mRNA_S-ischiensis_contig100.1674.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig100.1674.1
Unique NamemRNA_S-ischiensis_contig100.1674.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig100.1674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig100contigS-ischiensis_contig100:121679..123366 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size173
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815545.3460765-CDS-S-ischiensis_contig100:121679..1217631622815545.3460765-CDS-S-ischiensis_contig100:121679..121763Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 121680..121763 -
1695739760.76656-CDS-S-ischiensis_contig100:121679..1217631695739760.76656-CDS-S-ischiensis_contig100:121679..121763Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 121680..121763 -
1622815545.3566554-CDS-S-ischiensis_contig100:123279..1233661622815545.3566554-CDS-S-ischiensis_contig100:123279..123366Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 123280..123366 -
1695739760.7766242-CDS-S-ischiensis_contig100:123279..1233661695739760.7766242-CDS-S-ischiensis_contig100:123279..123366Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 123280..123366 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig100.1674.1prot_S-ischiensis_contig100.1674.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig100 121680..123366 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig100.1674.1

>prot_S-ischiensis_contig100.1674.1 ID=prot_S-ischiensis_contig100.1674.1|Name=mRNA_S-ischiensis_contig100.1674.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=57bp
TWTRAVPPSPDGPPPPARVVSDPHYGQPQADETRTAVGPSISGFGARDEN
LSGPGVR
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mRNA from alignment at S-ischiensis_contig100:121679..123366-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig100.1674.1 ID=mRNA_S-ischiensis_contig100.1674.1|Name=mRNA_S-ischiensis_contig100.1674.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1688bp|location=Sequence derived from alignment at S-ischiensis_contig100:121679..123366- (Schizocladia ischiensis KU_0333)
ACCTGGACAAGGGCAGTACCCCCCTCCCCAGACGGGCCACCTCCGCCGGC
CCGAGTTGTCAGCGACCCTCACTACGGCCAACCTCAGGTAACCATGGCAC
AAAAGTGCGATGTTAAAAAATAGCAATTTGGGGACGCAAGTCGAGCAAAC
CGATATTTTTGGGAAAATCTCGATATTTGGGCAAGTTCTTAAATTGGGCC
TTCGTTGCCGAAACGCCGTACAAGGTGTGGAAACCCCATGGATTTTGGCA
AATAGCACTTACTCACCAAAATCATCGGGGTTTCCATACCTGGATAGCGT
TTCGCGGCCGGACGTCAATATTTCGATATTTTTGTCGATGTTTGGGCCGG
TTTTCGATCGCAATTTGGGCAAAACTTTCCATATCGCAAAAAAAAATGTT
TGGGCAAAAAAAATTGCACTTTTGTGCCATGGTTACCAGTGGACAAGGGC
AGTACCCCCCTCCCCGGACGGGCCACCTCCGCGGACGCCTGCCATGCCCG
TGCGAGTTGTCGGCGTCCCGCACTGCGGCCAACCTCAGGTCCGGCTTGGT
TTGTTGCAAGAAGATGTTTTCTTCTTGCCCTGCGAGGGAAGGAAGGGCTT
CGTTGAGTCCCGTTTCGGGACGAGCCTTTTGGCACGGGGCCTGGAACTCG
CCGCTTATCTGCTACTGAAGTAAAAAGCGAGTGGGAAAAAGAGGAGGTGT
TTACTTGCGCGAGTTCAGGGCCCCATCCCCGGAAGCCCGTCCTTTCACTC
GATCGCCTTCACTCACAGGGCATACGGAACAGAAAAACAAGGGAAGGAAG
GGCCCTCGCGTTATTGTACCAGGCCCAGTGTGCAAGTACTCCTATGTAGT
GCTGTGGTGCAGTATCAGTACTGTATATGGTACTTCGCACATCTGCAAGC
ACAGTCCAGTTGCCCCCCCCCCATGCACACACTACTCTAGCCCCCCCCCC
ACCGCTTTCAACCCAGTGCAGGCGTGGTTTTGTTGAACTAGTCGTCGCCA
TTTCTGACCCCCGGGGACCACATCATCTGTCACTGACAGGGTTGGCACTT
AGCCTCGAAGTGGTGCCCTTTTAGGCCCTTGCTTAGAGTTATTAGGGGTA
AGTAGACCTAAAATGAAGGCTAGTTAGGCCCTAGTCAACCTCTAAGTGCC
AACCCTGCTCGCTGACTCTCAGGCCGACACGGCTCGGACAGATGTAGGCA
CGGCGATCTCAGGCTCCAGCAGTGATGATCGTGTTTTTATTGAACTACTG
TAGTCGTCGCCATTTTGACCCCCCGGGACCACATTGGCTGCCGGTGTCTC
GCTGACTCCCCCACCGCTTTCAACCCAGTGACGACGTGTTCTTGTTCAAC
AGTCGTCGCCATTTCCGACCCCCCCCTCCCCGGGACCACATTTGGCTGCC
GGTCTCTCACTGACTCTCAGGCTGACGCGACTCGGACAGCCGTAGGCCCA
TCGATCTTAGGCTCACACTACCTAGCGCCCCCCACCCCTGTCAACCCAGT
GACGGCGTGTTTTTGTTGAACTACTATAGTCGTCGCCGTTTCTGACCCCC
CCCCCCCCCCCCCCCGGGACCACATTGGCTGCGGGTCTCTCACTGACTCT
CAGGCTGACGAGACTCGGACAGCCGTAGGCCCATCGATCTCAGGCTTCGG
CGCAAGGGACGAGAACTTGAGCGGTCCGGGCGTGCGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig100:121679..123366-

>mRNA_S-ischiensis_contig100.1674.1 ID=mRNA_S-ischiensis_contig100.1674.1|Name=mRNA_S-ischiensis_contig100.1674.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=342bp|location=Sequence derived from alignment at S-ischiensis_contig100:121679..123366- (Schizocladia ischiensis KU_0333)
ACCTGGACAAGGGCAGTACCCCCCTCCCCAGACGGGCCACCTCCGCCGGC
CCGAGTTGTCAGCGACCCTCACTACGGCCAACCTCAGACCTGGACAAGGG
CAGTACCCCCCTCCCCAGACGGGCCACCTCCGCCGGCCCGAGTTGTCAGC
GACCCTCACTACGGCCAACCTCAGGCTGACGAGACTCGGACAGCCGTAGG
CCCATCGATCTCAGGCTTCGGCGCAAGGGACGAGAACTTGAGCGGTCCGG
GCGTGCGGGCTGACGAGACTCGGACAGCCGTAGGCCCATCGATCTCAGGC
TTCGGCGCAAGGGACGAGAACTTGAGCGGTCCGGGCGTGCGG
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