Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 296 |
| Cds size | 252 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815545.260028-UTR-S-ischiensis_contig100:57609..57651 | 1622815545.260028-UTR-S-ischiensis_contig100:57609..57651 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig100 57610..57651 + |
| 1695739760.6608243-UTR-S-ischiensis_contig100:57609..57651 | 1695739760.6608243-UTR-S-ischiensis_contig100:57609..57651 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig100 57610..57651 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815545.270888-CDS-S-ischiensis_contig100:57651..57709 | 1622815545.270888-CDS-S-ischiensis_contig100:57651..57709 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig100 57652..57709 + |
| 1695739760.7128985-CDS-S-ischiensis_contig100:57651..57709 | 1695739760.7128985-CDS-S-ischiensis_contig100:57651..57709 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig100 57652..57709 + |
| 1622815545.2834747-CDS-S-ischiensis_contig100:58440..58512 | 1622815545.2834747-CDS-S-ischiensis_contig100:58440..58512 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig100 58441..58512 + |
| 1695739760.7299283-CDS-S-ischiensis_contig100:58440..58512 | 1695739760.7299283-CDS-S-ischiensis_contig100:58440..58512 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig100 58441..58512 + |
| 1622815545.2968638-CDS-S-ischiensis_contig100:59489..59554 | 1622815545.2968638-CDS-S-ischiensis_contig100:59489..59554 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig100 59490..59554 + |
| 1695739760.7430236-CDS-S-ischiensis_contig100:59489..59554 | 1695739760.7430236-CDS-S-ischiensis_contig100:59489..59554 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig100 59490..59554 + |
| 1622815545.3133483-CDS-S-ischiensis_contig100:61207..61264 | 1622815545.3133483-CDS-S-ischiensis_contig100:61207..61264 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig100 61208..61264 + |
| 1695739760.756487-CDS-S-ischiensis_contig100:61207..61264 | 1695739760.756487-CDS-S-ischiensis_contig100:61207..61264 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig100 61208..61264 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig100.1669.1 >prot_S-ischiensis_contig100.1669.1 ID=prot_S-ischiensis_contig100.1669.1|Name=mRNA_S-ischiensis_contig100.1669.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=84bp
MQFHVHRRYTTRAGRQLRRVRGSPEHHPQNQRRPANPGRRCPAAAVKDDQ
RMIMAILEDLHASSMEDNFEESWEDSCSHDISDG back to topmRNA from alignment at S-ischiensis_contig100:57610..61264+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig100.1669.1 ID=mRNA_S-ischiensis_contig100.1669.1|Name=mRNA_S-ischiensis_contig100.1669.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3655bp|location=Sequence derived from alignment at S-ischiensis_contig100:57610..61264+ (Schizocladia ischiensis KU_0333)
GCGCGCAGCTGCATCGCACCGCACCATGGCGAAGGGCTTTGAATGCAGTT
CCATGTGCACCGAAGATACACCACGCGTGCGGGACGACAACTACGACGAG
GTAGAGCTCCGCAACATGCATCCCCCCGTCCCTGTACCTTTAGCGCAAAA
CAACTCGAGTTGCGGCGGTCTTGCCCCGGGGTGTCCACGAAGCATGAGCT
GCTGCACGGTGCACAGTGCGCCCACCACGCCGCCTGCGCCAACGTCTTCG
TGCGCAACGTGCACCCCCCCGTCCCTGTACTTTTAGCGCAAAACAACTCC
AGTTGCGGCCGCCGATCTTGTGTCCCACGAAGCACGAGCTGCTGGACAGG
GACAGTGCGCCCCCACGCCGCCTGCGCCAACGTCTTCGTGCGCAACGTGC
ACCCACCCGTCCCTGTACTCTTAGCGCAAAACAACTCCGGTTGCAGCGGA
TCTTGTCTCCGATCGAAGCATGAGCTGCTGCACAGCACAGTGCGCCCCCC
ACGCCGCATGCACCAACGTCTTGAGCGCGCAACGTGCACCCCCCCGTCCC
TGCGCTTTTAGCGCAAAACAACTCAGTTGCGGCGTATCTTGTTATGTCCG
ATCGAAGCACGAGCTGCTGCACAGGGCACAGTGCGCCCACCACGCCACCT
GCACCAACGCTTTCCGTGCCTGACTGGAGGGCGGATGCGGCTGGTCCCAT
GACGACTGCTCGGTCCTCAAGATGTTGCACTCACCTCATCTGGCGTACTG
AGTTTTTTCAGTCATCTGACCCCACGCCCCGTGCCTGTCCGCCCGTCTCT
GCCCAATGCCCCCTGACATTGCGCGTCAAAGTTCGAGGCTCTCCTGAACA
CCATCCGCAAAATCAGCGAAGGCCAGCAAACCCTGGCCGCCGCTGTCCAG
CAGGTGAGCACTACGTAGTTGTACTTCCGGAAGTACCTGCAAGTTGTACT
GTACAGAAACTTCGCCGGTCCCTCGGCGGCGCCCTACTATAGTCAGTAGT
TGTGACACTCTTCGTGTCCACGCTCATTAGCGGAGAATGCCGGTTAAGCC
GAGCGAGGCCTAATTAGTACTGTACTCGAGTACAGGAACTTCATCACGTG
CTTCCATTAGAGCTTTAGCCGGCAAAAGCAATCGCCGGTGCTCCCAGTGC
ACACACGCCAATGTTGGCGCATGAAAAGGTTGCGTTGTAGGTGGTACAAC
TTCCCGGCACGAGACATGATCCAAGTACTTCAAGTCCTTGGGTTATGATG
GTGTCCATAACCGCTTGAAGATGTCAATGAACGCATTAGTACATAGCGAC
AGATACTTGTAGATTGTTCCAGACAACCGCTCTCATGGCATGGCTGGCCT
GGTCTGCGCCGTCCCCGTACTCTGACCAGCTGTCAATCGATCAGCGCTGC
ATGCCCCACGCCTGACCGGGCTCCATTGCTCAGCCCCTCTCGCGCGCAGC
GGTGTAGTTTCTAACCTGCAAACATTGCTCATTTCGCACGTGTCGGGCTG
GTGTGTGTGTACTCACATCTCTGTGCATGCCCTGGACCCGAACGATCCTC
GTCTTTGCTCCTTCTGGTGGATCGCTGGCCAGCTGTAGCCGAAGCCATTG
GCCACGCGTCCTATTGGACGGAGCGCGCCGGTTATTTCACCGACAGAACT
TTGGGTCGCACCATACCGGAAATGCCATAGTAGAGCTCTAGAGCAAAAAA
TGAGCATGAACGAAGTGCACACTTCACAAATGCCAGCTTGCTTTTCCCGC
CTATGTATCGCCCTCGGGGGACCGGGAAGAAAGCTGGAGTGACAACTGTG
CTTGTTATCACTCACCCGGTGCTGCCCCTGCTCGTGTGCCTACCTTCCCC
TTCCTCTGCACCACAATGGCACTGACATAGCTGCCGTAAAGGATGACCAG
CGGATGATCATGGCCATTCTGGAGGATCTCCACGCATCCAGCATGGTCAG
TGCGCCCATTCTGTCAAGCTTTGTGGCTGAGCGGCTCGTAGGAGAGGAGC
ACAGTGTGCTACAGTGCAGTGCGTGGCACTTTTAGTTGGGGACAGACTCG
AGTACCTCGGAGCAGATACGGCGAGTTTAGATATGCGGAGGCGTTTTGTA
GCCGCGGTTCAAGCTTGAAGGCACACGCCGTCCAAGGTGTGCACGCAGAT
CTAATTGCTGATCACTCTCCCGAAACACCACTTCTGCGGAAGGCACATAC
AGCGCTCGGGGATGTCGTGCGACACGACGCCCTGACGTTCGACGTATTCG
CCTTGTTGCACGTGTGTGAGATTGAGTGTTCTCGTATTAGTGATTGTCCC
ATTTAAGAATTGAGAACACCTCTTCTTTCCCACGCGCTTGTTTATCTTTA
TGCAAACAATTGAGTGCATCTTGATTAAGTGCATATTCAATATGATCGAT
CAATGTCTTTGTCAGTGCAGAACTCTAAACTAGGATAGCGCCGGGAAGGC
GCCGTGCCGATGCGCATCCCCGCTCGCCGCGCCCCGTCTCTCGCGCTGTG
GTTGGCCAATGCGCCGATTCGGCGATGCGCATCGACCAAATACTTCGAAG
CGTTCTTTCTTTGCCAACACCTGCCGGCTCTATTATTTCGCACGCCTTCA
CGTGTCGGAAAGCTGGAACTCCCACGGCGCGGTTGGGCATCCATTTGGGA
GCACGGGCGGGAACCTGGAACCGTTTCTCACGCTTCCGATGCCGCCGCAC
GGCGACATTAGCTGTCCCTCTGTCCCACCAGTCGGCTTTGCGAGCGTGTA
TTCATATACCTGTGCACACACATGGGCAAATTCTAGAGTTGTGAACTGGC
AGCCGGTACCAGTTTAGCTGGTAGCTGGTTGTGTAACCAGTTCAGTTCGG
CTGGCTTTTACCAGTTACGTGTTTGGAACCAGCTAACTGGTGACTGAACC
AGTTATCGCCAGTTTTTGCCAGTTTTACGGAGCCGATACCGGTTTGCCGG
CAAGTCCAGGGCTCAGCGGCTATATCGACAGGCCAAATGTTCACGATTTT
AAAGGAGAAAATAAATGGAGAAAACTGGTAGACCACCGGTCGGTTAACCG
GTTCAACCATATTACTGGAACCGGTAAAAACCGCCTCCAGTTCACGACTC
TAGCAAATTCCAACGTCCTGCAAGGGTGTCCACAAGGCTCCTTGATGTGT
TTACAAGTACCCTCGCTAGAGTCGTGCTCACAGCGCCACAAAAATGCGCC
GTTGGGGGACTTGGGCACGTTTCCAACATGGGACCGCCCCCCTGCCCGCG
CGGGCACAAAGGTGGGAAACCTCAGTACTCGTACAATCTCCCCCACTTGT
GCTTGGAATGCCTTGAAGTATTTCCGTACTCTAGCGCGCAACACCTCACA
TTTCCGAGGACCGCAACCACTTCTCTTGCGAAGCTTTTTCAATCATATCC
CCATGATGCAACATGGCTCGTCTCAAACGAGGCGCGTGGTCAATGGTCTT
AGGACTGCGGCAAGCACCACGTGAGTACATGACATATATATGCATCTCCC
CGTGATGCAACATACAAAGTACTTAGAGCTCTcccccccccccccCCCCC
CTTTCCTGTATGCCCTCGTCTGCTCCTGCCTTTGCCCCGGAGGTGCAGGA
GGACAACTTTGAGGAGTCGTGGGAGGACAGCTGTAGCCATGACATCTCGG
ACGGC back to topCoding sequence (CDS) from alignment at S-ischiensis_contig100:57610..61264+ >mRNA_S-ischiensis_contig100.1669.1 ID=mRNA_S-ischiensis_contig100.1669.1|Name=mRNA_S-ischiensis_contig100.1669.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=504bp|location=Sequence derived from alignment at S-ischiensis_contig100:57610..61264+ (Schizocladia ischiensis KU_0333)
ATGCAGTTCCATGTGCACCGAAGATACACCACGCGTGCGGGACGACAACT
ACGACGAGATGCAGTTCCATGTGCACCGAAGATACACCACGCGTGCGGGA
CGACAACTACGACGAGTTCGAGGCTCTCCTGAACACCATCCGCAAAATCA
GCGAAGGCCAGCAAACCCTGGCCGCCGCTGTCCAGCAGTTCGAGGCTCTC
CTGAACACCATCCGCAAAATCAGCGAAGGCCAGCAAACCCTGGCCGCCGC
TGTCCAGCAGCTGCCGTAAAGGATGACCAGCGGATGATCATGGCCATTCT
GGAGGATCTCCACGCATCCAGCATGCTGCCGTAAAGGATGACCAGCGGAT
GATCATGGCCATTCTGGAGGATCTCCACGCATCCAGCATGGAGGACAACT
TTGAGGAGTCGTGGGAGGACAGCTGTAGCCATGACATCTCGGACGGCGAG
GACAACTTTGAGGAGTCGTGGGAGGACAGCTGTAGCCATGACATCTCGGA
CGGC back to top
|