mRNA_S-ischiensis_contig100.1671.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig100.1671.1
Unique NamemRNA_S-ischiensis_contig100.1671.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig100.1671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig100contigS-ischiensis_contig100:78196..78800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size605
Cds size492
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815545.6494055-CDS-S-ischiensis_contig100:78195..786871622815545.6494055-CDS-S-ischiensis_contig100:78195..78687Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 78196..78687 +
1695739760.904407-CDS-S-ischiensis_contig100:78195..786871695739760.904407-CDS-S-ischiensis_contig100:78195..78687Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 78196..78687 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815545.6633847-UTR-S-ischiensis_contig100:78687..788001622815545.6633847-UTR-S-ischiensis_contig100:78687..78800Schizocladia ischiensis KU_0333UTRS-ischiensis_contig100 78688..78800 +
1695739760.912115-UTR-S-ischiensis_contig100:78687..788001695739760.912115-UTR-S-ischiensis_contig100:78687..78800Schizocladia ischiensis KU_0333UTRS-ischiensis_contig100 78688..78800 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig100.1671.1prot_S-ischiensis_contig100.1671.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig100 78196..78687 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig100.1671.1

>prot_S-ischiensis_contig100.1671.1 ID=prot_S-ischiensis_contig100.1671.1|Name=mRNA_S-ischiensis_contig100.1671.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=164bp
LVATYNTTVQKYSTTVYEVRVLGKCAIGRQQASAETIHTICPHCTRPTPS
HPGLPWAGGRLLRRQWRAVNGLWTTASLSQHEHIVYRAQHKRASLLPTKS
GFSPTSRPQCCTLCCTSKYFEIPTSTVPYVGHSIAASCTCCSTNGAQAKC
TDVSLPIKTQRVV*
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mRNA from alignment at S-ischiensis_contig100:78196..78800+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig100.1671.1 ID=mRNA_S-ischiensis_contig100.1671.1|Name=mRNA_S-ischiensis_contig100.1671.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=605bp|location=Sequence derived from alignment at S-ischiensis_contig100:78196..78800+ (Schizocladia ischiensis KU_0333)
CTTGTTGCTACTTATAATACTACAGTACAGAAGTACAGTACTACTGTGTA
CGAAGTACGAGTACTTGGAAAATGTGCAATCGGGAGGCAACAGGCCTCGG
CTGAAACCATCCACACTATATGCCCACACTGCACAAGACCAACTCCCTCC
CACCCTGGCTTGCCATGGGCAGGAGGGAGATTGCTCCGCCGTCAATGGCG
TGCGGTCAATGGTCTCTGGACTACGGCAAGCTTATCACAACATGAGCACA
TAGTATATAGAGCACAACACAAACGGGCATCCCTCCTCCCCACAAAATCC
GGGTTTTCGCCCACAAGCCGCCCACAATGTTGCACCTTGTGTTGTACTTC
CAAGTACTTTGAAATACCTACTAGTACTGTACCGTACGTAGGGCACAGTA
TTGCTGCTAGCTGTACTTGCTGCAGTACAAACGGTGCCCAGGCAAAGTGT
ACTGATGTTTCCCTTCCGATAAAAACACAGCGTGTAGTGTGAGATTAACT
GTTCTCGTACTAGTAAAAACACGGGGCACATCGGTGGGCGATTTCGACTC
CAGTTTTTCAGCCAACCAACTCACTGAGGCGGTCCGTGTTCAGCCTTCTG
CAGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig100:78196..78800+

>mRNA_S-ischiensis_contig100.1671.1 ID=mRNA_S-ischiensis_contig100.1671.1|Name=mRNA_S-ischiensis_contig100.1671.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=984bp|location=Sequence derived from alignment at S-ischiensis_contig100:78196..78800+ (Schizocladia ischiensis KU_0333)
CTTGTTGCTACTTATAATACTACAGTACAGAAGTACAGTACTACTGTGTA
CGAAGTACGAGTACTTGGAAAATGTGCAATCGGGAGGCAACAGGCCTCGG
CTGAAACCATCCACACTATATGCCCACACTGCACAAGACCAACTCCCTCC
CACCCTGGCTTGCCATGGGCAGGAGGGAGATTGCTCCGCCGTCAATGGCG
TGCGGTCAATGGTCTCTGGACTACGGCAAGCTTATCACAACATGAGCACA
TAGTATATAGAGCACAACACAAACGGGCATCCCTCCTCCCCACAAAATCC
GGGTTTTCGCCCACAAGCCGCCCACAATGTTGCACCTTGTGTTGTACTTC
CAAGTACTTTGAAATACCTACTAGTACTGTACCGTACGTAGGGCACAGTA
TTGCTGCTAGCTGTACTTGCTGCAGTACAAACGGTGCCCAGGCAAAGTGT
ACTGATGTTTCCCTTCCGATAAAAACACAGCGTGTAGTGTGACTTGTTGC
TACTTATAATACTACAGTACAGAAGTACAGTACTACTGTGTACGAAGTAC
GAGTACTTGGAAAATGTGCAATCGGGAGGCAACAGGCCTCGGCTGAAACC
ATCCACACTATATGCCCACACTGCACAAGACCAACTCCCTCCCACCCTGG
CTTGCCATGGGCAGGAGGGAGATTGCTCCGCCGTCAATGGCGTGCGGTCA
ATGGTCTCTGGACTACGGCAAGCTTATCACAACATGAGCACATAGTATAT
AGAGCACAACACAAACGGGCATCCCTCCTCCCCACAAAATCCGGGTTTTC
GCCCACAAGCCGCCCACAATGTTGCACCTTGTGTTGTACTTCCAAGTACT
TTGAAATACCTACTAGTACTGTACCGTACGTAGGGCACAGTATTGCTGCT
AGCTGTACTTGCTGCAGTACAAACGGTGCCCAGGCAAAGTGTACTGATGT
TTCCCTTCCGATAAAAACACAGCGTGTAGTGTGA
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