mRNA_S-ischiensis_contig100.1669.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig100.1669.1
Unique NamemRNA_S-ischiensis_contig100.1669.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig100.1669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig100contigS-ischiensis_contig100:57610..61264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size296
Cds size252
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig100.1669.1prot_S-ischiensis_contig100.1669.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig100 57652..61264 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815545.260028-UTR-S-ischiensis_contig100:57609..576511622815545.260028-UTR-S-ischiensis_contig100:57609..57651Schizocladia ischiensis KU_0333UTRS-ischiensis_contig100 57610..57651 +
1695739760.6608243-UTR-S-ischiensis_contig100:57609..576511695739760.6608243-UTR-S-ischiensis_contig100:57609..57651Schizocladia ischiensis KU_0333UTRS-ischiensis_contig100 57610..57651 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815545.270888-CDS-S-ischiensis_contig100:57651..577091622815545.270888-CDS-S-ischiensis_contig100:57651..57709Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 57652..57709 +
1695739760.7128985-CDS-S-ischiensis_contig100:57651..577091695739760.7128985-CDS-S-ischiensis_contig100:57651..57709Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 57652..57709 +
1622815545.2834747-CDS-S-ischiensis_contig100:58440..585121622815545.2834747-CDS-S-ischiensis_contig100:58440..58512Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 58441..58512 +
1695739760.7299283-CDS-S-ischiensis_contig100:58440..585121695739760.7299283-CDS-S-ischiensis_contig100:58440..58512Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 58441..58512 +
1622815545.2968638-CDS-S-ischiensis_contig100:59489..595541622815545.2968638-CDS-S-ischiensis_contig100:59489..59554Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 59490..59554 +
1695739760.7430236-CDS-S-ischiensis_contig100:59489..595541695739760.7430236-CDS-S-ischiensis_contig100:59489..59554Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 59490..59554 +
1622815545.3133483-CDS-S-ischiensis_contig100:61207..612641622815545.3133483-CDS-S-ischiensis_contig100:61207..61264Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 61208..61264 +
1695739760.756487-CDS-S-ischiensis_contig100:61207..612641695739760.756487-CDS-S-ischiensis_contig100:61207..61264Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 61208..61264 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig100.1669.1

>prot_S-ischiensis_contig100.1669.1 ID=prot_S-ischiensis_contig100.1669.1|Name=mRNA_S-ischiensis_contig100.1669.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=84bp
MQFHVHRRYTTRAGRQLRRVRGSPEHHPQNQRRPANPGRRCPAAAVKDDQ
RMIMAILEDLHASSMEDNFEESWEDSCSHDISDG
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mRNA from alignment at S-ischiensis_contig100:57610..61264+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig100.1669.1 ID=mRNA_S-ischiensis_contig100.1669.1|Name=mRNA_S-ischiensis_contig100.1669.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3655bp|location=Sequence derived from alignment at S-ischiensis_contig100:57610..61264+ (Schizocladia ischiensis KU_0333)
GCGCGCAGCTGCATCGCACCGCACCATGGCGAAGGGCTTTGAATGCAGTT
CCATGTGCACCGAAGATACACCACGCGTGCGGGACGACAACTACGACGAG
GTAGAGCTCCGCAACATGCATCCCCCCGTCCCTGTACCTTTAGCGCAAAA
CAACTCGAGTTGCGGCGGTCTTGCCCCGGGGTGTCCACGAAGCATGAGCT
GCTGCACGGTGCACAGTGCGCCCACCACGCCGCCTGCGCCAACGTCTTCG
TGCGCAACGTGCACCCCCCCGTCCCTGTACTTTTAGCGCAAAACAACTCC
AGTTGCGGCCGCCGATCTTGTGTCCCACGAAGCACGAGCTGCTGGACAGG
GACAGTGCGCCCCCACGCCGCCTGCGCCAACGTCTTCGTGCGCAACGTGC
ACCCACCCGTCCCTGTACTCTTAGCGCAAAACAACTCCGGTTGCAGCGGA
TCTTGTCTCCGATCGAAGCATGAGCTGCTGCACAGCACAGTGCGCCCCCC
ACGCCGCATGCACCAACGTCTTGAGCGCGCAACGTGCACCCCCCCGTCCC
TGCGCTTTTAGCGCAAAACAACTCAGTTGCGGCGTATCTTGTTATGTCCG
ATCGAAGCACGAGCTGCTGCACAGGGCACAGTGCGCCCACCACGCCACCT
GCACCAACGCTTTCCGTGCCTGACTGGAGGGCGGATGCGGCTGGTCCCAT
GACGACTGCTCGGTCCTCAAGATGTTGCACTCACCTCATCTGGCGTACTG
AGTTTTTTCAGTCATCTGACCCCACGCCCCGTGCCTGTCCGCCCGTCTCT
GCCCAATGCCCCCTGACATTGCGCGTCAAAGTTCGAGGCTCTCCTGAACA
CCATCCGCAAAATCAGCGAAGGCCAGCAAACCCTGGCCGCCGCTGTCCAG
CAGGTGAGCACTACGTAGTTGTACTTCCGGAAGTACCTGCAAGTTGTACT
GTACAGAAACTTCGCCGGTCCCTCGGCGGCGCCCTACTATAGTCAGTAGT
TGTGACACTCTTCGTGTCCACGCTCATTAGCGGAGAATGCCGGTTAAGCC
GAGCGAGGCCTAATTAGTACTGTACTCGAGTACAGGAACTTCATCACGTG
CTTCCATTAGAGCTTTAGCCGGCAAAAGCAATCGCCGGTGCTCCCAGTGC
ACACACGCCAATGTTGGCGCATGAAAAGGTTGCGTTGTAGGTGGTACAAC
TTCCCGGCACGAGACATGATCCAAGTACTTCAAGTCCTTGGGTTATGATG
GTGTCCATAACCGCTTGAAGATGTCAATGAACGCATTAGTACATAGCGAC
AGATACTTGTAGATTGTTCCAGACAACCGCTCTCATGGCATGGCTGGCCT
GGTCTGCGCCGTCCCCGTACTCTGACCAGCTGTCAATCGATCAGCGCTGC
ATGCCCCACGCCTGACCGGGCTCCATTGCTCAGCCCCTCTCGCGCGCAGC
GGTGTAGTTTCTAACCTGCAAACATTGCTCATTTCGCACGTGTCGGGCTG
GTGTGTGTGTACTCACATCTCTGTGCATGCCCTGGACCCGAACGATCCTC
GTCTTTGCTCCTTCTGGTGGATCGCTGGCCAGCTGTAGCCGAAGCCATTG
GCCACGCGTCCTATTGGACGGAGCGCGCCGGTTATTTCACCGACAGAACT
TTGGGTCGCACCATACCGGAAATGCCATAGTAGAGCTCTAGAGCAAAAAA
TGAGCATGAACGAAGTGCACACTTCACAAATGCCAGCTTGCTTTTCCCGC
CTATGTATCGCCCTCGGGGGACCGGGAAGAAAGCTGGAGTGACAACTGTG
CTTGTTATCACTCACCCGGTGCTGCCCCTGCTCGTGTGCCTACCTTCCCC
TTCCTCTGCACCACAATGGCACTGACATAGCTGCCGTAAAGGATGACCAG
CGGATGATCATGGCCATTCTGGAGGATCTCCACGCATCCAGCATGGTCAG
TGCGCCCATTCTGTCAAGCTTTGTGGCTGAGCGGCTCGTAGGAGAGGAGC
ACAGTGTGCTACAGTGCAGTGCGTGGCACTTTTAGTTGGGGACAGACTCG
AGTACCTCGGAGCAGATACGGCGAGTTTAGATATGCGGAGGCGTTTTGTA
GCCGCGGTTCAAGCTTGAAGGCACACGCCGTCCAAGGTGTGCACGCAGAT
CTAATTGCTGATCACTCTCCCGAAACACCACTTCTGCGGAAGGCACATAC
AGCGCTCGGGGATGTCGTGCGACACGACGCCCTGACGTTCGACGTATTCG
CCTTGTTGCACGTGTGTGAGATTGAGTGTTCTCGTATTAGTGATTGTCCC
ATTTAAGAATTGAGAACACCTCTTCTTTCCCACGCGCTTGTTTATCTTTA
TGCAAACAATTGAGTGCATCTTGATTAAGTGCATATTCAATATGATCGAT
CAATGTCTTTGTCAGTGCAGAACTCTAAACTAGGATAGCGCCGGGAAGGC
GCCGTGCCGATGCGCATCCCCGCTCGCCGCGCCCCGTCTCTCGCGCTGTG
GTTGGCCAATGCGCCGATTCGGCGATGCGCATCGACCAAATACTTCGAAG
CGTTCTTTCTTTGCCAACACCTGCCGGCTCTATTATTTCGCACGCCTTCA
CGTGTCGGAAAGCTGGAACTCCCACGGCGCGGTTGGGCATCCATTTGGGA
GCACGGGCGGGAACCTGGAACCGTTTCTCACGCTTCCGATGCCGCCGCAC
GGCGACATTAGCTGTCCCTCTGTCCCACCAGTCGGCTTTGCGAGCGTGTA
TTCATATACCTGTGCACACACATGGGCAAATTCTAGAGTTGTGAACTGGC
AGCCGGTACCAGTTTAGCTGGTAGCTGGTTGTGTAACCAGTTCAGTTCGG
CTGGCTTTTACCAGTTACGTGTTTGGAACCAGCTAACTGGTGACTGAACC
AGTTATCGCCAGTTTTTGCCAGTTTTACGGAGCCGATACCGGTTTGCCGG
CAAGTCCAGGGCTCAGCGGCTATATCGACAGGCCAAATGTTCACGATTTT
AAAGGAGAAAATAAATGGAGAAAACTGGTAGACCACCGGTCGGTTAACCG
GTTCAACCATATTACTGGAACCGGTAAAAACCGCCTCCAGTTCACGACTC
TAGCAAATTCCAACGTCCTGCAAGGGTGTCCACAAGGCTCCTTGATGTGT
TTACAAGTACCCTCGCTAGAGTCGTGCTCACAGCGCCACAAAAATGCGCC
GTTGGGGGACTTGGGCACGTTTCCAACATGGGACCGCCCCCCTGCCCGCG
CGGGCACAAAGGTGGGAAACCTCAGTACTCGTACAATCTCCCCCACTTGT
GCTTGGAATGCCTTGAAGTATTTCCGTACTCTAGCGCGCAACACCTCACA
TTTCCGAGGACCGCAACCACTTCTCTTGCGAAGCTTTTTCAATCATATCC
CCATGATGCAACATGGCTCGTCTCAAACGAGGCGCGTGGTCAATGGTCTT
AGGACTGCGGCAAGCACCACGTGAGTACATGACATATATATGCATCTCCC
CGTGATGCAACATACAAAGTACTTAGAGCTCTcccccccccccccCCCCC
CTTTCCTGTATGCCCTCGTCTGCTCCTGCCTTTGCCCCGGAGGTGCAGGA
GGACAACTTTGAGGAGTCGTGGGAGGACAGCTGTAGCCATGACATCTCGG
ACGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig100:57610..61264+

>mRNA_S-ischiensis_contig100.1669.1 ID=mRNA_S-ischiensis_contig100.1669.1|Name=mRNA_S-ischiensis_contig100.1669.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=504bp|location=Sequence derived from alignment at S-ischiensis_contig100:57610..61264+ (Schizocladia ischiensis KU_0333)
ATGCAGTTCCATGTGCACCGAAGATACACCACGCGTGCGGGACGACAACT
ACGACGAGATGCAGTTCCATGTGCACCGAAGATACACCACGCGTGCGGGA
CGACAACTACGACGAGTTCGAGGCTCTCCTGAACACCATCCGCAAAATCA
GCGAAGGCCAGCAAACCCTGGCCGCCGCTGTCCAGCAGTTCGAGGCTCTC
CTGAACACCATCCGCAAAATCAGCGAAGGCCAGCAAACCCTGGCCGCCGC
TGTCCAGCAGCTGCCGTAAAGGATGACCAGCGGATGATCATGGCCATTCT
GGAGGATCTCCACGCATCCAGCATGCTGCCGTAAAGGATGACCAGCGGAT
GATCATGGCCATTCTGGAGGATCTCCACGCATCCAGCATGGAGGACAACT
TTGAGGAGTCGTGGGAGGACAGCTGTAGCCATGACATCTCGGACGGCGAG
GACAACTTTGAGGAGTCGTGGGAGGACAGCTGTAGCCATGACATCTCGGA
CGGC
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