVRSSKELLLNPVTICRNEQQERCLIESSVNSVRVSIGVKQADDLEAILCKKFTAFLMQRSEHFIIMRRKPTQGYDISFLITHTHLENMWKHKLMAFVIQFMEDVDKEISAMKIAINARGRIVATEFMKAFVA 572
MANTL PYLN I+ TLDAALC++NFPSQ VERHNKPE+EV S+ELLLNPV ICRNE E+C IE S+NS RVSI +KQAD++E ILC KF+ FLMQR+E FIIMRRK +GY ISFLI HTHLEN++KHKL+ F+IQFMED+DKEIS MKI +NARGR+VATEFMK F +
Sbjct: 1 MANTLAPYLNAIRSTLDAALCLQNFPSQVVERHNKPEIEVGLSRELLLNPVVICRNEN-EKCCIEPSINSTRVSISIKQADEIETILCHKFSRFLMQRAEQFIIMRRKAIEGYSISFLIIHTHLENLYKHKLVDFIIQFMEDIDKEISEMKINLNARGRVVATEFMKQFTS 170
BLAST of mRNA_S-ischiensis_contig100.1685.1 vs. uniprot
Match:
A0A2D4BNX3_PYTIN (Actin-related protein 2/3 complex subunit 4 n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BNX3_PYTIN)
HSP 1 Score: 256 bits (653), Expect = 1.980e-83
Identity = 125/169 (73.96%), Postives = 146/169 (86.39%), Query Frame = 3
Query: 60 MANTLRPYLNTIKGTLDAALCIRNFPSQTVERHNKPEVEVRSSKELLLNPVTICRNEQQERCLIESSVNSVRVSIGVKQADDLEAILCKKFTAFLMQRSEHFIIMRRKPTQGYDISFLITHTHLENMWKHKLMAFVIQFMEDVDKEISAMKIAINARGRIVATEFMKAF 566
MANTL PYL I+ +LDAALC+RNFPSQ VERHNKPEVE+R SKELLLNP+ I RNE E+CLIE S+NS RVSI +KQAD++E ILC KFT FLMQR+E FIIMRR P +GY +SFLITHTHLE+++KHKL+ F+IQFMED+DKEIS MKI++NARGRIVATEFMK F
Sbjct: 1 MANTLAPYLTAIRNSLDAALCLRNFPSQVVERHNKPEVELRLSKELLLNPILIARNEN-EKCLIEPSINSTRVSICIKQADEIETILCHKFTRFLMQRAEQFIIMRRVPVEGYHMSFLITHTHLESLYKHKLIDFIIQFMEDIDKEISEMKISLNARGRIVATEFMKQF 168
BLAST of mRNA_S-ischiensis_contig100.1685.1 vs. uniprot
Match:
K3WN29_GLOUD (Actin-related protein 2/3 complex subunit 4 n=27 Tax=Oomycota TaxID=4762 RepID=K3WN29_GLOUD)
HSP 1 Score: 253 bits (646), Expect = 2.220e-82
Identity = 123/168 (73.21%), Postives = 144/168 (85.71%), Query Frame = 3
Query: 63 ANTLRPYLNTIKGTLDAALCIRNFPSQTVERHNKPEVEVRSSKELLLNPVTICRNEQQERCLIESSVNSVRVSIGVKQADDLEAILCKKFTAFLMQRSEHFIIMRRKPTQGYDISFLITHTHLENMWKHKLMAFVIQFMEDVDKEISAMKIAINARGRIVATEFMKAF 566
ANTL PYL I+ +LD+ALC+RNFPSQ VERHNKPEVE+R SKELLLNP+ ICRNE E+CLIE SVNS RVSI +KQAD++E ILC KF FLMQR++ FIIMRR P +GYD+SFL+ HTHLENM+KHKL+ F+I FMED+DKEIS MKI++NARGRIVATEFMK F
Sbjct: 1 ANTLAPYLTAIRHSLDSALCLRNFPSQVVERHNKPEVELRLSKELLLNPILICRNET-EKCLIEPSVNSTRVSICIKQADEIETILCHKFNRFLMQRADQFIIMRRVPVEGYDMSFLVIHTHLENMYKHKLIDFIITFMEDIDKEISEMKISLNARGRIVATEFMKQF 167
BLAST of mRNA_S-ischiensis_contig100.1685.1 vs. uniprot
Match:
A0A3R6WI01_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6WI01_9STRA)
HSP 1 Score: 256 bits (655), Expect = 3.040e-82
Identity = 125/170 (73.53%), Postives = 144/170 (84.71%), Query Frame = 3
Query: 63 ANTLRPYLNTIKGTLDAALCIRNFPSQTVERHNKPEVEVRSSKELLLNPVTICRNEQQERCLIESSVNSVRVSIGVKQADDLEAILCKKFTAFLMQRSEHFIIMRRKPTQGYDISFLITHTHLENMWKHKLMAFVIQFMEDVDKEISAMKIAINARGRIVATEFMKAFVA 572
ANTL PYLN I+ TLD ALC++NFPSQ VERHNKPEVEV S+ELLLNPV ICRNE ERC IE S+NS RVSI +KQAD++E ILC KF+ FLMQR+E FIIMRRKP +GY ISFLI HTHLEN++KHKL+ F+IQFMED+DKEIS MKI +NARGR+VATEFMK F +
Sbjct: 104 ANTLAPYLNAIRSTLDGALCLQNFPSQVVERHNKPEVEVGLSRELLLNPVVICRNEN-ERCCIEPSINSTRVSICIKQADEIETILCHKFSRFLMQRAEQFIIMRRKPIEGYSISFLIVHTHLENLYKHKLVDFIIQFMEDIDKEISEMKINLNARGRVVATEFMKQFTS 272
BLAST of mRNA_S-ischiensis_contig100.1685.1 vs. uniprot
Match:
A0A7S2BQQ1_9STRA (Actin-related protein 2/3 complex subunit 4 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BQQ1_9STRA)
HSP 1 Score: 253 bits (646), Expect = 3.220e-82
Identity = 119/169 (70.41%), Postives = 145/169 (85.80%), Query Frame = 3
Query: 60 MANTLRPYLNTIKGTLDAALCIRNFPSQTVERHNKPEVEVRSSKELLLNPVTICRNEQQERCLIESSVNSVRVSIGVKQADDLEAILCKKFTAFLMQRSEHFIIMRRKPTQGYDISFLITHTHLENMWKHKLMAFVIQFMEDVDKEISAMKIAINARGRIVATEFMKAF 566
MA TLRPYLN I+ TLDAALC+RNFPSQ VERHNKPE+E++ +KELLLNP+TICR + ERCLIE SVNSVR+SI +KQAD++E +LC KFT FLMQR++ FIIMRRK +GY ISFL+TH HLE MWK+KL+ F+I FMED+D+EISAMK+A+NAR R+VA EF+K F
Sbjct: 11 MAATLRPYLNCIRSTLDAALCLRNFPSQIVERHNKPEIEIKGNKELLLNPITICRTKT-ERCLIEPSVNSVRISIQIKQADEIEEVLCHKFTRFLMQRADQFIIMRRKAKEGYSISFLVTHAHLEKMWKNKLIDFIISFMEDIDREISAMKLAVNARARVVAKEFLKEF 178
BLAST of mRNA_S-ischiensis_contig100.1685.1 vs. uniprot
Match:
A0A7S2CG59_9STRA (Actin-related protein 2/3 complex subunit 4 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CG59_9STRA)
HSP 1 Score: 253 bits (645), Expect = 3.370e-82
Identity = 123/171 (71.93%), Postives = 147/171 (85.96%), Query Frame = 3
Query: 60 MANTLRPYLNTIKGTLDAALCIRNFPSQTVERHNKPEVEVRSSKELLLNPVTICRNEQQERCLIESSVNSVRVSIGVKQADDLEAILCKKFTAFLMQRSEHFIIMRRKPTQGYDISFLITHTHLENMWKHKLMAFVIQFMEDVDKEISAMKIAINARGRIVATEFMKAFVA 572
MA+TL+PYL ++ TL+A LC+RNFPSQTVERHNKPEVEVR SKELLLNP+TICR ++ ERCLIE SVNSVR+SI +KQAD+LE +LC KFT FLMQR++ FIIMRRK +GY ISFL+TH HLE MWK KL+ FVIQFMED+DKEISAMK+A+N+R R VA EF++ FVA
Sbjct: 1 MASTLKPYLACVRTTLNAGLCLRNFPSQTVERHNKPEVEVRGSKELLLNPLTICRTDK-ERCLIEPSVNSVRISIQIKQADELEEVLCHKFTRFLMQRADQFIIMRRKAKEGYSISFLVTHAHLEKMWKDKLIDFVIQFMEDIDKEISAMKLAVNSRARNVAQEFVREFVA 170
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig100.1685.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 1.64e-94 / Id = 80.00 Expect = 5.45e-93 / Id = 80.47 Expect = 1.71e-84 / Id = 72.78 Expect = 9.26e-84 / Id = 73.68 Expect = 1.45e-83 / Id = 72.51 Expect = 1.98e-83 / Id = 73.96 Expect = 2.22e-82 / Id = 73.21 Expect = 3.04e-82 / Id = 73.53 Expect = 3.22e-82 / Id = 70.41 Expect = 3.37e-82 / Id = 71.93 Sequence D7FKQ4_ECTSI A0A836CIE5_9STRA A0A067C4Y9_SAPPC A0A024TP77_9STRA W4GJL2_9STRA A0A2D4BNX3_PYTIN K3WN29_GLOUD A0A3R6WI01_9STRA A0A7S2BQQ1_9STRA A0A7S2CG59_9STRA Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 285.8 Seed ortholog evalue 1.3e-74 Seed eggNOG ortholog 2880.D7FKQ4 Preferred name ARPC4 KEGG rclass RC00048,RC00116 KEGG ko ko:K00275,ko:K05755,ko:K16608 KEGG Reaction R00277,R00278,R01710,R01711 KEGG Pathway ko00750,ko01100,ko01120,ko04144,ko04666,ko04810,ko05100,ko05130,ko05131,ko05132,map00750,map01100,map01120,map04144,map04666,map04810,map05100,map05130,map05131,map05132 KEGG Module M00124 GOs GO:0000001,GO:0000147,GO:0000902,GO:0001667,GO:0002009,GO:0002252,GO:0002253,GO:0002376,GO:0002429,GO:0002431,GO:0002433,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003674,GO:0003779,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005885,GO:0005938,GO:0006810,GO:0006887,GO:0006897,GO:0006909,GO:0006928,GO:0006950,GO:0006996,GO:0007005,GO:0007010,GO:0007015,GO:0007154,GO:0007155,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0008064,GO:0008092,GO:0008150,GO:0008154,GO:0008360,GO:0009611,GO:0009653,GO:0009790,GO:0009888,GO:0009987,GO:0010631,GO:0010638,GO:0012506,GO:0015629,GO:0016020,GO:0016043,GO:0016192,GO:0016331,GO:0016477,GO:0019899,GO:0022603,GO:0022604,GO:0022607,GO:0022610,GO:0023052,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030041,GO:0030139,GO:0030175,GO:0030479,GO:0030659,GO:0030666,GO:0030670,GO:0030832,GO:0030833,GO:0030838,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0031090,GO:0031143,GO:0031252,GO:0031334,GO:0031410,GO:0031982,GO:0032271,GO:0032273,GO:0032501,GO:0032502,GO:0032535,GO:0032940,GO:0032956,GO:0032970,GO:0032989,GO:0032991,GO:0033043,GO:0033627,GO:0034314,GO:0034622,GO:0038093,GO:0038094,GO:0038096,GO:0040011,GO:0042060,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044396,GO:0044422,GO:0044424,GO:0044430,GO:0044433,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045010,GO:0045335,GO:0046903,GO:0048013,GO:0048308,GO:0048311,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048598,GO:0048729,GO:0048856,GO:0048869,GO:0048870,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051258,GO:0051493,GO:0051495,GO:0051640,GO:0051641,GO:0051646,GO:0051674,GO:0051716,GO:0060429,GO:0061024,GO:0061645,GO:0065003,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090066,GO:0090130,GO:0090132,GO:0097435,GO:0097708,GO:0098588,GO:0098657,GO:0098805,GO:0098858,GO:0099568,GO:0110053,GO:0120025,GO:1902903,GO:1902905 EggNOG free text desc. Functions as actin-binding component of the Arp2 3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament EggNOG OGs KOG1876@1,KOG1876@2759 EC 1.4.3.5 COG Functional cat. O Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko00001,ko00002,ko01000,ko04131,ko04812 Hectar predicted targeting category other localisation Ec32 ortholog description Actin-related protein 2/3 complex subunit ARPC4 or p20-Arc (Arp2/3 complex 20 kDa subunit) Ec32 ortholog Ec-21_001730.1 Exons 5 Model size 786 Cds size 516 Stop 1 Start 1
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815547.8926637-UTR-S-ischiensis_contig100:297095..297154 1622815547.8926637-UTR-S-ischiensis_contig100:297095..297154 Schizocladia ischiensis KU_0333 UTR S-ischiensis_contig100 297096..297154 + 1695739762.406937-UTR-S-ischiensis_contig100:297095..297154 1695739762.406937-UTR-S-ischiensis_contig100:297095..297154 Schizocladia ischiensis KU_0333 UTR S-ischiensis_contig100 297096..297154 + 1622815547.9725425-UTR-S-ischiensis_contig100:302620..302831 1622815547.9725425-UTR-S-ischiensis_contig100:302620..302831 Schizocladia ischiensis KU_0333 UTR S-ischiensis_contig100 302621..302831 + 1695739762.4914997-UTR-S-ischiensis_contig100:302620..302831 1695739762.4914997-UTR-S-ischiensis_contig100:302620..302831 Schizocladia ischiensis KU_0333 UTR S-ischiensis_contig100 302621..302831 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815547.903398-CDS-S-ischiensis_contig100:297154..297157 1622815547.903398-CDS-S-ischiensis_contig100:297154..297157 Schizocladia ischiensis KU_0333 CDS S-ischiensis_contig100 297155..297157 + 1695739762.4316995-CDS-S-ischiensis_contig100:297154..297157 1695739762.4316995-CDS-S-ischiensis_contig100:297154..297157 Schizocladia ischiensis KU_0333 CDS S-ischiensis_contig100 297155..297157 + 1622815547.9143727-CDS-S-ischiensis_contig100:297394..297513 1622815547.9143727-CDS-S-ischiensis_contig100:297394..297513 Schizocladia ischiensis KU_0333 CDS S-ischiensis_contig100 297395..297513 + 1695739762.4492462-CDS-S-ischiensis_contig100:297394..297513 1695739762.4492462-CDS-S-ischiensis_contig100:297394..297513 Schizocladia ischiensis KU_0333 CDS S-ischiensis_contig100 297395..297513 + 1622815547.9343746-CDS-S-ischiensis_contig100:298660..298712 1622815547.9343746-CDS-S-ischiensis_contig100:298660..298712 Schizocladia ischiensis KU_0333 CDS S-ischiensis_contig100 298661..298712 + 1695739762.4597619-CDS-S-ischiensis_contig100:298660..298712 1695739762.4597619-CDS-S-ischiensis_contig100:298660..298712 Schizocladia ischiensis KU_0333 CDS S-ischiensis_contig100 298661..298712 + 1622815547.9472752-CDS-S-ischiensis_contig100:300769..300928 1622815547.9472752-CDS-S-ischiensis_contig100:300769..300928 Schizocladia ischiensis KU_0333 CDS S-ischiensis_contig100 300770..300928 + 1695739762.4723444-CDS-S-ischiensis_contig100:300769..300928 1695739762.4723444-CDS-S-ischiensis_contig100:300769..300928 Schizocladia ischiensis KU_0333 CDS S-ischiensis_contig100 300770..300928 + 1622815547.9619746-CDS-S-ischiensis_contig100:302437..302620 1622815547.9619746-CDS-S-ischiensis_contig100:302437..302620 Schizocladia ischiensis KU_0333 CDS S-ischiensis_contig100 302438..302620 + 1695739762.482058-CDS-S-ischiensis_contig100:302437..302620 1695739762.482058-CDS-S-ischiensis_contig100:302437..302620 Schizocladia ischiensis KU_0333 CDS S-ischiensis_contig100 302438..302620 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig100.1685.1
>prot_S-ischiensis_contig100.1685.1 ID=prot_S-ischiensis_contig100.1685.1|Name=mRNA_S-ischiensis_contig100.1685.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=172bp
MANTLRPYLNTIKGTLDAALCIRNFPSQTVERHNKPEVEVRSSKELLLNP back to top mRNA from alignment at S-ischiensis_contig100:297096..302831+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig100.1685.1 ID=mRNA_S-ischiensis_contig100.1685.1|Name=mRNA_S-ischiensis_contig100.1685.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5736bp|location=Sequence derived from alignment at S-ischiensis_contig100:297096..302831+ (Schizocladia ischiensis KU_0333)CAGCAGGGCTCGCCCGCGGCACCGCGCGGAGGGGACCGGAAACAGCGGGG
AGGACCACC ATG GTGAGTCGGAGGGACTGGTACGTGGAGTTAAAAGGCTC
GCGCGAAGCGTGCCCGCCCTAAACCGCGGTCTTTGTGGCATGCGACGGGG
TCAGCCAACCGGGGCGGTTTTCGGCACCGTGAGCAGCTGGCTGCTTTTCC
TGCGCCCGCGCCCATACAGCTGAGCTGATTCCTTTGCCGGGCTCGCCCTT
GCGCTTCCCCCTGTCGCCGACGCTCTCCGCGCCCCTCCTCCTCGGCCAGG
CGAATACATTGCGACCGTACCTCAACACCATTAAGGGGACTCTGGATGCC
GCGCTGTGTATCCGAAACTTCCCCTCTCAGACGGTGGAGCGACACAACAA
GCCGGAGGTGGAAGTAAG GCGAGTGGGACCCGTGTTGGCGCGTCGATGCC
GATTGATTCCTCTGTCATCAACAGCAAGGATGTCTATGGGGCGACAACGA
CGCCATCTGTTGTCGAAGTACTTGTACTACTTCTAAGTACTGTAGTACTC
GTACTGCAGCATGCCTGTTATGTATCGTGAGTCATAGTACCTGCAAGCAC
TAAATCCGAATAGTTGGTCCCGCCAGATCGATGCAACATCCGTGCGCGGT
TTTCATCGGTCTGTTTCATGTTCCGTGGGTCTACAAGTACTCGCACAAGT
ACTCGCTGCCATAGGGCCGTTTTTGTGGCGTGACACCGAATCAGGCTTCC
ATTCCTTCCATCATTCTCCCATTAAGATGGAATAATGACACATTTTGTAA
AAACAAATAATGTGTTCTTCCATTATTCCGATTCATGGAAAATGCGCCGT
TTGCAAAGACGGCCCAATCGCTGGCTCGGGCCCGGCTACGCGCCAAACAG
AGTCCCTCGATTGGCCCTGGTGTCCGCATAGGGACACCTCTTCTTTCCCA
CTCGCTTGTTTATCTTCTTGCATAAAGAAGGGTTGAGTAGAGCTTAACTC
TAAGAGGACAACGGGACACCTGTCCCACGATGAAGCCCTGTGGTTTAGTT
TCCGAATAGTTGGTGTCCTCCAAGGTTGCTGCTGCGAACCCAGGCGCTCG
AGTGTGGTTTTGCTAGTACTTGGGAAAGCAGCAGCTGATCTGATCTGATG
TGATGTCTAGGTACACTGTGCGCTTTTGTGCGTCCTGCGTGCTGCTTCTT
CGCCATGCCTTCGTGCTGAACGTGAACGTGGTGTGATGTCCAACTACTGA
GAACACATTCACTAGAGTTCACCTGACATCACATCACACCAGCTCCCCCG
CATCGTGCTGAACGTGAACGTGGTGTGATGTCCAACTACTGAGAACACAT
TCACTAGAGTTCACCTCACATCACATCACACCAGCTCCCCCGCATGGTAC
CCTGCACGCTACAACTTTTTTTCTATGCCTCTGTGTCCCTCCCACCCTCC
CTTTCTCCCTCCCTCCCCCCCTCCCTTCCTCCTTCCTTCCCTCCCTCCAT
CCATCCTTCCCTCCCTCCTTCCCCGTCTCCTGCCTGTTTTATCGCGGTCC
TCGTCGGCCAATCAGGTCCAGCAAAGAGCTGCTGCTCAACCCGGTGACCA
TCTGCCGCAACGAGCAG GTGTGTTAACCCTTTTACCCCTGCTAAATTGGA
CTTACACACTAAAACCCTATGATTACATGGACCCCAGGGGGAAAACGGTT
AGTGATGCCCGAAGTGCGCTGTACTGTACAATGTGCATGTAGTGTACTGC
ACGACTGTGTGTATACTGCTGCACTTGTGTGTACTTATCTGTACTGTGTG
TACTTGTATACTAGTACTGTGCCCTAGTTTGCTATGTATGCAAAGAGCTC
CGCTCAACCCGGTGACCATCTGCCGCAGCGAGCAGGTGTGGTGATTCGTA
TAAATTGTAGCGAGGTACAATCGCACGTGTGTGAGATTGAGTGTTCTCGT
ATTAGTGGTTTTCTCATTTAAGAACTGATTGTTCTTATGTTAGTGATTGT
CACATCAACAGGCTAGGAACAAGGAGCAGGTGTGGTAACAATACCCGACG
TGTGCGGTACCGTACAATGCGTAGTGTACTGCATGACTGTGTGTATACTG
CTGCCCTCATGTGTGTGTACTTGACTGTACTGTGTGTACTTGTATACTAC
CGTAGTACTTCGAAGTATTGCAACGAGCAGGTGTGGTAACAATGCCCGAC
GTGTGCTGTACTGTACTTGGAAGTACAATATATACGTATATATATATGTG
TGTGTGTACTCACGTGGTGGCGCTCGTCTAGGCGAATGGTCTACCGACGG
CTTTAGCGAGCCCAAGGTCGCGAGTTCGATTCCCTGTGTGGAGTCGATTT
CCCGCGAAATATGGACCCCTCCGGAAACACGTGCAAAATTGACAAAACTC
ATGAGAGCCGTACCGGCTTGTCGGCCCCGGGCCCAATGGCAAAGTCGGGA
TCGGCGGGCGCCTGTCCAGTGAAAAACTGGAATGCTCCGGCCCGGCGTAG
TAGGGCCGCGTGGCCAATGGCCGTAAGGCTACCCCGTATGGGGGCTGACC
CCAGGCCAGCACGGAGTATACTGGCTCGAGTCGGTGGCAAGCACAGGATG
GGATCCTCATCCGCCATGAGTACACACACTCACGTGGTGCTTGCCGTAGT
CCCGAGCCCATCGACCCCGCGCCTCGTTCGAGACGGAGCAGGACAATGTG
TAGTGTACTGCACGACTGTGTGTATACTGCTACGCTTGTATGTACTTCAC
TGTACTAACCCTGTGACCATCTGCTGCAAACGAGCAGCTGTGCTAGCGAT
ACCCCCCGACGTAAGCTGTACTGTACAATGTGTGCAGCAGCGTACTTCAC
GACTGTGTGTATAGTGCTGCTATCACTTGTGTGTACTTCACTGTACCTGT
GTGTACTTGTATACCACTACTACGTGGTAGTACTGCTCCGTCTCGACCGA
GGCGCGTGGTCGATGGTCTCGGGACTATGGCAAGCACAATGTGCGTGCAT
ATACATAGCACTGTACCGTAGTTTACTATGCCGCACCCTTTTGTGACATG
TATACTTGTGTGTACTCCGTATTTGTCTACTACTGTACTGTACTAGAGTA
TACTTTACTATGCCGCACCCTTTTTGTGGAAAACTATACCGTACCTTCTC
CGTCTCAGCGCTGCCACGACCACAACCACCATTGATCGCCACATCCTTCA
CCAATAACACCACCTCCACCACCACCGCCGCCGCCGCCGCCGCCACCGCC
ACCGCCGCCACCACCACCACCGCCACTTGACCGCCCCCACCACTGCTGCC
ATCACTGCCTCCACGACAACCAGCACCACCGCCGCCGCCACCACAACCAC
AACCACCACCAGCACTCGACCGCCCCACTACCGCTACCATCACTGCCGCC
GCCTCCACAACCGCCACCAACACTCACCACCCCCAACGCCACCTCCGGCG
CCGTTTTTCCTTCTTTTCCTTTCCATTCCCCGTCATTTTCTCTTGCCCCC
CCCTCCCCCCCCTTCTTTTTTTTGTTGTTTGTACTTGTTTGATGTGATAA
TCGCTATTACTACGTAGTATACGAACGCTCAGCCTTCAATGGGATAGCCA
CTAATGCGAGAACACTCAATCTGACACATGTGCGATTGTACCTCGTTACA
ATTCTTGACTTTTTGCAAATTGAGCAGGAGCGCTGCCTTATCGAGAGCAG
CGTGAACAGCGTGCGTGTGAGCATCGGCGTCAAGCAAGCGGACGATTTGG
AGGCCATTTTGTGCAAAAAGTTCACCGCCTTCCTCATGCAGCGCTCCGAG
CACTTCATCATCATGCGCCGGAAGCCCACGCAG GTGATTTTTGTTTTCAT
GTACTGTATGCCATACCGTGCGAGGTGATGTGGTGTCAACACTGTACAGT
GGAGTACGTTTGCAGACTCCTGCGATATGAGGACTTTCATCATCATGCGC
CGGAAGCCCTCGCGGGTGATTATTTTTCATGTGTGTCATGCTGTGCGATG
GGATGTGGTGTCAACACTGTACGGTACTTTACCAGACTCCTGTTGTGATG
TGACGTGATGTGATGTGATGCGGTACTTTAGTAGACTCCTGTATTGTGAG
GGCTTGTTGCGATGTGATATGATGTGGTACCAACGCCACAGTACTTTACT
CCTGCACTATGAGGGCGCCGCCATTACACACCGGAAGCCCGAGCGGGTGA
TTATTCCTAATGTATGTTGTGTGGTGTGATGTGATGTGATATATGTACGA
GTATATATCCTACTACATATGCGGTATGACGTGGTTTGCACTCTAAGTGC
ACTGTACTGCAGTTTGACATCACATCACACCACACCACATCGCATCTTTT
TTGTCCAGAGGCTAATGCACTGTAGTTTGACATCACATCACATCTTTTTT
TCGAGAGGCACTCTAATGCGCTGTAGTTTGACATCACATCACATTTTTTT
CGAAAGGCACTCTAATGCGCTGTAGTTTGACGTCACATCACATCTTTTTT
CGAGAGCCAGTACCGTAGTAGAGTACAACGCCCGACGTTAATCATTTTAC
CCCTGGCAAATTGGACTTGCACACTAAAATCCTATTATTGTACGGGCCAC
AGAGGTAAAAGGGTTAACACAGCCGCTGCCGTGGTCTCTCGCTGCCCTCC
TCCGCCCGCCTGGGACATGAAATCAGTGCCGCCGCCGAAATACATACGCT
TACTTCGAGTGTTCATATGAAAAAACTCACAAACGTGCGATTGCACCTCT
TTACGATTTTTTAAATTATTGTGATGGTATGCGAGCCCCAGGCTATATAT
GGTTCACCGCCGAAAATACGTATGTACTTGAAGATCATGTACTCGAGTAC
TCTACTCACTGGCTTGTCTTGAAAAATATAACCTTGTCTTGAAAAATATA
ACCTTGTGTGCTTTTAGCTGGCATGCCTAAGTCAAAAATTCCCCCCCAAA
AACAAACAAAAAAACAGGAGCAGGCCTACAATAAGTCAAAACTTCCCCCC
CTAAAGCAAGAACAAACAAAAAAACAAACGGGGCTATCACACACGCGCAC
CTGGAGAACATGTGCGTGTGTGCGTGTGTAGCTGACATCCCTAAGTCAAA
ACTTCCCCCCACAAAACAAACGAAAACAAAAGCAATTTTCAACTCGCTCC
ACACGAAAAACAGGGCTACGACATCAGCTTCCTGATCACGCACACGCACC
TGGAGAACATGTGTGTGTGTGTATGTGTGCGTGCGTGCGTGTGTAGCTGA
CATCCCTAAGTCCAAACTTCCCCGCACAAAACAAACAAAAAACAACAGTT
TTCTACGCGCTTGTTTATCTTCATGCAAAAAAACAAAAACAGGGCTACGA
CATCAGCTTCCTGATCACGCACACGCACCTGGAGAACATGTGGAAGCACA
AGCTGATGGCCTTTGTCATCCAGTTCATGGAGGATGTCGACAAGGAGATC
AGCGCAATGAAGATAGCCATCAACGCGAGGGGGCGCATCGTGGCGACCGA
ATTCATGAAGGCCTTCGTTGCATGA GTCCTGAAAGCAAAAAAAATAAAAA
TCTGCAACCTTAGTAACGATGATGTACACAACATTGCTTACTGCACAAGG
AGATCAGTGCCATGAAGATCGCCGTCAACGCGAGGGGGCGCATCGTGGCC
ACCGAGTTCATGAAGGCGTTTGTGGCATGAGTGGACTCTGAGGCGTACTC
GTAGGTAACCTTAATAACGATGATTGTAGACAACAA back to top Coding sequence (CDS) from alignment at S-ischiensis_contig100:297096..302831+
>mRNA_S-ischiensis_contig100.1685.1 ID=mRNA_S-ischiensis_contig100.1685.1|Name=mRNA_S-ischiensis_contig100.1685.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1032bp|location=Sequence derived from alignment at S-ischiensis_contig100:297096..302831+ (Schizocladia ischiensis KU_0333) back to top